Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40815 Brassica carinata HOM05D000561 ORTHO05D008162 1.2e-163 579.7 292 100.0
BolC8t51383H Brassica oleracea HOM05D000561 ORTHO05D008162 1.8e-154 549.3 294 96.3
C08p38080 Brassica napus HOM05D000561 ORTHO05D008162 2.7e-150 535.4 293 94.5
A09p55150 Brassica napus HOM05D000561 ORTHO05D008162 8.7e-149 530.4 295 92.5
BraA09t40923Z Brassica rapa HOM05D000561 ORTHO05D008162 4.3e-148 528.1 295 92.5
BcaB08g35302 Brassica carinata HOM05D000561 ORTHO05D008162 5.3e-138 494.6 299 84.3
Sp4g07760 Schrenkiella parvula HOM05D000561 ORTHO05D008162 2.5e-124 449.1 314 75.8
Carub.0003s2738 Capsella rubella HOM05D000561 ORTHO05D008162 9.1e-114 414.1 288 73.6
AL4G19400 Arabidopsis lyrata HOM05D000561 ORTHO05D008162 5.0e-112 408.3 300 71.3
CARHR050650 Cardamine hirsuta HOM05D000561 ORTHO05D008162 6.5e-112 407.9 302 71.5
Thhalv10001252m.g Eutrema salsugineum HOM05D000561 ORTHO05D008162 1.9e-111 406.4 313 71.2
AT2G26540 Arabidopsis thaliana HOM05D000561 ORTHO05D008162 2.3e-109 399.4 309 67.6
Aa31LG10G9880 Aethionema arabicum HOM05D000561 ORTHO05D008162 6.7e-101 371.3 259 73.0
THA.LOC104803685 Tarenaya hassleriana HOM05D000561 ORTHO05D008162 3.5e-97 359.0 243 72.0
Atru.chr13.629 Acer truncatum HOM05D000561 ORTHO05D008162 3.2e-95 352.4 286 61.5
Atru.chr13.633 Acer truncatum HOM05D000561 ORTHO05D008162 3.2e-95 352.4 286 61.5
Potri.014G034700 Populus trichocarpa HOM05D000561 ORTHO05D008162 3.0e-93 345.9 254 67.7
RcHm_v2.0_Chr6g0307161 Rosa chinensis HOM05D000561 ORTHO05D008162 2.8e-91 339.3 293 62.1
TAR628G0509 Trochodendron aralioides HOM05D000561 ORTHO05D008162 3.7e-91 339.0 272 62.1
Prupe.1G440800 Prunus persica HOM05D000561 ORTHO05D008162 8.3e-91 337.8 252 66.7
Medtr3g101350 Medicago truncatula HOM05D000561 ORTHO05D008162 4.1e-90 335.5 259 64.5
Psat5g044440 Pisum sativum HOM05D000561 ORTHO05D008162 7.0e-90 334.7 259 65.3
QL02p005893 Quercus lobata HOM05D000561 ORTHO05D008162 7.0e-90 334.7 242 69.8
Nn5g30201 Nelumbo nucifera HOM05D000561 ORTHO05D000514 1.2e-89 334.0 259 65.6
Ciclev10001965m.g Citrus clementina HOM05D000561 ORTHO05D008162 1.6e-89 333.6 253 67.2
Lalb_Chr08g0245641 Lupinus albus HOM05D000561 ORTHO05D008162 1.6e-89 333.6 297 59.3
GSVIVG01009559001 Vitis vinifera HOM05D000561 ORTHO05D008162 2.7e-89 332.8 295 58.6
TPR.G10521 Trifolium pratense HOM05D000561 ORTHO05D008162 3.5e-89 332.4 245 66.5
CiPaw.16G047800 Carya illinoinensis HOM05D000561 ORTHO05D008162 5.9e-89 331.6 243 67.9
arahy.Tifrunner.gnm1.ann1.YYC1CT Arachis hypogaea HOM05D000561 ORTHO05D008162 7.7e-89 331.3 257 65.4
Duzib116G0222 Durio zibethinus HOM05D000561 ORTHO05D008162 1.0e-88 330.9 298 58.1
MD15G1087100 Malus domestica HOM05D000561 ORTHO05D008162 1.0e-88 330.9 258 65.1
MD08G1106500 Malus domestica HOM05D000561 ORTHO05D008162 1.3e-88 330.5 288 60.4
TAR625G0340 Trochodendron aralioides HOM05D000561 ORTHO05D008162 1.3e-88 330.5 285 60.0
CSS0036187 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D008162 2.2e-88 329.7 259 64.9
Gohir.D05G203500 Gossypium hirsutum HOM05D000561 ORTHO05D008162 2.2e-88 329.7 256 64.8
Lj1g0015016 Lotus japonicus HOM05D000561 ORTHO05D008162 1.9e-87 326.6 257 64.2
TWI56G0230 Tripterygium wilfordii HOM05D000561 ORTHO05D008162 1.9e-87 326.6 259 65.3
CAN.G371.47 Capsicum annuum HOM05D000561 ORTHO05D008162 4.2e-87 325.5 259 63.3
Gorai.009G209500 Gossypium raimondii HOM05D000561 ORTHO05D008162 9.5e-87 324.3 257 64.6
Actinidia22609 Actinidia chinensis HOM05D000561 ORTHO05D008162 1.2e-86 323.9 245 64.9
Solyc04g079320.4 Solanum lycopersicum HOM05D000561 ORTHO05D008162 2.1e-86 323.2 274 60.2
Dinv39338 Davidia involucrata HOM05D000561 ORTHO05D008162 3.6e-86 322.4 245 64.5
COL.COLO4_26457 Corchorus olitorius HOM05D000561 ORTHO05D008162 6.1e-86 321.6 230 68.3
Sopen04g032930 Solanum pennellii HOM05D000561 ORTHO05D008162 6.1e-86 321.6 271 60.9
Phvul.009G063100 Phaseolus vulgaris HOM05D000561 ORTHO05D008162 1.0e-85 320.9 257 62.3
Cc10_g03990 Coffea canephora HOM05D000561 ORTHO05D008162 1.4e-85 320.5 300 56.3
Sed0001510 Sechium edule HOM05D000561 ORTHO05D008162 1.4e-85 320.5 256 62.1
ECA232G0584 Erigeron canadensis HOM05D000561 ORTHO05D008162 1.8e-85 320.1 283 59.0
Hma1.2p1_0260F.1_g104740 Hydrangea macrophylla HOM05D000561 ORTHO05D008162 1.8e-85 320.1 288 57.3
vmacro21557 Vaccinium macrocarpon HOM05D000561 ORTHO05D008162 3.0e-85 319.3 259 63.3
FAN27G1876 Fragaria x ananassa HOM05D000561 ORTHO05D008162 4.0e-85 318.9 254 65.4
Gohir.A05G200200 Gossypium hirsutum HOM05D000561 ORTHO05D008162 4.0e-85 318.9 256 63.7
Manes.05G170800 Manihot esculenta HOM05D000561 ORTHO05D008162 4.0e-85 318.9 266 62.4
Eucgr.F02370 Eucalyptus grandis HOM05D000561 ORTHO05D008162 1.2e-84 317.4 233 67.8
Glyma.06G037300 Glycine max HOM05D000561 ORTHO05D008162 1.2e-84 317.4 251 63.7
MBI06_g08185_MAGBIO Magnolia biondii HOM05D000561 ORTHO05D008162 1.2e-84 317.4 294 56.8
Rhsim06G0046600 Rhododendron simsii HOM05D000561 ORTHO05D008162 1.2e-84 317.4 246 64.6
ClCG08G015630 Citrullus lanatus HOM05D000561 ORTHO05D008162 3.4e-84 315.8 249 63.9
Duzib093G1567 Durio zibethinus HOM05D000561 ORTHO05D008162 3.4e-84 315.8 258 61.6
Sabra14G0024600 Salix brachista HOM05D000561 ORTHO05D008162 5.7e-84 315.1 289 60.6
CsaV3_2G028140 Cucumis sativus L. HOM05D000561 ORTHO05D008162 9.8e-84 314.3 255 62.4
Os03g0186100 Oryza sativa ssp. japonica HOM05D000561 ORTHO05D008162 1.3e-83 313.9 240 62.9
MELO3C010892.2 Cucumis melo HOM05D000561 ORTHO05D008162 2.8e-83 312.8 256 62.1
PSO675G5921 Papaver somniferum HOM05D000561 ORTHO05D008162 2.8e-83 312.8 259 61.4
PSO541G5839 Papaver somniferum HOM05D000561 ORTHO05D008162 3.7e-83 312.4 259 61.0
DCAR_019467 Daucus carota HOM05D000561 ORTHO05D008162 4.1e-82 308.9 245 61.6
FvH4_2g34880 Fragaria vesca HOM05D000561 ORTHO05D008162 4.1e-82 308.9 251 64.5
Ca_15966_v3 Cicer arietinum L. HOM05D000561 ORTHO05D008162 9.2e-82 307.8 242 64.5
Zm00001eb006450 Zea mays HOM05D000561 ORTHO05D008162 9.2e-82 307.8 240 62.5
Haze_17567 Corylus avellana HOM05D000561 ORTHO05D008162 1.2e-81 307.4 246 64.6
Aqoxy6G01386 Aquilegia oxysepala HOM05D000561 ORTHO05D008162 1.6e-81 307.0 245 61.6
Migut.C00604 Erythranthe guttata HOM05D000561 ORTHO05D008162 2.0e-81 306.6 262 59.2
CDE06G2652 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 2.7e-81 306.2 252 59.9
HanXRQChr09g0268001 Helianthus annuus HOM05D000561 ORTHO05D008162 2.7e-81 306.2 288 57.6
HanXRQChr02g0038741 Helianthus annuus HOM05D000561 ORTHO05D008162 4.5e-81 305.4 245 62.0
Thecc.08G013400 Theobroma cacao HOM05D000561 ORTHO05D008162 1.0e-80 304.3 241 64.3
Nitab4.5_0000068g0440 Nicotiana tabacum HOM05D000561 ORTHO05D008162 6.6e-80 301.6 243 63.0
Nitab4.5_0005549g0040 Nicotiana tabacum HOM05D000561 ORTHO05D008162 8.6e-80 301.2 243 63.4
MSTRG.1332 Avicennia marina HOM05D000561 ORTHO05D008162 3.3e-79 299.3 259 57.5
Carub.0004s0671 Capsella rubella HOM05D000561 ORTHO05D008162 5.6e-79 298.5 309 56.6
Lsat_1_v5_gn_4_124200 Lactuca sativa HOM05D000561 ORTHO05D008162 5.6e-79 298.5 290 57.6
ATR0087G004 Amborella trichopoda HOM05D000561 ORTHO05D008162 1.2e-78 297.4 228 63.2
Manes.18G034000 Manihot esculenta HOM05D000561 ORTHO05D008162 4.7e-78 295.4 228 65.4
Lsat_1_v5_gn_1_20480 Lactuca sativa HOM05D000561 ORTHO05D008162 5.2e-77 292.0 245 60.0
PGR031G3300 Punica granatum HOM05D000561 ORTHO05D008162 5.2e-77 292.0 218 66.1
HPP92_011186 Vanilla planifolia HOM05D000561 ORTHO05D008162 2.0e-76 290.0 310 51.0
Migut.O00512 Erythranthe guttata HOM05D000561 ORTHO05D008162 2.6e-76 289.7 325 50.2
Sabra02G0100300 Salix brachista HOM05D000561 ORTHO05D008162 4.4e-76 288.9 216 66.7
Peaxi162Scf00566g00219 Petunia axillaris HOM05D000561 ORTHO05D008162 1.3e-75 287.3 250 61.6
EL10Ac1g01805 Beta vulgaris HOM05D000561 ORTHO05D008162 9.2e-74 281.2 295 53.6
SGA_v2.0_scaffold71G24043 Striga asiatica HOM05D000561 ORTHO05D008162 7.8e-73 278.1 262 56.1
VMungo1309G1588 Vigna mungo HOM05D000561 ORTHO05D008162 4.3e-71 272.3 231 60.2
SalBow7G2378 Salvia bowleyana HOM05D000561 ORTHO05D008162 9.5e-71 271.2 330 46.7
FAN20G2490 Fragaria x ananassa HOM05D000561 ORTHO05D008162 4.7e-70 268.9 376 45.5
Pp3c9_18350 Physcomitrium patens HOM05D000561 ORTHO05D008162 8.0e-70 268.1 243 54.3
Cpa.g.sc64.2 Carica papaya HOM05D000561 ORTHO05D008162 2.9e-67 259.6 190 69.5
AagrBONN_evm.TU.Sc2ySwM_228.1283 Anthoceros agrestis HOM05D000561 ORTHO05D008162 3.7e-67 259.2 237 52.7
Hund26617 Selenicereus undatus HOM05D000561 ORTHO05D008162 1.9e-66 256.9 361 42.7
Mapoly0101s0072 Marchantia polymorpha HOM05D000561 ORTHO05D008162 4.6e-65 252.3 240 51.2
SEGI_40608 Sequoiadendron giganteum HOM05D000561 ORTHO05D008162 1.3e-64 250.8 213 58.2
Lj4A51T47 Lonicera japonica HOM05D000561 ORTHO05D008162 1.1e-63 247.7 194 64.9
SHI08313 Sapria himalayana HOM05D000561 ORTHO05D008162 1.1e-63 247.7 252 52.4
AUR62022458 Chenopodium quinoa HOM05D000561 ORTHO05D008162 1.2e-62 244.2 290 50.0
Glyma.04G037000 Glycine max HOM05D000561 ORTHO05D008162 3.4e-60 236.1 197 61.9
Ah.06g192790 Amaranthus hybridus HOM05D000561 ORTHO05D008162 2.9e-59 233.0 238 52.9
ECA247G1201 Erigeron canadensis HOM05D000561 ORTHO05D000514 1.1e-58 231.1 198 57.1
SMO367G0032 Selaginella moellendorffii HOM05D000561 ORTHO05D008162 5.6e-55 218.8 229 49.3
CBR_g12178 Chara braunii HOM05D000561 ORTHO05D008162 3.1e-53 213.0 268 42.9
AUR62040067 Chenopodium quinoa HOM05D000561 ORTHO05D008162 2.2e-51 206.8 294 42.9
Cre09.g409100 Chlamydomonas reinhardtii HOM05D000561 ORTHO05D008162 1.4e-50 204.1 248 46.0
MCO15G161 Micromonas commoda HOM05D000561 ORTHO05D008162 3.3e-47 193.0 246 45.5
arahy.Tifrunner.gnm1.ann1.96H4RR Arachis hypogaea HOM05D000561 ORTHO05D008162 7.3e-47 191.8 146 67.8
Sc26g0003980 Simmondsia chinensis HOM05D000561 ORTHO05D008162 1.2e-46 191.0 201 55.7
PRCOL_00005348 Prasinoderma coloniale HOM05D000561 ORTHO05D008162 3.6e-46 189.5 246 41.9
CDE10G0258 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 3.4e-44 183.0 178 54.5
Migut.N02692 Erythranthe guttata HOM05D000561 ORTHO05D008162 3.8e-43 179.5 158 59.5
unitig_32.g11128 Utricularia gibba HOM05D000561 ORTHO05D008162 2.3e-40 170.2 142 57.7
Lsat_1_v5_gn_2_45600 Lactuca sativa HOM05D000561 ORTHO05D008162 1.9e-34 150.6 203 42.9
SGA_v2.0_scaffold217G42442 Striga asiatica HOM05D000561 ORTHO05D008162 1.0e-32 144.8 122 61.5
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 9.0e-29 131.7 163 46.0
SGA_v2.0_scaffold217G42441 Striga asiatica HOM05D000561 ORTHO05D008162 1.3e-19 101.3 79 60.8
Lsat_1_v5_gn_5_39421 Lactuca sativa HOM05D000487 ORTHO05D048384 4.2e-18 96.3 89 48.3


User provided reference genes

Program Settings