Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 0.0e+00 2088.2 1045 100.0
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 0.0e+00 2027.7 1131 92.0
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 2023.8 1131 91.8
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1986.5 1131 90.4
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 0.0e+00 1985.3 1131 90.3
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 0.0e+00 1938.3 1127 87.8
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1927.5 1129 86.9
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1905.2 1129 86.3
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1903.3 1129 86.0
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 0.0e+00 1895.2 1130 85.8
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 0.0e+00 1736.5 1128 78.0
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1674.1 1110 79.0
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 0.0e+00 1651.0 1158 74.5
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 0.0e+00 1609.0 1120 72.8
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 0.0e+00 1604.3 1118 72.6
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 0.0e+00 1590.9 1121 71.5
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1590.5 1119 71.9
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 0.0e+00 1585.5 1119 72.0
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 0.0e+00 1582.8 1129 71.3
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1580.8 1120 71.5
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 0.0e+00 1579.3 1118 71.3
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1578.1 1119 71.8
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1576.2 1117 71.5
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1575.1 1118 71.4
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 0.0e+00 1570.4 1096 72.6
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1569.7 1117 71.4
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 0.0e+00 1569.3 1120 71.1
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 0.0e+00 1566.2 1118 70.6
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1564.7 1118 70.6
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 0.0e+00 1563.9 1126 71.2
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 0.0e+00 1563.5 1117 71.1
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1560.8 1131 70.4
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 0.0e+00 1560.0 1122 71.1
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1558.9 1118 70.4
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 0.0e+00 1558.1 1119 70.2
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 0.0e+00 1557.7 1118 70.8
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 0.0e+00 1556.6 1116 71.7
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1552.7 1132 70.4
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 0.0e+00 1548.9 1120 70.3
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1548.5 1120 70.4
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 0.0e+00 1548.1 1122 70.2
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 0.0e+00 1548.1 1119 70.2
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 0.0e+00 1545.0 1118 70.6
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 0.0e+00 1541.9 1125 69.6
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 0.0e+00 1540.4 1119 70.9
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 0.0e+00 1539.6 1146 68.6
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 0.0e+00 1538.9 1121 69.6
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1536.2 1121 69.5
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 0.0e+00 1535.4 1104 71.0
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 0.0e+00 1535.4 1121 69.5
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1534.6 1177 66.7
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 0.0e+00 1532.3 1122 69.9
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1530.0 1117 70.1
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1530.0 1124 69.8
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1527.7 1118 69.3
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 0.0e+00 1523.5 1122 69.3
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 0.0e+00 1522.3 1121 69.4
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1515.7 1120 69.3
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 0.0e+00 1515.7 1112 69.3
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 0.0e+00 1513.0 1116 68.8
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1511.5 1121 68.9
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 0.0e+00 1509.6 1122 68.9
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1508.0 1115 69.1
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 0.0e+00 1507.7 1118 68.6
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 0.0e+00 1505.0 1113 68.6
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 0.0e+00 1501.5 1119 68.8
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 0.0e+00 1498.8 1120 67.3
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1498.8 1078 70.8
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 0.0e+00 1498.0 1117 68.2
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 0.0e+00 1497.3 1121 68.7
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1496.5 1118 68.9
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 0.0e+00 1491.5 1119 67.6
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 0.0e+00 1491.1 1109 67.7
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 0.0e+00 1488.4 1108 67.6
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 0.0e+00 1485.3 1103 67.8
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1480.7 1067 71.1
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 0.0e+00 1472.6 1181 64.9
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1471.1 1112 67.4
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 0.0e+00 1464.5 1042 71.7
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1458.7 1160 65.9
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 0.0e+00 1455.3 868 85.4
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1452.2 1193 64.1
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 0.0e+00 1444.9 812 88.8
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1435.6 1245 62.1
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 0.0e+00 1434.5 1080 68.1
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 0.0e+00 1411.7 1128 65.2
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 0.0e+00 1404.8 1114 66.2
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 0.0e+00 1397.5 1123 64.6
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 0.0e+00 1395.2 1319 58.5
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1381.7 1148 64.2
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 0.0e+00 1371.3 1134 62.8
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 0.0e+00 1342.0 1122 61.7
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1333.2 1130 60.9
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 0.0e+00 1332.0 950 71.7
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1327.4 1134 60.7
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 0.0e+00 1295.0 1155 60.7
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1229.5 857 71.9
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 0.0e+00 1204.5 970 65.2
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1183.7 834 71.9
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1181.8 839 71.5
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 3.5e-309 1065.1 782 68.7
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 1.9e-302 1042.7 1121 53.1
CiPaw.01G064500 Carya illinoinensis HOM05D004297 ORTHO05D005213 9.9e-296 1020.4 678 75.5
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 4.3e-291 1005.0 1135 47.4
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 1.3e-274 950.3 1111 47.0
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 1.4e-262 910.2 1151 44.2
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 5.3e-257 891.7 1517 38.1
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 7.2e-246 854.7 1148 42.2
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 1.8e-233 813.5 1391 36.1
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 2.2e-231 806.6 668 60.5
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 3.6e-229 799.3 652 64.4
COL.COLO4_12744 Corchorus olitorius HOM05D004297 ORTHO05D005213 1.7e-218 763.8 528 74.6
CSS0030491 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 5.0e-215 752.3 585 68.4
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 7.8e-208 728.4 731 53.4
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 5.8e-171 605.9 566 53.5
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 6.4e-170 602.4 451 66.1
Psat0ss4650g0200 Pisum sativum HOM05D004297 ORTHO05D005213 1.3e-167 594.7 542 57.7
CDE04G3641 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 8.7e-167 592.0 433 70.9
SEGI_29424 Sequoiadendron giganteum HOM05D004297 ORTHO05D000001 6.9e-156 555.8 440 62.7
COL.COLO4_12743 Corchorus olitorius HOM05D004297 ORTHO05D005213 2.2e-133 481.1 428 59.3
Psat7g148560 Pisum sativum HOM05D004297 ORTHO05D005213 5.9e-115 419.9 296 68.6
AUR62004391 Chenopodium quinoa HOM05D004297 ORTHO05D005213 5.5e-105 386.7 371 60.6
BcaC07g42689 Brassica carinata HOM05D004297 ORTHO05D005213 9.2e-100 369.4 186 96.8
Peaxi162Scf41243g00005 Petunia axillaris HOM05D004297 ORTHO05D005213 5.8e-94 350.1 333 61.0
MCO14G315 Micromonas commoda HOM05D004297 ORTHO05D005213 1.4e-84 318.9 1106 26.6
Cre12.g506650 Chlamydomonas reinhardtii HOM05D004297 ORTHO05D005213 7.8e-75 286.6 1470 22.3
HPP92_012695 Vanilla planifolia HOM05D004297 ORTHO05D005213 1.4e-71 275.8 179 74.9
HPP92_012670 Vanilla planifolia HOM05D004297 ORTHO05D005213 3.4e-70 271.2 239 63.2
AagrBONN_evm.TU.Sc2ySwM_344.3195 Anthoceros agrestis HOM05D004297 ORTHO05D005213 2.3e-66 258.5 269 52.0
BolC6t37919H Brassica oleracea HOM05D004297 ORTHO05D005213 6.6e-66 256.9 217 71.4
PRCOL_00000293 Prasinoderma coloniale HOM05D004297 ORTHO05D005213 3.3e-65 254.6 774 27.5
MD01G1068000 Malus domestica HOM05D004297 ORTHO05D005213 1.5e-62 245.7 199 69.8
C06p27520 Brassica napus HOM05D004297 ORTHO05D005213 8.4e-61 240.0 217 67.7
Sc23g0002730 Simmondsia chinensis HOM05D004297 ORTHO05D005213 6.0e-59 233.8 195 60.0
vmacro23481 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 4.5e-54 217.6 294 44.9
CSS0029755 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 7.1e-52 210.3 539 32.8
AagrBONN_evm.TU.Sc2ySwM_344.3204 Anthoceros agrestis HOM05D004297 ORTHO05D005213 3.9e-50 204.5 313 38.0
Lsat_1_v5_gn_9_9281 Lactuca sativa HOM05D004297 ORTHO05D005213 2.5e-44 185.3 277 43.3
SEGI_39496 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 5.9e-38 164.1 224 42.4
TAR629G3312 Trochodendron aralioides HOM05D004297 ORTHO05D005213 6.5e-37 160.6 212 42.5
Ah.05g180350 Amaranthus hybridus HOM05D004297 ORTHO05D005213 6.7e-34 150.6 112 63.4
Cc02_g24300 Coffea canephora HOM05D004297 ORTHO05D005213 6.3e-32 144.1 167 50.3
AT5G28442 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 1.0e-29 136.7 74 89.2
Cfa026409 Carpinus fangiana HOM05D004297 ORTHO05D005213 7.9e-27 127.1 719 22.1
MD11G1239400 Malus domestica HOM05D004297 ORTHO05D005213 2.0e-25 122.5 80 73.8
SEGI_01640 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 2.8e-24 118.6 85 62.4
SEGI_34049 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 4.8e-24 117.9 86 69.8
Rhsim06G0126700 Rhododendron simsii HOM05D000263 ORTHO05D000213 8.2e-24 117.1 182 42.9
arahy.Tifrunner.gnm1.ann1.K3XHZI Arachis hypogaea HOM05D004297 ORTHO05D005213 1.8e-23 115.9 81 71.6
CARHR057240 Cardamine hirsuta HOM05D004297 ORTHO05D005213 1.8e-23 115.9 67 82.1
VMungo0464G0057 Vigna mungo HOM05D004297 ORTHO05D005213 2.0e-17 95.9 82 57.3
CSS0014634 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 2.2e-16 92.4 107 54.2
RcHm_v2.0_Chr1g0356921 Rosa chinensis HOM05D004297 ORTHO05D005213 1.1e-15 90.1 64 70.3
RcHm_v2.0_Chr1g0356901 Rosa chinensis HOM05D004297 ORTHO05D005213 3.1e-15 88.6 95 51.6
A07p25530 Brassica napus HOM05D004297 ORTHO05D098686 1.2e-14 86.7 92 58.7
CSS0021987 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 6.5e-13 80.9 80 56.2
Hma1.2p1_0733F.1_g210090 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 1.1e-12 80.1 60 65.0
Rhsim06G0128400 Rhododendron simsii HOM05D000263 ORTHO05D000213 3.2e-12 78.6 56 67.9
Rhsim06G0128600 Rhododendron simsii HOM05D000263 ORTHO05D000213 4.2e-12 78.2 183 35.5
Lsat_1_v5_gn_4_49241 Lactuca sativa HOM05D004297 ORTHO05D005213 5.2e-10 71.2 52 61.5
RcHm_v2.0_Chr1g0356891 Rosa chinensis HOM05D004297 ORTHO05D005213 5.7e-09 67.8 36 80.6
RcHm_v2.0_Chr1g0356911 Rosa chinensis HOM05D004297 ORTHO05D005213 5.7e-09 67.8 34 79.4
Ah.05g180910 Amaranthus hybridus HOM05D000862 ORTHO05D000943 1.3e-08 66.6 170 32.9
CSS0028965 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 2.8e-08 65.5 43 67.4
Cpa.g.sc11.39 Carica papaya HOM05D004297 ORTHO05D005213 1.4e-07 63.2 49 61.2
arahy.Tifrunner.gnm1.ann1.ABA0S6 Arachis hypogaea HOM05D004297 ORTHO05D005213 4.1e-07 61.6 46 60.9
Rhsim12G0103300 Rhododendron simsii HOM05D004297 ORTHO05D339569 7.0e-07 60.8 137 28.5
arahy.Tifrunner.gnm1.ann1.19V8U8 Arachis hypogaea HOM05D000005 ORTHO05D000012 1.6e-06 59.7 71 45.1


User provided reference genes

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