Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40807 Brassica carinata HOM05D007181 ORTHO05D008722 1.4e-99 366.3 182 100.0
C08p38020 Brassica napus HOM05D007181 ORTHO05D008722 3.0e-99 365.2 182 99.5
BolC8t51376H Brassica oleracea HOM05D007181 ORTHO05D008722 3.0e-99 365.2 182 99.5
A09p55080 Brassica napus HOM05D007181 ORTHO05D008722 5.9e-95 350.9 183 96.7
BraA09t40915Z Brassica rapa HOM05D007181 ORTHO05D008722 5.5e-93 344.4 182 95.1
BcaB03g13697 Brassica carinata HOM05D007181 ORTHO05D008722 6.8e-75 284.3 183 81.4
Sp5g00160 Schrenkiella parvula HOM05D007181 ORTHO05D008722 2.0e-74 282.7 180 80.6
Thhalv10006272m.g Eutrema salsugineum HOM05D007181 ORTHO05D008722 9.8e-66 253.8 170 76.5
BcaC07g42693 Brassica carinata HOM05D007181 ORTHO05D008722 1.7e-54 216.5 176 68.8
Carub.0005s3001 Capsella rubella HOM05D007181 ORTHO05D008722 5.6e-53 211.5 173 65.9
AT3G63390 Arabidopsis thaliana HOM05D007181 ORTHO05D008722 6.2e-52 208.0 176 64.2
AL5G46250 Arabidopsis lyrata HOM05D007181 ORTHO05D008722 7.5e-50 201.1 174 62.6
CARHR291580 Cardamine hirsuta HOM05D007181 ORTHO05D008722 1.9e-48 196.4 175 60.6
Potri.002G047400 Populus trichocarpa HOM05D007181 ORTHO05D008722 5.4e-48 194.9 159 62.3
Sabra02G0038300 Salix brachista HOM05D007181 ORTHO05D008722 1.0e-46 190.7 156 62.8
Gorai.004G217700 Gossypium raimondii HOM05D007181 ORTHO05D008722 2.3e-46 189.5 160 61.2
THA.LOC104817569 Tarenaya hassleriana HOM05D007181 ORTHO05D008722 3.0e-46 189.1 189 56.6
Thecc.01G270500 Theobroma cacao HOM05D007181 ORTHO05D008722 1.6e-44 183.3 160 60.0
Gohir.A05G078500 Gossypium hirsutum HOM05D000144 ORTHO05D008722 4.7e-44 181.8 160 55.6
Aa31LG10G17220 Aethionema arabicum HOM05D007181 ORTHO05D008722 6.2e-44 181.4 191 57.1
Gorai.007G100900 Gossypium raimondii HOM05D007181 ORTHO05D008722 3.1e-43 179.1 160 56.9
Gohir.D11G094500 Gossypium hirsutum HOM05D007181 ORTHO05D008722 4.0e-43 178.7 160 58.8
Gohir.D08G205700 Gossypium hirsutum HOM05D007181 ORTHO05D008722 1.2e-42 177.2 159 57.9
Lj1g0009574 Lotus japonicus HOM05D007181 ORTHO05D008722 8.3e-41 171.0 182 48.4
Ciclev10022317m.g Citrus clementina HOM05D007181 ORTHO05D008722 3.2e-40 169.1 183 51.4
Duzib211G0516 Durio zibethinus HOM05D007181 ORTHO05D008722 5.4e-40 168.3 160 57.5
Gohir.A11G090066 Gossypium hirsutum HOM05D007181 ORTHO05D008722 9.2e-40 167.5 160 55.6
arahy.Tifrunner.gnm1.ann1.M9RGYA Arachis hypogaea HOM05D007181 ORTHO05D008722 4.6e-39 165.2 156 53.2
CSS0010421 Camellia sinensis var. sinensis HOM05D007181 ORTHO05D008722 4.6e-39 165.2 159 51.6
PGSC0003DMG400004278 Solanum tuberosum HOM05D007181 ORTHO05D008722 1.7e-38 163.3 136 57.4
Hma1.2p1_0760F.1_g214120 Hydrangea macrophylla HOM05D007181 ORTHO05D008722 8.6e-38 161.0 195 46.7
Prupe.8G234100 Prunus persica HOM05D007181 ORTHO05D008722 1.5e-37 160.2 156 53.8
RcHm_v2.0_Chr6g0289821 Rosa chinensis HOM05D007181 ORTHO05D008722 1.9e-37 159.8 178 47.8
Gohir.A08G187400 Gossypium hirsutum HOM05D007181 ORTHO05D008722 2.5e-37 159.5 160 53.8
Cpa.g.sc52.129 Carica papaya HOM05D007181 ORTHO05D008722 3.3e-37 159.1 159 53.5
Solyc12g100320.2 Solanum lycopersicum HOM05D007181 ORTHO05D008722 5.6e-37 158.3 136 55.9
Atru.chr5.1530 Acer truncatum HOM05D007181 ORTHO05D008722 9.5e-37 157.5 158 55.1
CSS0018066 Camellia sinensis var. sinensis HOM05D007181 ORTHO05D008722 1.6e-36 156.8 155 51.0
CANSAT25G0029 Cannabis sativa HOM05D007181 ORTHO05D008722 1.6e-36 156.8 158 48.1
COL.COLO4_09179 Corchorus olitorius HOM05D007181 ORTHO05D008722 1.6e-36 156.8 160 55.0
Actinidia19968 Actinidia chinensis HOM05D007181 ORTHO05D008722 2.8e-36 156.0 135 55.6
Sopen12g034950 Solanum pennellii HOM05D007181 ORTHO05D008722 2.8e-36 156.0 136 55.9
Haze_04637 Corylus avellana HOM05D000129 ORTHO05D000144 6.2e-36 154.8 154 49.4
Phvul.001G155300 Phaseolus vulgaris HOM05D007181 ORTHO05D008722 6.2e-36 154.8 180 48.9
Haze_04636 Corylus avellana HOM05D007181 ORTHO05D008722 1.4e-35 153.7 154 49.4
Aqoxy7G04176 Aquilegia oxysepala HOM05D007181 ORTHO05D008722 1.8e-35 153.3 140 51.4
Manes.05G082200 Manihot esculenta HOM05D007181 ORTHO05D008722 1.8e-35 153.3 160 53.1
Peaxi162Scf00146g10111 Petunia axillaris HOM05D007181 ORTHO05D008722 8.9e-35 151.0 167 49.1
HPP92_028259 Vanilla planifolia HOM05D007181 ORTHO05D008722 8.9e-35 151.0 141 52.5
Nitab4.5_0003555g0080 Nicotiana tabacum HOM05D007181 ORTHO05D008722 1.2e-34 150.6 136 53.7
PSO210G2677 Papaver somniferum HOM05D007181 ORTHO05D008722 1.2e-34 150.6 167 48.5
VMungo1383G2224 Vigna mungo HOM05D007181 ORTHO05D008722 2.6e-34 149.4 180 47.8
AUR62032277 Chenopodium quinoa HOM05D007181 ORTHO05D008722 3.4e-34 149.1 153 49.7
MBI13_g01691_MAGBIO Magnolia biondii HOM05D007181 ORTHO05D008722 4.4e-34 148.7 153 51.0
Hma1.2p1_1332F.1_g276040 Hydrangea macrophylla HOM05D007181 ORTHO05D008722 5.8e-34 148.3 197 44.2
Nn8g40634 Nelumbo nucifera HOM05D007181 ORTHO05D008722 9.9e-34 147.5 147 53.7
Nn8g40635 Nelumbo nucifera HOM05D007181 ORTHO05D008722 9.9e-34 147.5 186 46.2
Dinv32881 Davidia involucrata HOM05D007181 ORTHO05D008722 1.1e-32 144.1 154 50.6
EL10Ac5g10486 Beta vulgaris HOM05D007181 ORTHO05D008722 2.4e-32 142.9 132 51.5
CAN.G575.12 Capsicum annuum HOM05D007181 ORTHO05D008722 3.2e-32 142.5 136 52.2
FvH4_2g22890 Fragaria vesca HOM05D007181 ORTHO05D008722 4.1e-32 142.1 178 45.5
GSVIVG01003131001 Vitis vinifera HOM05D007181 ORTHO05D008722 5.4e-32 141.7 197 45.2
CDE06G2554 Ceratophyllum demersum HOM05D007181 ORTHO05D008722 7.1e-32 141.4 134 50.7
Lsat_1_v5_gn_5_185100 Lactuca sativa HOM05D007181 ORTHO05D008722 3.5e-31 139.0 134 50.7
AUR62011964 Chenopodium quinoa HOM05D007181 ORTHO05D008722 6.0e-31 138.3 132 51.5
SGA_v2.0_scaffold1G00542 Striga asiatica HOM05D007181 ORTHO05D008722 7.8e-31 137.9 136 52.9
PSO210G2070 Papaver somniferum HOM05D007181 ORTHO05D008722 1.3e-30 137.1 167 44.9
CiPaw.08G110300 Carya illinoinensis HOM05D007181 ORTHO05D008722 1.7e-30 136.7 160 43.1
vmacro02617 Vaccinium macrocarpon HOM05D007181 ORTHO05D008722 1.7e-30 136.7 132 48.5
Ah.11g050140 Amaranthus hybridus HOM05D007181 ORTHO05D008722 5.1e-30 135.2 138 48.6
Glyma.19G160000 Glycine max HOM05D007181 ORTHO05D008722 6.6e-30 134.8 156 48.1
Oeu025775.1 Olea europaea HOM05D007181 ORTHO05D008722 6.6e-30 134.8 135 53.3
Rhsim13G0029700 Rhododendron simsii HOM05D007181 ORTHO05D008722 6.6e-30 134.8 130 50.0
Cc00_g18800 Coffea canephora HOM05D007181 ORTHO05D008722 1.9e-29 133.3 137 48.2
MD03G1257200 Malus domestica HOM05D007181 ORTHO05D008722 1.9e-29 133.3 156 45.5
Sed0014767 Sechium edule HOM05D007181 ORTHO05D008722 2.5e-29 132.9 156 46.8
QL12p042395 Quercus lobata HOM05D007181 ORTHO05D008722 3.3e-29 132.5 154 47.4
PGR044G0699 Punica granatum HOM05D007181 ORTHO05D008722 7.3e-29 131.3 141 48.9
SalBow4G0298 Salvia bowleyana HOM05D007181 ORTHO05D008722 6.2e-28 128.3 191 42.4
SalBow4G3342 Salvia bowleyana HOM05D007181 ORTHO05D008722 6.2e-28 128.3 191 42.4
SalBow6G6987 Salvia bowleyana HOM05D007181 ORTHO05D008722 6.2e-28 128.3 191 42.4
Lj2P1163T10 Lonicera japonica HOM05D007181 ORTHO05D008722 8.1e-28 127.9 140 48.6
Medtr7g095740 Medicago truncatula HOM05D007181 ORTHO05D008722 8.1e-28 127.9 134 48.5
TPR.G19095 Trifolium pratense HOM05D007181 ORTHO05D008722 1.4e-27 127.1 99 56.6
Os11g0616200 Oryza sativa ssp. japonica HOM05D007181 ORTHO05D008722 1.8e-27 126.7 152 46.1
MELO3C001156.2 Cucumis melo HOM05D007181 ORTHO05D008722 6.9e-27 124.8 105 57.1
HanXRQChr01g0005991 Helianthus annuus HOM05D007181 ORTHO05D008722 2.6e-26 122.9 133 48.1
CsaV3_2G013840 Cucumis sativus L. HOM05D007181 ORTHO05D008722 4.4e-26 122.1 103 56.3
SEGI_03897 Sequoiadendron giganteum HOM05D007181 ORTHO05D008722 5.8e-26 121.7 135 48.9
ClCG07G000510 Citrullus lanatus HOM05D007181 ORTHO05D008722 7.6e-26 121.3 156 45.5
Zm00001eb166760 Zea mays HOM05D007181 ORTHO05D008722 9.9e-26 120.9 156 44.2
SHI10021 Sapria himalayana HOM05D007181 ORTHO05D008722 2.9e-25 119.4 135 48.1
MD11G1277900 Malus domestica HOM05D007181 ORTHO05D008722 4.9e-25 118.6 141 47.5
Ca_20981_v3 Cicer arietinum L. HOM05D007181 ORTHO05D008722 6.4e-25 118.2 99 52.5
Pp3c24_16150 Physcomitrium patens HOM05D007181 ORTHO05D008722 1.6e-23 113.6 134 39.6
Pp3c8_19140 Physcomitrium patens HOM05D007181 ORTHO05D008722 4.6e-23 112.1 134 41.0
FAN24G0107 Fragaria x ananassa HOM05D007181 ORTHO05D008722 7.8e-23 111.3 151 41.7
Sc05g0001150 Simmondsia chinensis HOM05D007181 ORTHO05D008722 7.8e-23 111.3 101 53.5
SMO143G0136 Selaginella moellendorffii HOM05D007181 ORTHO05D008722 1.5e-21 107.1 132 40.2
VMungo1215G0236 Vigna mungo HOM05D007181 ORTHO05D008722 2.5e-21 106.3 136 45.6
AagrBONN_evm.TU.Sc2ySwM_362.2054 Anthoceros agrestis HOM05D007181 ORTHO05D008722 1.3e-20 104.0 102 47.1
TAR624G0264 Trochodendron aralioides HOM05D007181 ORTHO05D008722 1.6e-15 87.0 158 34.8
Mapoly0126s0033 Marchantia polymorpha HOM05D007181 ORTHO05D008722 3.5e-15 85.9 101 43.6
Psat3g061320 Pisum sativum HOM05D007181 ORTHO05D008722 5.6e-13 78.6 64 57.8
ATR0099G072 Amborella trichopoda HOM05D007181 ORTHO05D008722 2.6e-10 69.7 110 39.1
ATR0099G083 Amborella trichopoda HOM05D007181 ORTHO05D008722 1.3e-09 67.4 62 51.6
CBR_g39816 Chara braunii HOM05D007181 ORTHO05D008722 8.4e-09 64.7 84 38.1
SMO203G0031 Selaginella moellendorffii HOM05D007181 ORTHO05D008722 6.0e-07 58.5 60 40.0


User provided reference genes

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