Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40669 Brassica carinata HOM05D003721 ORTHO05D004303 0.0e+00 1181.0 714 100.0
C08p36410 Brassica napus HOM05D003721 ORTHO05D004303 0.0e+00 1179.1 714 99.9
BolC8t51224H Brassica oleracea HOM05D003721 ORTHO05D004303 0.0e+00 1177.2 714 99.7
A09p53630 Brassica napus HOM05D003721 ORTHO05D004303 0.0e+00 1123.6 712 95.9
BraA09t40785Z Brassica rapa HOM05D003721 ORTHO05D004303 0.0e+00 1121.3 712 95.8
BcaC07g40653 Brassica carinata HOM05D003721 ORTHO05D004303 4.4e-303 1044.3 722 85.2
Sp5g01840 Schrenkiella parvula HOM05D003721 ORTHO05D004303 4.9e-286 987.6 722 85.0
Thhalv10005812m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 1.7e-283 979.2 726 83.9
BcaC07g42682 Brassica carinata HOM05D003721 ORTHO05D004303 1.6e-265 919.5 637 89.2
C06p27570 Brassica napus HOM05D003721 ORTHO05D004303 3.6e-265 918.3 728 81.6
A07p25580 Brassica napus HOM05D003721 ORTHO05D004303 1.4e-261 906.4 723 82.3
BolC6t37925H Brassica oleracea HOM05D003721 ORTHO05D004303 8.1e-257 890.6 740 79.9
BraA07t30199Z Brassica rapa HOM05D003721 ORTHO05D004303 2.2e-254 882.5 736 80.3
AT3G61570 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 1.8e-248 862.8 722 76.6
BcaC08g45136 Brassica carinata HOM05D003721 ORTHO05D004303 1.7e-246 856.3 729 78.3
AL5G43940 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 5.4e-245 851.3 723 76.3
BcaB02g07370 Brassica carinata HOM05D003721 ORTHO05D004303 2.7e-228 795.8 726 73.6
AL4G45430 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 2.1e-212 743.0 736 68.9
AT2G46180 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 2.1e-212 743.0 734 68.3
Sp5g32820 Schrenkiella parvula HOM05D003721 ORTHO05D004303 3.3e-202 709.1 734 66.6
BcaC07g42673 Brassica carinata HOM05D003721 ORTHO05D004303 2.2e-201 706.4 698 68.9
Thhalv10001332m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 1.5e-199 700.3 733 66.3
Aa31LG1G27570 Aethionema arabicum HOM05D003721 ORTHO05D004303 1.6e-188 663.7 741 64.4
Carub.0004s2886 Capsella rubella HOM05D003721 ORTHO05D004303 2.3e-179 633.3 738 61.2
COL.COLO4_06374 Corchorus olitorius HOM05D003721 ORTHO05D004303 4.9e-169 599.0 781 52.0
THA.LOC104817323 Tarenaya hassleriana HOM05D003721 ORTHO05D004303 8.3e-169 598.2 755 60.4
Atru.chr5.592 Acer truncatum HOM05D003721 ORTHO05D004303 1.0e-166 591.3 798 49.6
Ciclev10018933m.g Citrus clementina HOM05D003721 ORTHO05D004303 6.6e-166 588.6 790 53.2
Duzib133G0509 Durio zibethinus HOM05D003721 ORTHO05D004303 1.9e-165 587.0 780 51.3
Thecc.01G351200 Theobroma cacao HOM05D003721 ORTHO05D004303 6.1e-164 582.0 780 51.2
Manes.07G084500 Manihot esculenta HOM05D003721 ORTHO05D004303 6.0e-159 565.5 794 49.5
Cfa003861 Carpinus fangiana HOM05D003721 ORTHO05D004303 7.3e-157 558.5 801 48.9
Dinv32529 Davidia involucrata HOM05D003721 ORTHO05D004303 2.8e-156 556.6 806 48.3
QL04p055909 Quercus lobata HOM05D003721 ORTHO05D004303 3.1e-155 553.1 793 48.9
Ca_07946_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 4.0e-155 552.7 741 51.7
Glyma.07G062500 Glycine max HOM05D003721 ORTHO05D004303 6.8e-155 552.0 753 49.3
Glyma.16G030600 Glycine max HOM05D003721 ORTHO05D004303 6.8e-155 552.0 753 50.7
Potri.014G091300 Populus trichocarpa HOM05D003721 ORTHO05D004303 8.3e-153 545.0 790 47.5
Potri.002G165500 Populus trichocarpa HOM05D003721 ORTHO05D004303 1.1e-152 544.7 795 47.0
CSS0038344 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 1.4e-152 544.3 784 47.8
CSS0014201 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 5.4e-152 542.3 785 47.9
Lalb_Chr17g0338961 Lupinus albus HOM05D003721 ORTHO05D004303 7.8e-151 538.5 776 47.2
Medtr7g079200 Medicago truncatula HOM05D003721 ORTHO05D004303 7.8e-151 538.5 739 51.2
TWI59G1183 Tripterygium wilfordii HOM05D003721 ORTHO05D004303 1.0e-150 538.1 798 47.4
Phvul.010G105500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 5.1e-150 535.8 703 54.1
Lj1g0019249 Lotus japonicus HOM05D003721 ORTHO05D004303 1.5e-149 534.3 740 51.8
FAN03G0785 Fragaria x ananassa HOM05D003721 ORTHO05D004303 9.5e-149 531.6 780 49.7
VMungo0331G1476 Vigna mungo HOM05D003721 ORTHO05D004303 9.5e-149 531.6 736 49.3
Lj7A506T70 Lonicera japonica HOM05D003721 ORTHO05D004303 1.2e-148 531.2 758 51.3
Sopen01g039000 Solanum pennellii HOM05D003721 ORTHO05D004303 3.6e-148 529.6 686 51.0
RcHm_v2.0_Chr1g0357861 Rosa chinensis HOM05D003721 ORTHO05D004303 8.1e-148 528.5 781 50.6
GSVIVG01027009001 Vitis vinifera HOM05D003721 ORTHO05D004303 1.4e-147 527.7 728 52.9
Solyc01g095210.3 Solanum lycopersicum HOM05D003721 ORTHO05D004303 3.1e-147 526.6 729 49.0
Gorai.008G119300 Gossypium raimondii HOM05D003721 ORTHO05D004303 5.2e-147 525.8 772 53.4
vmacro13221 Vaccinium macrocarpon HOM05D003721 ORTHO05D004303 8.9e-147 525.0 840 45.2
FAN10G1929 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.2e-146 524.6 780 50.5
Gohir.D12G110000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.2e-146 524.6 772 47.9
FAN10G1794 Fragaria x ananassa HOM05D003721 ORTHO05D004303 4.4e-146 522.7 780 50.5
Gohir.A12G106100 Gossypium hirsutum HOM05D003721 ORTHO05D004303 4.4e-146 522.7 776 51.9
Glyma.09G253700 Glycine max HOM05D003721 ORTHO05D004303 5.8e-146 522.3 695 50.5
CANSAT94G0013 Cannabis sativa HOM05D003721 ORTHO05D004303 7.6e-146 521.9 785 47.4
FvH4_7g15532 Fragaria vesca HOM05D003721 ORTHO05D004303 1.7e-145 520.8 780 50.9
FAN06G3247 Fragaria x ananassa HOM05D003721 ORTHO05D004303 4.9e-145 519.2 780 50.9
arahy.Tifrunner.gnm1.ann1.X01UQ7 Arachis hypogaea HOM05D003721 ORTHO05D004303 6.4e-145 518.8 745 48.6
Glyma.18G239200 Glycine max HOM05D003721 ORTHO05D004303 8.3e-145 518.5 746 48.3
TPR.G29569 Trifolium pratense HOM05D003721 ORTHO05D004303 1.9e-144 517.3 778 46.4
CiPaw.01G068800 Carya illinoinensis HOM05D003721 ORTHO05D004303 6.0e-143 512.3 788 47.3
arahy.Tifrunner.gnm1.ann1.J8U9TP Arachis hypogaea HOM05D003721 ORTHO05D004303 2.3e-142 510.4 697 49.6
Sabra14G0066200 Salix brachista HOM05D003721 ORTHO05D004303 3.0e-142 510.0 833 44.7
FAN06G4946 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.9e-141 507.3 804 50.0
Dinv43871 Davidia involucrata HOM05D003721 ORTHO05D004303 3.3e-141 506.5 802 45.9
PGR031G3178 Punica granatum HOM05D003721 ORTHO05D004303 5.6e-141 505.8 772 50.0
arahy.Tifrunner.gnm1.ann1.QXLJ4L Arachis hypogaea HOM05D003721 ORTHO05D004303 1.6e-140 504.2 686 49.6
Nn1g01721 Nelumbo nucifera HOM05D003721 ORTHO05D004303 2.8e-140 503.4 810 46.0
TAR629G3186 Trochodendron aralioides HOM05D003721 ORTHO05D004303 2.8e-140 503.4 813 44.8
Gohir.A11G093000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 2.4e-139 500.4 748 47.3
CSS0042065 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 3.1e-139 500.0 771 46.4
HanXRQChr06g0166991 Helianthus annuus HOM05D003721 ORTHO05D004303 5.2e-139 499.2 691 54.8
CARHR141460 Cardamine hirsuta HOM05D003721 ORTHO05D004303 1.2e-138 498.0 462 73.6
TPR.G18168 Trifolium pratense HOM05D003721 ORTHO05D004303 1.2e-138 498.0 738 51.2
Ah.05g180090 Amaranthus hybridus HOM05D003721 ORTHO05D004303 1.5e-138 497.7 714 55.0
Sed0002636 Sechium edule HOM05D003721 ORTHO05D004303 1.5e-138 497.7 777 49.0
CsaV3_6G000920 Cucumis sativus L. HOM05D003721 ORTHO05D004303 3.4e-138 496.5 753 50.2
MD07G1130300 Malus domestica HOM05D003721 ORTHO05D004303 3.4e-138 496.5 788 44.9
Duzib138G0478 Durio zibethinus HOM05D003721 ORTHO05D004303 1.7e-137 494.2 796 45.1
Hund16678 Selenicereus undatus HOM05D003721 ORTHO05D004303 1.7e-137 494.2 728 49.2
Sed0001790 Sechium edule HOM05D003721 ORTHO05D004303 3.8e-137 493.0 787 45.7
Peaxi162Scf00020g01717 Petunia axillaris HOM05D003721 ORTHO05D004303 1.9e-136 490.7 784 45.7
AUR62004419 Chenopodium quinoa HOM05D003721 ORTHO05D004303 4.2e-136 489.6 710 48.3
arahy.Tifrunner.gnm1.ann1.M56506 Arachis hypogaea HOM05D003721 ORTHO05D004303 1.2e-135 488.0 676 48.2
Prupe.2G178900 Prunus persica HOM05D003721 ORTHO05D004303 1.6e-135 487.6 762 45.5
ECA240G1536 Erigeron canadensis HOM05D003721 ORTHO05D004303 2.3e-134 483.8 741 46.7
AUR62022625 Chenopodium quinoa HOM05D003721 ORTHO05D004303 8.7e-134 481.9 710 47.9
CAN.G78.136 Capsicum annuum HOM05D003721 ORTHO05D004303 9.6e-133 478.4 773 45.8
Rhsim07G0009400 Rhododendron simsii HOM05D003721 ORTHO05D004303 2.1e-132 477.2 938 39.9
Cc02_g38690 Coffea canephora HOM05D003721 ORTHO05D004303 4.8e-132 476.1 773 45.4
ClCG06G003380 Citrullus lanatus HOM05D003721 ORTHO05D004303 9.9e-130 468.4 798 46.2
DCAR_008641 Daucus carota HOM05D003721 ORTHO05D004303 9.3e-128 461.8 783 44.6
MD01G1072600 Malus domestica HOM05D003721 ORTHO05D004303 9.3e-128 461.8 791 49.2
Ca_03491_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 3.5e-127 459.9 722 44.7
Gorai.007G104100 Gossypium raimondii HOM05D003721 ORTHO05D004303 4.6e-127 459.5 775 47.4
Nitab4.5_0003501g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 4.6e-127 459.5 766 46.3
PSO170G3080 Papaver somniferum HOM05D003721 ORTHO05D004303 1.3e-126 458.0 752 43.2
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 2.3e-126 457.2 771 44.2
Nitab4.5_0000915g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 7.3e-125 452.2 754 43.8
Actinidia20169 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.6e-124 451.1 767 43.8
Migut.B01806 Erythranthe guttata HOM05D003721 ORTHO05D004303 1.2e-122 444.9 771 45.9
Eucgr.D02329 Eucalyptus grandis HOM05D003721 ORTHO05D004303 1.2e-122 444.9 728 44.9
EL10Ac1g00346 Beta vulgaris HOM05D003721 ORTHO05D004303 9.9e-122 441.8 740 44.7
Medtr8g028445 Medicago truncatula HOM05D003721 ORTHO05D004303 6.4e-121 439.1 711 44.9
Phvul.008G057500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 6.4e-121 439.1 766 48.0
PSO063G0643 Papaver somniferum HOM05D003721 ORTHO05D004303 9.3e-120 435.3 784 41.2
SalBow3G1665 Salvia bowleyana HOM05D003721 ORTHO05D004303 2.7e-119 433.7 760 47.4
MSTRG.20868 Avicennia marina HOM05D003721 ORTHO05D004303 6.0e-119 432.6 769 48.8
Sc23g0002500 Simmondsia chinensis HOM05D003721 ORTHO05D004303 3.0e-118 430.3 702 45.2
Psat3g105680 Pisum sativum HOM05D003721 ORTHO05D004303 7.4e-117 425.6 618 46.6
VMungo1383G3272 Vigna mungo HOM05D003721 ORTHO05D004303 2.0e-114 417.5 693 49.4
Gohir.D11G097866 Gossypium hirsutum HOM05D003721 ORTHO05D004303 4.9e-113 412.9 607 49.8
Cpa.g.sc11.59 Carica papaya HOM05D003721 ORTHO05D004303 8.4e-113 412.1 502 52.2
Lsat_1_v5_gn_3_138600 Lactuca sativa HOM05D003721 ORTHO05D004303 2.1e-111 407.5 746 44.9
MBI07_g11740_MAGBIO Magnolia biondii HOM05D003721 ORTHO05D004303 6.0e-111 406.0 811 41.2
Haze_15575 Corylus avellana HOM05D003721 ORTHO05D004303 5.1e-110 402.9 614 47.1
Haze_15580 Corylus avellana HOM05D003721 ORTHO05D004303 2.5e-109 400.6 613 47.0
unitig_52.g17061 Utricularia gibba HOM05D003721 ORTHO05D004303 6.9e-107 392.5 713 45.9
MELO3C021177.2 Cucumis melo HOM05D003721 ORTHO05D004303 1.7e-105 387.9 697 45.2
Lalb_Chr04g0259321 Lupinus albus HOM05D003721 ORTHO05D004303 1.9e-104 384.4 478 52.5
Aqoxy5G04062 Aquilegia oxysepala HOM05D003721 ORTHO05D004303 3.5e-103 380.2 809 39.1
BcaC07g40657 Brassica carinata HOM05D003721 ORTHO05D004303 4.6e-103 379.8 250 88.0
CDE02G2110 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 1.4e-99 368.2 748 40.0
ATR1093G009 Amborella trichopoda HOM05D003721 ORTHO05D004303 1.1e-96 358.6 790 38.0
HPP92_023080 Vanilla planifolia HOM05D003721 ORTHO05D004303 7.9e-95 352.4 716 40.9
Oeu010635.1 Olea europaea HOM05D003721 ORTHO05D004303 3.0e-94 350.5 831 39.1
CDE08G1001 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 3.3e-93 347.1 746 39.7
Zm00001eb042060 Zea mays HOM05D003721 ORTHO05D004303 3.1e-91 340.5 682 39.7
PGSC0003DMG400000197 Solanum tuberosum HOM05D003721 ORTHO05D004303 1.4e-83 315.1 319 60.2
Os08g0386900 Oryza sativa ssp. japonica HOM05D003721 ORTHO05D004303 2.8e-76 290.8 332 54.5
Mapoly0053s0042 Marchantia polymorpha HOM05D003721 ORTHO05D004303 7.2e-72 276.2 742 33.8
SEGI_16602 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 6.1e-71 273.1 275 58.2
Sabra02G0146000 Salix brachista HOM05D003721 ORTHO05D004303 4.0e-70 270.4 591 37.4
BcaC08g45137 Brassica carinata HOM05D003721 ORTHO05D004303 1.2e-66 258.8 283 62.2
Pp3c12_14500 Physcomitrium patens HOM05D003721 ORTHO05D004303 1.3e-57 228.8 264 50.8
BcaC07g40658 Brassica carinata HOM05D003721 ORTHO05D004303 2.3e-57 228.0 307 56.7
Hma1.2p1_0623F.1_g191170 Hydrangea macrophylla HOM05D003721 ORTHO05D004303 2.3e-54 218.0 377 42.2
QL01p002178 Quercus lobata HOM05D003721 ORTHO05D004303 5.7e-53 213.4 302 50.0
TPR.G35781 Trifolium pratense HOM05D003721 ORTHO05D004303 7.3e-48 196.4 354 40.1
Pp3c3_18730 Physcomitrium patens HOM05D003721 ORTHO05D004303 3.6e-47 194.1 733 32.9
BcaC07g40654 Brassica carinata HOM05D003721 ORTHO05D004303 9.8e-45 186.0 417 52.3
AagrBONN_evm.TU.Sc2ySwM_369.3 Anthoceros agrestis HOM05D003721 ORTHO05D004303 2.2e-44 184.9 220 47.7
Carub.0005s2826 Capsella rubella HOM05D003721 ORTHO05D004303 1.8e-38 165.2 217 55.3
Haze_15579 Corylus avellana HOM05D003721 ORTHO05D004303 8.9e-38 162.9 190 56.8
Actinidia37722 Actinidia chinensis HOM05D003721 ORTHO05D004074 5.6e-32 143.7 407 34.2
BcaC08g45231 Brassica carinata HOM05D003721 ORTHO05D004303 3.7e-28 131.0 89 80.9
Cpa.g.sc11.56 Carica papaya HOM05D003721 ORTHO05D004303 1.9e-27 128.6 107 68.2
Haze_15574 Corylus avellana HOM05D003721 ORTHO05D004303 4.1e-27 127.5 170 51.8
SGA_v2.0_scaffold4G02274 Striga asiatica HOM05D003721 ORTHO05D004303 9.2e-27 126.3 182 50.0
Lalb_Chr04g0259331 Lupinus albus HOM05D003721 ORTHO05D004303 4.3e-24 117.5 240 42.5
arahy.Tifrunner.gnm1.ann1.LL4IHI Arachis hypogaea HOM05D003721 ORTHO05D004303 1.2e-23 115.9 105 58.1
Actinidia37723 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.9e-19 102.1 160 48.8
AL5G44110 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 7.1e-19 100.1 72 84.7
Actinidia10078 Actinidia chinensis HOM05D003721 ORTHO05D004303 3.9e-17 94.4 396 28.3
MCO16G164 Micromonas commoda HOM05D003721 ORTHO05D004303 2.8e-15 88.2 185 32.4
SHI13345 Sapria himalayana HOM05D003721 ORTHO05D004303 4.0e-14 84.3 104 44.2
CBR_g40304 Chara braunii HOM05D001539 ORTHO05D000937 5.3e-14 84.0 115 44.3
Actinidia21288 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.5e-13 82.4 67 68.7
Actinidia10079 Actinidia chinensis HOM05D003721 ORTHO05D004303 3.8e-12 77.8 86 52.3
Cre12.g495800 Chlamydomonas reinhardtii HOM05D003721 ORTHO05D004303 3.5e-10 71.2 224 30.8
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 6.0e-10 70.5 359 30.9
SEGI_39264 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 1.8e-06 58.9 389 26.7
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 9.0e-06 56.6 315 29.5


User provided reference genes

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