Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40736 Brassica carinata HOM05D012658 ORTHO05D010583 1.0e-186 656.8 367 100.0
A09p54480 Brassica napus HOM05D012658 ORTHO05D010583 1.1e-148 530.4 372 85.5
BraA09t40861Z Brassica rapa HOM05D012658 ORTHO05D010583 1.0e-146 523.9 374 84.8
BolC8t51315H Brassica oleracea HOM05D012658 ORTHO05D010583 3.3e-145 518.8 375 84.3
C08p37370 Brassica napus HOM05D012658 ORTHO05D010583 4.6e-139 498.4 376 82.2
Thhalv10006051m.g Eutrema salsugineum HOM05D012658 ORTHO05D010583 5.0e-101 372.1 389 59.6
AL5G45370 Arabidopsis lyrata HOM05D012658 ORTHO05D010583 3.4e-94 349.4 384 57.0
Carub.0005s2928 Capsella rubella HOM05D012658 ORTHO05D010583 9.7e-89 331.3 392 53.8
BcaC07g40779 Brassica carinata HOM05D012658 ORTHO05D010583 4.4e-81 305.8 287 68.6
CARHR172890 Cardamine hirsuta HOM05D012658 ORTHO05D010583 1.2e-78 297.7 386 53.4
A05p34600 Brassica napus HOM05D012658 ORTHO05D010583 1.8e-58 230.7 136 89.7
AT3G62620 Arabidopsis thaliana HOM05D012658 ORTHO05D010583 9.9e-41 171.8 244 55.3
THA.LOC104817467 Tarenaya hassleriana HOM05D012658 ORTHO05D010583 3.3e-28 130.2 395 31.9
Gohir.A11G110800 Gossypium hirsutum HOM05D008757 ORTHO05D010583 2.8e-19 100.5 131 38.9
Hma1.2p1_1302F.1_g274300 Hydrangea macrophylla HOM05D008757 ORTHO05D010583 3.6e-19 100.1 137 38.7
COL.COLO4_23259 Corchorus olitorius HOM05D002981 ORTHO05D003725 1.4e-18 98.2 132 39.4
vmacro15123 Vaccinium macrocarpon HOM05D008757 ORTHO05D010583 1.8e-18 97.8 132 40.2
Gohir.D11G115900 Gossypium hirsutum HOM05D008757 ORTHO05D010583 2.4e-18 97.4 131 38.9
Dinv10074 Davidia involucrata HOM05D008757 ORTHO05D010583 4.0e-18 96.7 180 35.0
Migut.D00097 Erythranthe guttata HOM05D008757 ORTHO05D010583 1.2e-17 95.1 150 38.0
FvH4_5g39560 Fragaria vesca HOM05D008757 ORTHO05D010583 1.3e-16 91.7 174 33.9
FAN13G0940 Fragaria x ananassa HOM05D008757 ORTHO05D010583 2.2e-16 90.9 236 32.6
MD11G1316900 Malus domestica HOM05D008757 ORTHO05D010583 2.9e-16 90.5 171 35.7
FAN18G1448 Fragaria x ananassa HOM05D008757 ORTHO05D010583 3.8e-16 90.1 180 35.0
Sabra02G0159400 Salix brachista HOM05D008757 ORTHO05D010583 4.9e-16 89.7 137 35.8
Potri.002G198200 Populus trichocarpa HOM05D008757 ORTHO05D010583 6.4e-16 89.4 137 37.2
RcHm_v2.0_Chr7g0241871 Rosa chinensis HOM05D008757 ORTHO05D010583 6.4e-16 89.4 228 30.3
FAN08G1681 Fragaria x ananassa HOM05D008757 ORTHO05D010583 1.1e-15 88.6 190 34.2
Rhsim01G0289500 Rhododendron simsii HOM05D008757 ORTHO05D010583 2.4e-15 87.4 413 25.7
Prupe.8G269900 Prunus persica HOM05D008757 ORTHO05D010583 4.2e-15 86.7 194 32.0
Actinidia25837 Actinidia chinensis HOM05D008757 ORTHO05D010583 5.4e-15 86.3 124 38.7
TAR365G0134 Trochodendron aralioides HOM05D008757 ORTHO05D010583 5.4e-15 86.3 128 35.9
TWI18G1222 Tripterygium wilfordii HOM05D008757 ORTHO05D010583 1.2e-14 85.1 139 36.7
FAN04G1474 Fragaria x ananassa HOM05D008757 ORTHO05D010583 2.1e-14 84.3 227 32.2
Lj1A19T23 Lonicera japonica HOM05D008757 ORTHO05D010583 4.6e-14 83.2 130 32.3
MSTRG.18114 Avicennia marina HOM05D008757 ORTHO05D010583 7.9e-14 82.4 138 34.8
GSVIVG01028089001 Vitis vinifera HOM05D008757 ORTHO05D010583 7.9e-14 82.4 172 33.7
Cfa005830 Carpinus fangiana HOM05D008757 ORTHO05D010583 1.3e-13 81.6 387 25.6
CSS0009821 Camellia sinensis var. sinensis HOM05D008757 ORTHO05D010583 1.8e-13 81.3 394 26.6
CSS0028194 Camellia sinensis var. sinensis HOM05D008757 ORTHO05D010583 3.0e-13 80.5 378 26.5
Haze_05014 Corylus avellana HOM05D008757 ORTHO05D010583 4.3e-12 76.6 171 32.2
DCAR_012364 Daucus carota HOM05D008757 ORTHO05D010583 9.6e-12 75.5 157 29.9
SGA_v2.0_scaffold334G49056 Striga asiatica HOM05D008757 ORTHO05D010583 1.3e-11 75.1 163 28.8
ATR0706G029 Amborella trichopoda HOM05D008757 ORTHO05D010583 1.6e-11 74.7 166 31.3
Nitab4.5_0000906g0100 Nicotiana tabacum HOM05D008757 ORTHO05D010583 8.1e-11 72.4 137 35.0
Gorai.007G124100 Gossypium raimondii HOM05D008757 ORTHO05D010583 1.1e-10 72.0 71 46.5
Peaxi162Scf00001g00251 Petunia axillaris HOM05D008757 ORTHO05D010583 1.4e-10 71.6 147 32.7
Solyc01g079630.3 Solanum lycopersicum HOM05D008757 ORTHO05D010583 3.1e-10 70.5 147 33.3
Sopen01g031410 Solanum pennellii HOM05D008757 ORTHO05D010583 5.3e-10 69.7 155 32.9
SEGI_31757 Sequoiadendron giganteum HOM05D008757 ORTHO05D010583 3.4e-09 67.0 127 27.6
QL12p028983 Quercus lobata HOM05D008757 ORTHO05D010583 4.5e-09 66.6 182 30.8
Thecc.01G310700 Theobroma cacao HOM05D008757 ORTHO05D010583 4.5e-09 66.6 76 40.8
Nitab4.5_0000116g0030 Nicotiana tabacum HOM05D008757 ORTHO05D010583 1.1e-07 62.0 319 27.3


User provided reference genes

Program Settings