Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40819 Brassica carinata HOM05D006769 ORTHO05D008522 1.5e-228 795.8 392 100.0
C08p38120 Brassica napus HOM05D006769 ORTHO05D008522 1.5e-228 795.8 392 100.0
BolC8t51387H Brassica oleracea HOM05D006769 ORTHO05D008522 1.1e-226 789.6 397 98.7
A09p55190 Brassica napus HOM05D006769 ORTHO05D008522 2.1e-214 748.8 393 95.2
BraA09t40927Z Brassica rapa HOM05D006769 ORTHO05D008522 1.0e-213 746.5 393 94.9
BcaB08g35324 Brassica carinata HOM05D006769 ORTHO05D008522 3.5e-193 678.3 426 83.3
Sp6g10380 Schrenkiella parvula HOM05D006769 ORTHO05D008522 5.4e-162 574.7 498 64.9
AT2G26470 Arabidopsis thaliana HOM05D006769 ORTHO05D008522 7.3e-151 537.7 496 61.3
Thhalv10003450m.g Eutrema salsugineum HOM05D006769 ORTHO05D008522 2.3e-149 532.7 486 62.3
AL4G19290 Arabidopsis lyrata HOM05D006769 ORTHO05D008522 1.7e-147 526.6 499 59.9
CARHR294500 Cardamine hirsuta HOM05D006769 ORTHO05D008522 1.2e-142 510.4 472 61.2
Aa31LG5G9400 Aethionema arabicum HOM05D006769 ORTHO05D008522 3.4e-140 502.3 486 57.8
Carub.0004s0653 Capsella rubella HOM05D006769 ORTHO05D008522 7.6e-140 501.1 546 54.9
Carub.0004s0639 Capsella rubella HOM05D006769 ORTHO05D008522 4.6e-137 491.9 536 55.0
THA.LOC104819455 Tarenaya hassleriana HOM05D006769 ORTHO05D008522 6.4e-123 444.9 510 52.2
MD05G1163100 Malus domestica HOM05D006769 ORTHO05D008522 9.0e-109 397.9 397 54.2
Thecc.01G211800 Theobroma cacao HOM05D006769 ORTHO05D008522 1.9e-106 390.2 360 57.8
Duzib138G0404 Durio zibethinus HOM05D006769 ORTHO05D008522 1.2e-105 387.5 366 56.6
Potri.002G250400 Populus trichocarpa HOM05D006769 ORTHO05D008522 1.2e-105 387.5 291 63.9
Prupe.8G191400 Prunus persica HOM05D006769 ORTHO05D008522 1.3e-104 384.0 397 52.9
FvH4_2g17880 Fragaria vesca HOM05D006769 ORTHO05D008522 2.3e-104 383.3 396 51.0
RcHm_v2.0_Chr6g0283131 Rosa chinensis HOM05D006769 ORTHO05D008522 2.3e-104 383.3 257 68.5
Phvul.008G137400 Phaseolus vulgaris HOM05D006769 ORTHO05D008522 8.7e-104 381.3 405 53.1
Hma1.2p1_0161F.1_g071350 Hydrangea macrophylla HOM05D006769 ORTHO05D008522 1.1e-103 380.9 405 52.3
TWI18G0992 Tripterygium wilfordii HOM05D006769 ORTHO05D008522 1.1e-103 380.9 324 58.6
CiPaw.13G054700 Carya illinoinensis HOM05D006769 ORTHO05D008522 3.3e-103 379.4 255 70.2
Ca_07395_v3 Cicer arietinum L. HOM05D006769 ORTHO05D008522 3.3e-103 379.4 406 51.5
Glyma.08G344800 Glycine max HOM05D006769 ORTHO05D008522 3.3e-103 379.4 266 67.7
FAN27G3257 Fragaria x ananassa HOM05D006769 ORTHO05D008522 4.3e-103 379.0 352 54.3
FAN24G2350 Fragaria x ananassa HOM05D006769 ORTHO05D008522 5.7e-103 378.6 396 50.8
Medtr7g052250 Medicago truncatula HOM05D006769 ORTHO05D008522 5.7e-103 378.6 261 69.0
FAN15G1712 Fragaria x ananassa HOM05D006769 ORTHO05D008522 7.4e-103 378.3 396 50.0
MSTRG.12754 Avicennia marina HOM05D006769 ORTHO05D008522 9.7e-103 377.9 274 65.0
arahy.Tifrunner.gnm1.ann1.N7FX8W Arachis hypogaea HOM05D006769 ORTHO05D008522 1.3e-102 377.5 361 55.4
QL09p046131 Quercus lobata HOM05D006769 ORTHO05D008522 2.8e-102 376.3 449 47.9
arahy.Tifrunner.gnm1.ann1.ADK8RR Arachis hypogaea HOM05D006769 ORTHO05D008522 4.8e-102 375.6 361 55.1
PSO170G1917 Papaver somniferum HOM05D006769 ORTHO05D008522 6.3e-102 375.2 357 52.9
Sc05g0001770 Simmondsia chinensis HOM05D006769 ORTHO05D008522 6.3e-102 375.2 319 61.8
Lalb_Chr03g0041161 Lupinus albus HOM05D006769 ORTHO05D008522 8.2e-102 374.8 396 52.3
Manes.12G053000 Manihot esculenta HOM05D006769 ORTHO05D008522 1.8e-101 373.6 401 51.9
Lj1g0001413 Lotus japonicus HOM05D006769 ORTHO05D008522 4.1e-101 372.5 398 51.3
ECA248G0008 Erigeron canadensis HOM05D006769 ORTHO05D008522 5.3e-101 372.1 295 62.0
Cfa010337 Carpinus fangiana HOM05D006769 ORTHO05D008522 1.5e-100 370.5 285 62.8
AUR62028711 Chenopodium quinoa HOM05D006769 ORTHO05D008522 2.0e-100 370.2 268 65.7
SHI10304 Sapria himalayana HOM05D006769 ORTHO05D008522 2.0e-100 370.2 252 69.0
Eucgr.K02091 Eucalyptus grandis HOM05D006769 ORTHO05D008522 2.6e-100 369.8 258 66.7
Psat3g151240 Pisum sativum HOM05D006769 ORTHO05D008522 2.6e-100 369.8 403 50.6
Atru.chr6.1512 Acer truncatum HOM05D006769 ORTHO05D008522 3.4e-100 369.4 283 63.3
CANSAT01G2880 Cannabis sativa HOM05D006769 ORTHO05D008522 3.4e-100 369.4 253 67.6
PGR044G2601 Punica granatum HOM05D006769 ORTHO05D008522 3.4e-100 369.4 295 63.4
Gohir.D07G166800 Gossypium hirsutum HOM05D006769 ORTHO05D008522 4.5e-100 369.0 398 50.8
GSVIVG01006251001 Vitis vinifera HOM05D006769 ORTHO05D008522 4.5e-100 369.0 277 65.3
ClCG09G008260 Citrullus lanatus HOM05D006769 ORTHO05D008522 1.7e-99 367.1 259 64.9
HanXRQChr01g0007211 Helianthus annuus HOM05D006769 ORTHO05D008522 2.9e-99 366.3 281 62.3
Actinidia30020 Actinidia chinensis HOM05D006769 ORTHO05D008522 8.5e-99 364.8 279 63.1
DCAR_004766 Daucus carota HOM05D006769 ORTHO05D008522 3.2e-98 362.8 373 52.8
CAN.G188.2 Capsicum annuum HOM05D006769 ORTHO05D008522 4.2e-98 362.5 425 49.6
AUR62008129 Chenopodium quinoa HOM05D006769 ORTHO05D008522 9.4e-98 361.3 388 50.8
Gorai.N003700 Gossypium raimondii HOM05D006769 ORTHO05D008522 9.4e-98 361.3 363 53.2
Aqoxy5G00037 Aquilegia oxysepala HOM05D006769 ORTHO05D008522 2.1e-97 360.1 404 50.0
CsaV3_7G026790 Cucumis sativus L. HOM05D006769 ORTHO05D008522 2.7e-97 359.8 320 55.3
Cc01_g16210 Coffea canephora HOM05D006769 ORTHO05D008522 4.6e-97 359.0 304 57.9
Nn1g08265 Nelumbo nucifera HOM05D006769 ORTHO05D008522 6.1e-97 358.6 398 49.0
TPR.G26832 Trifolium pratense HOM05D006769 ORTHO05D008522 1.0e-96 357.8 301 59.5
Ah.11g051100 Amaranthus hybridus HOM05D006769 ORTHO05D008522 2.3e-96 356.7 316 57.0
Migut.N00662 Erythranthe guttata HOM05D006769 ORTHO05D008522 2.3e-96 356.7 399 48.9
Oeu003634.1 Olea europaea HOM05D006769 ORTHO05D008522 3.9e-96 355.9 350 53.4
Hund02792 Selenicereus undatus HOM05D006769 ORTHO05D008522 6.7e-96 355.1 383 50.4
ATR0609G088 Amborella trichopoda HOM05D006769 ORTHO05D008522 2.2e-94 350.1 258 65.5
EL10Ac5g10636 Beta vulgaris HOM05D006769 ORTHO05D008522 4.8e-94 349.0 388 51.0
Dinv12798 Davidia involucrata HOM05D006769 ORTHO05D008522 4.1e-93 345.9 414 47.3
Nitab4.5_0008509g0020 Nicotiana tabacum HOM05D006769 ORTHO05D008522 5.9e-92 342.0 251 64.5
Lj2A1118G65 Lonicera japonica HOM05D006769 ORTHO05D008522 1.0e-91 341.3 396 47.7
unitig_37.g12548 Utricularia gibba HOM05D006769 ORTHO05D008522 1.7e-91 340.5 351 49.9
SalBow3G4668 Salvia bowleyana HOM05D006769 ORTHO05D008522 3.8e-91 339.3 322 56.2
SEGI_34173 Sequoiadendron giganteum HOM05D006769 ORTHO05D008522 2.3e-88 330.1 395 47.1
Rhsim13G0052300 Rhododendron simsii HOM05D006769 ORTHO05D008522 1.4e-85 320.9 385 47.3
AagrBONN_evm.TU.Sc2ySwM_344.907 Anthoceros agrestis HOM05D006769 ORTHO05D008522 2.9e-83 313.2 357 49.0
TAR365G1082 Trochodendron aralioides HOM05D006769 ORTHO05D008522 5.0e-83 312.4 396 44.9
SMO241G0010 Selaginella moellendorffii HOM05D006769 ORTHO05D008522 1.2e-79 301.2 252 58.7
Lsat_1_v5_gn_5_178440 Lactuca sativa HOM05D006769 ORTHO05D008522 3.5e-76 289.7 258 53.1
HPP92_009961 Vanilla planifolia HOM05D006769 ORTHO05D008522 7.7e-76 288.5 257 57.6
Zm00001eb090430 Zea mays HOM05D006769 ORTHO05D008522 3.6e-73 279.6 252 56.7
HanXRQChr01g0007221 Helianthus annuus HOM05D006769 ORTHO05D008522 1.8e-72 277.3 334 45.5
vmacro21305 Vaccinium macrocarpon HOM05D006769 ORTHO05D008522 2.6e-71 273.5 408 41.2
VMungo1383G2812 Vigna mungo HOM05D006769 ORTHO05D008522 3.7e-70 269.6 319 49.5
Pp3c12_23250 Physcomitrium patens HOM05D006769 ORTHO05D008522 1.8e-69 267.3 304 47.7
CSS0037741 Camellia sinensis var. sinensis HOM05D006769 ORTHO05D008522 7.7e-68 261.9 172 69.2
Gohir.A07G159600 Gossypium hirsutum HOM05D006769 ORTHO05D008522 7.7e-68 261.9 172 71.5
Peaxi162Scf00335g01510 Petunia axillaris HOM05D006769 ORTHO05D008522 2.5e-66 256.9 182 66.5
Cpa.g.sc8.80 Carica papaya HOM05D006769 ORTHO05D008522 3.2e-66 256.5 198 65.2
CBR_g20401 Chara braunii HOM05D006769 ORTHO05D008522 1.8e-56 224.2 339 38.9
Hma1.2p1_0161F.1_g071340 Hydrangea macrophylla HOM05D006769 ORTHO05D008522 2.3e-56 223.8 298 47.3
Sed0011761 Sechium edule HOM05D006769 ORTHO05D008522 4.0e-56 223.0 255 46.3
Haze_03306 Corylus avellana HOM05D006769 ORTHO05D008522 6.8e-56 222.2 158 66.5
Mapoly0021s0139 Marchantia polymorpha HOM05D006769 ORTHO05D008522 1.2e-55 221.5 253 47.8
Ciclev10032230m.g Citrus clementina HOM05D006769 ORTHO05D008522 2.6e-55 220.3 145 69.7
SEGI_18025 Sequoiadendron giganteum HOM05D006769 ORTHO05D008522 1.6e-52 211.1 153 67.3
Nitab4.5_0000038g0100 Nicotiana tabacum HOM05D006769 ORTHO05D008522 3.1e-48 196.8 386 37.8
Os06g0470800 Oryza sativa ssp. japonica HOM05D006769 ORTHO05D008522 5.2e-48 196.1 178 56.2
CDE09G0834 Ceratophyllum demersum HOM05D006769 ORTHO05D008522 2.4e-45 187.2 255 41.6
MCO07G255 Micromonas commoda HOM05D006769 ORTHO05D008522 7.8e-44 182.2 251 40.2
Haze_03305 Corylus avellana HOM05D006769 ORTHO05D008522 6.8e-40 169.1 113 67.3
QL09p046008 Quercus lobata HOM05D006769 ORTHO05D008522 9.2e-37 158.7 91 79.1
PRCOL_00005345 Prasinoderma coloniale HOM05D006769 ORTHO05D008522 9.5e-34 148.7 316 34.8
RcHm_v2.0_Chr6g0283021 Rosa chinensis HOM05D006769 ORTHO05D008522 6.8e-32 142.5 123 57.7
Cfa021866 Carpinus fangiana HOM05D006769 ORTHO05D008522 1.6e-28 131.3 354 33.6
Cre09.g410000 Chlamydomonas reinhardtii HOM05D006769 ORTHO05D008522 3.3e-26 123.6 136 46.3
VMungo1383G3069 Vigna mungo HOM05D006769 ORTHO05D008522 1.6e-25 121.3 87 62.1
Cpa.g.sc8.79 Carica papaya HOM05D006769 ORTHO05D008522 3.6e-25 120.2 84 61.9
CDE02G1388 Ceratophyllum demersum HOM05D007934 ORTHO05D010067 5.1e-19 99.8 83 54.2
MD10G1152700 Malus domestica HOM05D006769 ORTHO05D008522 8.7e-19 99.0 147 40.1
SGA_v2.0_scaffold77G25292 Striga asiatica HOM05D006769 ORTHO05D008522 3.3e-18 97.1 242 33.9
CSS0014368 Camellia sinensis var. sinensis HOM05D006769 ORTHO05D008522 4.8e-17 93.2 257 33.1
Os06g0471100 Oryza sativa ssp. japonica HOM05D006769 ORTHO05D008522 1.8e-08 64.7 52 55.8
Prupe.6G190400 Prunus persica HOM05D006769 ORTHO05D008522 6.4e-06 56.2 47 48.9


User provided reference genes

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