Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40654 Brassica carinata HOM05D003721 ORTHO05D004303 1.2e-135 486.9 310 100.0
BcaC07g40653 Brassica carinata HOM05D003721 ORTHO05D004303 5.7e-58 228.8 408 44.4
BcaC07g40669 Brassica carinata HOM05D003721 ORTHO05D004303 3.2e-48 196.4 417 52.3
C08p36410 Brassica napus HOM05D003721 ORTHO05D004303 3.2e-48 196.4 417 52.3
BolC8t51224H Brassica oleracea HOM05D003721 ORTHO05D004303 3.2e-48 196.4 417 52.3
BcaC07g40658 Brassica carinata HOM05D003721 ORTHO05D004303 1.2e-47 194.5 268 53.4
BcaC07g42682 Brassica carinata HOM05D003721 ORTHO05D004303 6.0e-47 192.2 394 51.5
BraA09t40785Z Brassica rapa HOM05D003721 ORTHO05D004303 4.7e-44 182.6 417 50.6
A09p53630 Brassica napus HOM05D003721 ORTHO05D004303 1.4e-43 181.0 417 50.1
Thhalv10005812m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 3.6e-36 156.4 423 44.9
Sp5g01840 Schrenkiella parvula HOM05D003721 ORTHO05D004303 1.2e-34 151.4 430 44.2
BcaC08g45137 Brassica carinata HOM05D003721 ORTHO05D004303 7.1e-32 142.1 236 48.3
BcaB02g07370 Brassica carinata HOM05D003721 ORTHO05D004303 1.0e-30 138.3 398 43.7
A07p25580 Brassica napus HOM05D003721 ORTHO05D004303 2.3e-30 137.1 412 47.1
C06p27570 Brassica napus HOM05D003721 ORTHO05D004303 3.0e-30 136.7 415 46.0
BolC6t37925H Brassica oleracea HOM05D003721 ORTHO05D004303 1.2e-28 131.3 425 44.7
BraA07t30199Z Brassica rapa HOM05D003721 ORTHO05D004303 2.8e-28 130.2 425 44.9
BcaC08g45136 Brassica carinata HOM05D003721 ORTHO05D004303 4.0e-27 126.3 350 36.6
AT3G61570 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 6.0e-23 112.5 409 38.6
AL5G43940 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 7.8e-23 112.1 413 37.8
AT2G46180 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 1.9e-16 90.9 416 39.7
Aa31LG1G27570 Aethionema arabicum HOM05D003721 ORTHO05D004303 2.5e-13 80.5 421 37.8
BcaC07g42673 Brassica carinata HOM05D003721 ORTHO05D004303 1.8e-11 74.3 286 35.0
AL4G45430 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 3.1e-11 73.6 421 37.5
Thhalv10001332m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 1.5e-10 71.2 424 36.8
Sp5g32820 Schrenkiella parvula HOM05D003721 ORTHO05D004303 4.5e-10 69.7 421 35.4
Duzib138G0478 Durio zibethinus HOM05D003721 ORTHO05D004303 6.4e-09 65.9 162 35.2
Carub.0004s2886 Capsella rubella HOM05D003721 ORTHO05D004303 7.1e-08 62.4 221 30.3
Nitab4.5_0003501g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 7.1e-08 62.4 201 30.3
Sopen01g039000 Solanum pennellii HOM05D003721 ORTHO05D004303 2.1e-07 60.8 428 26.9
Carub.0005s2826 Capsella rubella HOM05D003721 ORTHO05D004303 7.9e-07 58.9 161 35.4
COL.COLO4_06374 Corchorus olitorius HOM05D003721 ORTHO05D004303 7.9e-07 58.9 416 24.3
Solyc01g095210.3 Solanum lycopersicum HOM05D003721 ORTHO05D004303 1.0e-06 58.5 429 26.1
vmacro13221 Vaccinium macrocarpon HOM05D003721 ORTHO05D004303 1.8e-06 57.8 402 26.6
Lj7A506T70 Lonicera japonica HOM05D003721 ORTHO05D004303 3.0e-06 57.0 427 28.6
Prupe.2G178900 Prunus persica HOM05D003721 ORTHO05D004303 3.9e-06 56.6 195 31.3
arahy.Tifrunner.gnm1.ann1.M56506 Arachis hypogaea HOM05D003721 ORTHO05D004303 5.1e-06 56.2 42 64.3
arahy.Tifrunner.gnm1.ann1.QXLJ4L Arachis hypogaea HOM05D003721 ORTHO05D004303 5.1e-06 56.2 42 64.3
Thecc.01G351200 Theobroma cacao HOM05D003721 ORTHO05D004303 5.1e-06 56.2 368 25.0


User provided reference genes

Program Settings