Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40810 Brassica carinata HOM05D003827 ORTHO05D004518 2.2e-302 1041.6 551 100.0
C08p38040 Brassica napus HOM05D003827 ORTHO05D004518 3.4e-295 1017.7 551 97.8
BolC8t51378H Brassica oleracea HOM05D003827 ORTHO05D004518 6.0e-292 1006.9 551 97.6
A09p55100 Brassica napus HOM05D003827 ORTHO05D004518 3.8e-270 934.5 556 92.6
BraA09t40917Z Brassica rapa HOM05D003827 ORTHO05D004518 4.6e-268 927.5 555 91.9
BcaC07g42691 Brassica carinata HOM05D003827 ORTHO05D004518 2.2e-206 722.6 560 78.0
CARHR291540 Cardamine hirsuta HOM05D003827 ORTHO05D004518 2.1e-156 556.6 589 62.6
Sp5g00120 Schrenkiella parvula HOM05D003827 ORTHO05D004518 5.5e-144 515.4 589 60.8
AT3G63430 Arabidopsis thaliana HOM05D003827 ORTHO05D004518 1.2e-135 487.6 580 57.6
AL5G46290 Arabidopsis lyrata HOM05D003827 ORTHO05D004518 5.5e-128 462.2 616 55.2
Aa31LG10G17280 Aethionema arabicum HOM05D003827 ORTHO05D004518 2.5e-125 453.4 747 46.5
Thhalv10005863m.g Eutrema salsugineum HOM05D003827 ORTHO05D004518 2.0e-122 443.7 619 54.1
Carub.0005s3005 Capsella rubella HOM05D003827 ORTHO05D004518 1.3e-113 414.5 621 49.1
THA.LOC104817570 Tarenaya hassleriana HOM05D003827 ORTHO05D004518 2.1e-103 380.6 696 45.3
COL.COLO4_06099 Corchorus olitorius HOM05D003827 ORTHO05D004518 2.3e-78 297.4 808 35.3
Phvul.007G175800 Phaseolus vulgaris HOM05D003827 ORTHO05D004518 2.3e-78 297.4 706 37.1
Glyma.02G143400 Glycine max HOM05D003827 ORTHO05D004518 1.2e-77 295.0 708 37.3
Duzib138G1561 Durio zibethinus HOM05D003827 ORTHO05D004518 1.7e-76 291.2 814 35.3
Atru.chr5.1540 Acer truncatum HOM05D003827 ORTHO05D004518 2.2e-76 290.8 798 35.5
Ciclev10018911m.g Citrus clementina HOM05D003827 ORTHO05D004518 8.3e-76 288.9 819 35.5
Potri.005G216300 Populus trichocarpa HOM05D003827 ORTHO05D004518 1.1e-75 288.5 788 34.8
Thecc.01G269500 Theobroma cacao HOM05D003827 ORTHO05D004518 1.8e-75 287.7 803 34.7
Gohir.A11G126200 Gossypium hirsutum HOM05D003827 ORTHO05D004518 3.2e-75 287.0 802 35.2
Prupe.8G233400 Prunus persica HOM05D003827 ORTHO05D004518 5.4e-75 286.2 789 35.6
Gohir.D11G131801 Gossypium hirsutum HOM05D003827 ORTHO05D004518 9.2e-75 285.4 798 35.3
VMungo0720G1763 Vigna mungo HOM05D003827 ORTHO05D004518 9.2e-75 285.4 688 37.2
Manes.05G082700 Manihot esculenta HOM05D003827 ORTHO05D004518 1.2e-74 285.0 810 34.2
Potri.002G046700 Populus trichocarpa HOM05D003827 ORTHO05D004518 3.5e-74 283.5 804 35.0
Sabra05G0165800 Salix brachista HOM05D003827 ORTHO05D004518 7.8e-74 282.3 795 34.2
Gorai.007G140900 Gossypium raimondii HOM05D003827 ORTHO05D004518 1.3e-73 281.6 802 34.5
Duzib133G0640 Durio zibethinus HOM05D003827 ORTHO05D004518 1.7e-73 281.2 809 35.0
Glyma.10G031000 Glycine max HOM05D003827 ORTHO05D004518 1.7e-73 281.2 723 36.4
SalBow4G1883 Salvia bowleyana HOM05D003827 ORTHO05D004518 1.9e-72 277.7 754 35.3
SalBow4G1898 Salvia bowleyana HOM05D003827 ORTHO05D004518 2.5e-72 277.3 754 35.1
RcHm_v2.0_Chr6g0289731 Rosa chinensis HOM05D003827 ORTHO05D004518 3.3e-72 276.9 770 35.2
Cpa.g.c31397 Carica papaya HOM05D003827 ORTHO05D004518 2.1e-71 274.2 819 33.8
Nn1g02509 Nelumbo nucifera HOM05D003827 ORTHO05D004518 4.7e-71 273.1 835 33.8
vmacro02620 Vaccinium macrocarpon HOM05D003827 ORTHO05D004518 1.4e-70 271.6 777 34.5
Ca_08637_v3 Cicer arietinum L. HOM05D003827 ORTHO05D004518 2.3e-70 270.8 681 35.2
MELO3C014319.2 Cucumis melo HOM05D003827 ORTHO05D004518 2.3e-70 270.8 817 34.1
MD03G1256300 Malus domestica HOM05D003827 ORTHO05D004518 2.3e-70 270.8 785 35.0
Sc05g0001120 Simmondsia chinensis HOM05D003827 ORTHO05D004518 3.1e-70 270.4 706 35.4
TPR.G19092 Trifolium pratense HOM05D003827 ORTHO05D004518 4.0e-70 270.0 660 36.5
Manes.01G203100 Manihot esculenta HOM05D003827 ORTHO05D004518 5.2e-70 269.6 802 32.4
AUR62032274 Chenopodium quinoa HOM05D003827 ORTHO05D004518 6.8e-70 269.2 721 36.6
SGA_v2.0_scaffold81G26054 Striga asiatica HOM05D003827 ORTHO05D004518 1.5e-69 268.1 719 35.7
Dinv22492 Davidia involucrata HOM05D003827 ORTHO05D004518 2.0e-69 267.7 823 34.5
Migut.D00347 Erythranthe guttata HOM05D003827 ORTHO05D004518 2.0e-69 267.7 805 34.3
Migut.N02178 Erythranthe guttata HOM05D003827 ORTHO05D004518 2.6e-69 267.3 768 35.5
MSTRG.21519 Avicennia marina HOM05D003827 ORTHO05D004518 4.4e-69 266.5 824 33.9
Ca_09721_v3 Cicer arietinum L. HOM05D003827 ORTHO05D004518 7.5e-69 265.8 714 34.7
CsaV3_2G013800 Cucumis sativus L. HOM05D003827 ORTHO05D004518 1.7e-68 264.6 792 33.2
Cfa006213 Carpinus fangiana HOM05D003827 ORTHO05D004518 2.2e-68 264.2 814 34.6
Sed0018560 Sechium edule HOM05D003827 ORTHO05D004518 6.4e-68 262.7 808 32.9
Medtr7g095890 Medicago truncatula HOM05D003827 ORTHO05D004518 8.3e-68 262.3 672 35.1
Duzib211G0278 Durio zibethinus HOM05D003827 ORTHO05D004518 1.1e-67 261.9 807 33.1
AUR62011961 Chenopodium quinoa HOM05D003827 ORTHO05D004518 1.4e-67 261.5 735 36.1
Actinidia19972 Actinidia chinensis HOM05D003827 ORTHO05D004518 2.4e-67 260.8 718 35.8
Lj1A56T63 Lonicera japonica HOM05D003827 ORTHO05D004518 3.2e-67 260.4 807 33.7
Haze_04629 Corylus avellana HOM05D003827 ORTHO05D004518 4.1e-67 260.0 826 34.0
FAN24G2611 Fragaria x ananassa HOM05D003827 ORTHO05D004518 4.1e-67 260.0 791 34.3
Ah.02g111340 Amaranthus hybridus HOM05D003827 ORTHO05D004518 5.4e-67 259.6 744 33.9
ClCG07G000540 Citrullus lanatus HOM05D003827 ORTHO05D004518 5.4e-67 259.6 816 34.4
EL10Ac5g10483 Beta vulgaris HOM05D003827 ORTHO05D004518 7.0e-67 259.2 788 33.2
QL12p042499 Quercus lobata HOM05D003827 ORTHO05D004518 2.0e-66 257.7 802 33.8
FAN15G1200 Fragaria x ananassa HOM05D003827 ORTHO05D004518 2.7e-66 257.3 795 34.3
Lj5g0023922 Lotus japonicus HOM05D003827 ORTHO05D004518 3.5e-66 256.9 723 34.0
arahy.Tifrunner.gnm1.ann1.900HG3 Arachis hypogaea HOM05D003827 ORTHO05D004518 6.0e-66 256.1 779 33.6
Medtr1g071070 Medicago truncatula HOM05D003827 ORTHO05D004518 6.0e-66 256.1 726 34.4
Sabra02G0037600 Salix brachista HOM05D003827 ORTHO05D004518 1.0e-65 255.4 875 31.3
arahy.Tifrunner.gnm1.ann1.735JS3 Arachis hypogaea HOM05D003827 ORTHO05D004518 1.7e-65 254.6 776 34.1
Lalb_Chr06g0162731 Lupinus albus HOM05D003827 ORTHO05D004518 1.7e-65 254.6 614 36.2
Lj1g0025199 Lotus japonicus HOM05D003827 ORTHO05D004518 2.3e-65 254.2 700 34.4
Psat6g058320 Pisum sativum HOM05D003827 ORTHO05D004518 2.3e-65 254.2 747 34.0
SalBow6G3195 Salvia bowleyana HOM05D003827 ORTHO05D004518 2.3e-65 254.2 768 34.5
Gorai.004G075700 Gossypium raimondii HOM05D003827 ORTHO05D004518 3.0e-65 253.8 781 33.7
FAN20G2722 Fragaria x ananassa HOM05D003827 ORTHO05D004518 8.6e-65 252.3 796 33.3
MD11G1277100 Malus domestica HOM05D003827 ORTHO05D004518 1.1e-64 251.9 773 34.3
FAN27G1464 Fragaria x ananassa HOM05D003827 ORTHO05D004518 1.9e-64 251.1 794 33.4
PGR119G2143 Punica granatum HOM05D003827 ORTHO05D004518 7.3e-64 249.2 777 34.5
Gohir.A07G207900 Gossypium hirsutum HOM05D003827 ORTHO05D004518 6.2e-63 246.1 793 33.4
CSS0001059 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 1.1e-62 245.4 798 34.0
Aqoxy5G00378 Aquilegia oxysepala HOM05D003827 ORTHO05D004518 1.4e-62 245.0 798 33.3
HanXRQChr06g0177881 Helianthus annuus HOM05D003827 ORTHO05D004518 4.0e-62 243.4 733 33.6
Hund02868 Selenicereus undatus HOM05D003827 ORTHO05D004518 1.5e-61 241.5 707 34.8
MSTRG.18275 Avicennia marina HOM05D003827 ORTHO05D004518 2.0e-61 241.1 812 31.9
Peaxi162Scf01038g00148 Petunia axillaris HOM05D003827 ORTHO05D004518 2.0e-61 241.1 807 33.1
Lsat_1_v5_gn_5_184780 Lactuca sativa HOM05D003827 ORTHO05D004518 2.6e-61 240.7 808 32.3
Oeu058798.1 Olea europaea HOM05D003827 ORTHO05D004518 2.6e-61 240.7 678 35.1
TAR362G1025 Trochodendron aralioides HOM05D003827 ORTHO05D004518 2.6e-61 240.7 834 31.7
Nitab4.5_0000617g0200 Nicotiana tabacum HOM05D003827 ORTHO05D004518 4.4e-61 240.0 817 32.6
Aqoxy2G03489 Aquilegia oxysepala HOM05D003827 ORTHO05D004518 1.3e-60 238.4 744 32.9
MSTRG.17468 Avicennia marina HOM05D003827 ORTHO05D004518 1.7e-60 238.0 809 33.7
Nitab4.5_0010556g0020 Nicotiana tabacum HOM05D003827 ORTHO05D004518 2.9e-60 237.3 817 33.2
PGSC0003DMG400022986 Solanum tuberosum HOM05D003827 ORTHO05D004518 2.9e-60 237.3 810 32.7
Eucgr.B01477 Eucalyptus grandis HOM05D003827 ORTHO05D004518 4.9e-60 236.5 824 32.3
Sopen07g004600 Solanum pennellii HOM05D003827 ORTHO05D004518 4.9e-60 236.5 811 32.9
arahy.Tifrunner.gnm1.ann1.S69P4W Arachis hypogaea HOM05D003827 ORTHO05D004518 6.4e-60 236.1 775 31.9
Solyc07g008670.3 Solanum lycopersicum HOM05D003827 ORTHO05D004518 6.4e-60 236.1 811 33.0
Psat3g061520 Pisum sativum HOM05D003827 ORTHO05D004518 1.1e-59 235.3 695 33.1
CANSAT25G1147 Cannabis sativa HOM05D003827 ORTHO05D004518 1.4e-59 235.0 806 32.4
CiPaw.07G086100 Carya illinoinensis HOM05D003827 ORTHO05D004518 2.7e-58 230.7 825 31.2
DCAR_012508 Daucus carota HOM05D003827 ORTHO05D004518 4.6e-58 229.9 731 32.3
Cc00_g27210 Coffea canephora HOM05D003827 ORTHO05D004518 1.3e-57 228.4 832 32.3
Gohir.A08G062500 Gossypium hirsutum HOM05D003827 ORTHO05D004518 2.3e-57 227.6 682 33.3
Gohir.D08G071700 Gossypium hirsutum HOM05D003827 ORTHO05D004518 3.0e-57 227.3 701 33.7
MBI04_g36520_MAGBIO Magnolia biondii HOM05D003827 ORTHO05D004518 3.0e-57 227.3 797 32.7
MSTRG.12545 Avicennia marina HOM05D003827 ORTHO05D004518 4.3e-56 223.4 798 32.0
HanXRQChr01g0006931 Helianthus annuus HOM05D003827 ORTHO05D004518 9.5e-56 222.2 804 31.3
Rhsim13G0030000 Rhododendron simsii HOM05D003827 ORTHO05D004518 1.4e-54 218.4 761 31.3
arahy.Tifrunner.gnm1.ann1.X14VTN Arachis hypogaea HOM05D003827 ORTHO05D004518 6.8e-54 216.1 816 30.4
Rhsim01G0271400 Rhododendron simsii HOM05D003827 ORTHO05D004518 8.9e-54 215.7 771 32.3
ECA248G3364 Erigeron canadensis HOM05D003827 ORTHO05D004518 1.7e-52 211.5 772 32.3
vmacro14883 Vaccinium macrocarpon HOM05D003827 ORTHO05D004518 1.7e-52 211.5 734 31.7
Actinidia24929 Actinidia chinensis HOM05D003827 ORTHO05D004518 3.8e-52 210.3 769 30.9
DCAR_002692 Daucus carota HOM05D003827 ORTHO05D004518 3.8e-52 210.3 745 31.1
GSVIVG01003137001 Vitis vinifera HOM05D003827 ORTHO05D004518 3.2e-51 207.2 700 33.7
DCAR_005854 Daucus carota HOM05D003827 ORTHO05D004518 8.7e-49 199.1 635 33.7
SHI10022 Sapria himalayana HOM05D003827 ORTHO05D004518 2.1e-47 194.5 712 32.0
PSO210G6408 Papaver somniferum HOM05D003827 ORTHO05D004518 2.8e-47 194.1 845 28.8
Actinidia21149 Actinidia chinensis HOM05D003827 ORTHO05D004518 5.2e-46 189.9 684 31.9
PSO832G0360 Papaver somniferum HOM05D003827 ORTHO05D004518 5.2e-46 189.9 846 28.6
Dinv34555 Davidia involucrata HOM05D003827 ORTHO05D004518 6.4e-44 183.0 627 33.5
TPR.G39105 Trifolium pratense HOM05D003827 ORTHO05D004518 1.6e-42 178.3 255 44.3
CDE07G1346 Ceratophyllum demersum HOM05D003827 ORTHO05D004518 3.5e-42 177.2 807 29.7
Ah.11g050100 Amaranthus hybridus HOM05D003827 ORTHO05D004518 5.6e-40 169.9 269 45.0
Gorai.001G241900 Gossypium raimondii HOM05D003827 ORTHO05D004518 6.2e-39 166.4 709 29.1
Lalb_Chr01g0019961 Lupinus albus HOM05D003827 ORTHO05D004518 1.8e-38 164.9 448 31.7
ECA247G1386 Erigeron canadensis HOM05D003827 ORTHO05D004518 5.8e-37 159.8 639 31.5
Gohir.D07G213901 Gossypium hirsutum HOM05D003827 ORTHO05D004518 1.4e-35 155.2 340 37.6
CDE06G2016 Ceratophyllum demersum HOM05D003827 ORTHO05D004518 5.4e-35 153.3 718 29.0
Lsat_1_v5_gn_9_7940 Lactuca sativa HOM05D003827 ORTHO05D004518 4.6e-34 150.2 777 28.8
FvH4_2g22810 Fragaria vesca HOM05D003827 ORTHO05D004518 6.0e-34 149.8 601 32.3
CSS0010046 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 3.0e-33 147.5 621 30.0
HPP92_024347 Vanilla planifolia HOM05D003827 ORTHO05D004518 6.7e-33 146.4 682 30.9
Oeu002272.1 Olea europaea HOM05D003827 ORTHO05D004518 4.8e-31 140.2 611 29.6
HanXRQChr15g0466901 Helianthus annuus HOM05D003827 ORTHO05D004518 9.0e-30 136.0 663 28.2
TAR633G1445 Trochodendron aralioides HOM05D003827 ORTHO05D004518 1.2e-29 135.6 378 37.6
Nn3g19462 Nelumbo nucifera HOM05D003827 ORTHO05D004518 2.9e-28 131.0 401 35.9
Zm00001eb200650 Zea mays HOM05D003827 ORTHO05D004518 7.1e-27 126.3 635 29.3
HPP92_020343 Vanilla planifolia HOM05D003827 ORTHO05D004518 1.2e-26 125.6 554 29.4
Os11g0587300 Oryza sativa ssp. japonica HOM05D003827 ORTHO05D004518 2.3e-25 121.3 744 28.2
TAR633G0743 Trochodendron aralioides HOM05D003827 ORTHO05D004518 6.7e-25 119.8 210 40.0
CSS0036794 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 1.4e-22 112.1 181 45.3
Oeu011513.1 Olea europaea HOM05D003827 ORTHO05D004518 9.0e-22 109.4 295 39.0
CSS0004377 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 3.4e-21 107.5 174 44.3
ATR0665G375 Amborella trichopoda HOM05D003827 ORTHO05D004518 3.8e-20 104.0 576 28.0
CSS0017033 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 1.9e-19 101.7 174 42.0
CSS0011133 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 2.7e-18 97.8 173 42.2
CSS0039890 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 7.9e-18 96.3 170 42.4
TPR.G39068 Trifolium pratense HOM05D003827 ORTHO05D000002 1.0e-17 95.9 373 32.4
QL11p007191 Quercus lobata HOM05D000005 ORTHO05D000012 1.2e-10 72.4 134 38.8
BcaC05g30330 Brassica carinata HOM05D001693 ORTHO05D001588 4.6e-10 70.5 250 30.0
Nn5g28224 Nelumbo nucifera HOM05D003827 ORTHO05D004518 2.3e-09 68.2 185 37.3
SEGI_41162 Sequoiadendron giganteum HOM05D001693 ORTHO05D001588 2.5e-08 64.7 525 24.2
HanXRQChr10g0282171 Helianthus annuus HOM05D003827 ORTHO05D004518 4.3e-08 63.9 286 33.2
SEGI_17249 Sequoiadendron giganteum HOM05D001693 ORTHO05D001588 4.3e-08 63.9 612 24.0
Lj4C120T11 Lonicera japonica HOM05D001693 ORTHO05D001588 7.4e-08 63.2 297 26.3
Lsat_1_v5_gn_2_89521 Lactuca sativa HOM05D001693 ORTHO05D001588 2.8e-07 61.2 271 26.6
A09p59790 Brassica napus HOM05D001693 ORTHO05D001588 4.8e-07 60.5 603 24.2
MELO3C002039.2 Cucumis melo HOM05D001693 ORTHO05D001588 4.8e-07 60.5 313 26.8
Hma1.2p1_0210F.1_g089550 Hydrangea macrophylla HOM05D003827 ORTHO05D004518 6.3e-07 60.1 73 50.7
MBI19_g13319_MAGBIO Magnolia biondii HOM05D001693 ORTHO05D001588 6.3e-07 60.1 316 26.9
THA.LOC104812109 Tarenaya hassleriana HOM05D001693 ORTHO05D001588 6.3e-07 60.1 303 27.1
Rhsim08G0144700 Rhododendron simsii HOM05D001693 ORTHO05D001588 1.1e-06 59.3 610 25.9
THA.LOC104802976 Tarenaya hassleriana HOM05D001693 ORTHO05D001588 1.1e-06 59.3 275 25.5
Manes.14G086600 Manihot esculenta HOM05D001693 ORTHO05D001588 1.8e-06 58.5 305 25.6
ECA232G0439 Erigeron canadensis HOM05D001693 ORTHO05D001588 2.4e-06 58.2 289 26.3
HanXRQChr15g0488921 Helianthus annuus HOM05D001693 ORTHO05D001588 2.4e-06 58.2 572 24.3
Ah.11g050110 Amaranthus hybridus HOM05D003827 ORTHO05D004518 3.1e-06 57.8 42 66.7
CSS0048058 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 3.1e-06 57.8 61 55.7
CSS0021062 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D033864 5.3e-06 57.0 61 55.7
AUR62021539 Chenopodium quinoa HOM05D001693 ORTHO05D001588 5.3e-06 57.0 331 27.2
Duzib205G1195 Durio zibethinus HOM05D001693 ORTHO05D001588 5.3e-06 57.0 320 26.2
HanXRQChr07g0199721 Helianthus annuus HOM05D001693 ORTHO05D001588 5.3e-06 57.0 400 24.5
Lsat_1_v5_gn_3_96320 Lactuca sativa HOM05D001693 ORTHO05D001588 5.3e-06 57.0 581 22.7
Aa31LG5G12700 Aethionema arabicum HOM05D001693 ORTHO05D001588 6.9e-06 56.6 252 25.8
CSS0007174 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 6.9e-06 56.6 61 55.7
CSS0009045 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 6.9e-06 56.6 61 55.7
CSS0029515 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 6.9e-06 56.6 61 55.7
CSS0035692 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 6.9e-06 56.6 61 55.7
CSS0045357 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 6.9e-06 56.6 61 55.7
Nn1g00777 Nelumbo nucifera HOM05D003827 ORTHO05D004518 6.9e-06 56.6 171 36.3
CSS0018040 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 9.1e-06 56.2 61 54.1


User provided reference genes

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