Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 9.9e-228 793.1 401 100.0
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 4.4e-220 767.7 401 97.3
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 4.4e-220 767.7 401 97.3
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 5.4e-218 760.8 398 97.0
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 1.2e-217 759.6 398 96.7
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 2.5e-207 725.3 398 94.0
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 1.1e-205 719.9 411 89.5
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 6.9e-205 717.2 411 89.5
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 2.2e-203 712.2 405 89.4
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 9.3e-202 706.8 411 88.1
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 8.7e-200 700.3 398 90.7
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 2.5e-199 698.7 405 88.4
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 3.3e-199 698.4 404 88.1
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 1.3e-198 696.4 406 87.9
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 1.4e-197 693.0 406 87.9
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 6.9e-189 664.1 405 83.0
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 1.5e-180 636.3 414 78.7
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 2.9e-171 605.5 414 75.6
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 3.6e-169 598.6 412 75.0
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 3.1e-165 585.5 412 73.8
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 2.2e-163 579.3 412 73.1
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 6.5e-163 577.8 412 73.8
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 8.5e-163 577.4 410 72.9
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 1.5e-162 576.6 410 73.2
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 9.4e-162 573.9 410 72.9
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 3.6e-161 572.0 411 72.7
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 1.8e-160 569.7 412 71.6
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 1.5e-159 566.6 411 72.5
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 5.9e-156 554.7 392 71.9
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 3.2e-154 548.9 370 74.6
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 1.6e-153 546.6 368 73.9
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 2.7e-153 545.8 375 72.5
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 4.7e-153 545.0 360 74.2
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 8.0e-153 544.3 370 74.3
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 8.0e-153 544.3 389 68.9
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 1.0e-152 543.9 368 74.2
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 1.7e-150 536.6 384 68.2
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 3.1e-149 532.3 373 71.3
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 4.1e-149 531.9 351 74.1
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 4.1e-149 531.9 396 67.4
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 1.6e-148 530.0 356 71.3
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 4.5e-148 528.5 351 71.8
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 4.5e-148 528.5 365 72.9
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 5.9e-148 528.1 413 66.1
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 1.0e-147 527.3 395 68.6
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 1.3e-147 526.9 409 65.5
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 1.3e-147 526.9 409 65.5
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 5.0e-147 525.0 351 74.1
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 6.5e-147 524.6 388 67.8
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 1.1e-146 523.9 356 71.3
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 2.5e-146 522.7 381 69.6
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 5.5e-146 521.5 351 74.4
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 5.5e-146 521.5 398 66.8
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 2.1e-145 519.6 363 71.3
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 2.1e-145 519.6 333 78.1
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 4.7e-145 518.5 361 71.7
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 8.0e-145 517.7 356 71.9
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 2.3e-144 516.2 351 74.4
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 5.2e-144 515.0 383 67.4
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 6.8e-144 514.6 384 67.4
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 6.8e-144 514.6 387 67.4
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 8.8e-144 514.2 351 73.5
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.6e-143 512.7 365 69.0
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 2.6e-143 512.7 390 67.4
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 5.7e-143 511.5 390 67.9
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 5.7e-143 511.5 355 71.3
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 7.5e-143 511.1 365 68.8
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 9.8e-143 510.8 354 73.7
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 9.8e-143 510.8 353 71.1
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 1.3e-142 510.4 352 72.2
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 3.7e-142 508.8 353 71.1
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 4.9e-142 508.4 365 68.8
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 1.4e-141 506.9 352 70.7
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 7.0e-141 504.6 352 70.7
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 7.0e-141 504.6 365 67.9
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 7.0e-141 504.6 369 70.2
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 9.2e-141 504.2 366 68.9
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 9.2e-141 504.2 391 66.5
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 1.6e-140 503.4 392 66.6
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 2.0e-140 503.1 369 66.7
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 8.6e-139 497.7 405 61.7
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 8.6e-139 497.7 392 66.3
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 1.1e-138 497.3 369 65.3
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 1.1e-138 497.3 369 66.1
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 1.9e-138 496.5 383 66.6
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 2.5e-138 496.1 353 66.6
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 4.3e-138 495.4 405 62.5
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 5.6e-138 495.0 369 65.3
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 1.2e-137 493.8 352 68.5
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 2.1e-137 493.0 370 67.6
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 6.1e-137 491.5 379 65.2
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 8.0e-137 491.1 438 58.0
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 8.0e-137 491.1 353 68.0
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 8.0e-137 491.1 329 74.5
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 1.0e-136 490.7 359 66.6
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 1.2e-135 487.3 339 72.0
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 1.5e-135 486.9 363 63.9
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 1.5e-135 486.9 346 68.8
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 2.0e-135 486.5 410 61.0
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 2.0e-135 486.5 381 65.4
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 4.4e-135 485.3 402 64.2
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 4.1e-133 478.8 371 62.5
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 4.6e-132 475.3 399 61.4
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 1.0e-131 474.2 428 56.8
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 1.7e-131 473.4 422 56.6
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 1.1e-130 470.7 283 86.2
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 7.3e-130 468.0 330 69.7
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 1.4e-128 463.8 329 69.0
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 1.2e-127 460.7 354 65.5
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 4.4e-127 458.8 381 62.5
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 3.5e-124 449.1 333 67.9
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 1.6e-116 423.7 301 68.1
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 1.7e-115 420.2 371 60.4
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 2.8e-113 412.9 358 58.9
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 4.0e-112 409.1 337 58.8
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 4.9e-110 402.1 371 57.7
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 1.7e-107 393.7 286 71.0
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 7.3e-106 388.3 364 55.8
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.6e-105 386.0 344 55.5
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 1.7e-102 377.1 360 56.1
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 8.4e-102 374.8 342 54.1
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 1.4e-101 374.0 356 56.7
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.4e-101 374.0 311 57.9
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 1.9e-98 363.6 229 83.0
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 2.8e-97 359.8 317 53.9
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 8.1e-97 358.2 278 67.3
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 3.5e-84 316.2 364 49.2
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 9.0e-80 301.6 334 50.9
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 2.1e-76 290.4 381 41.2
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 6.0e-76 288.9 321 46.1
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 2.6e-71 273.5 299 47.5
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.4e-69 267.7 344 42.4
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 3.9e-67 259.6 310 43.2
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 2.5e-66 256.9 322 43.5
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.2e-65 253.8 194 67.5
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 9.1e-64 248.4 301 41.5
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 1.1e-61 241.5 235 54.9
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 5.5e-61 239.2 297 42.8
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.2e-60 238.0 291 41.2
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 1.6e-60 237.7 202 63.4
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 2.1e-60 237.3 179 64.2
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.4e-59 234.6 305 39.0
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 8.8e-59 231.9 291 40.9
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 9.7e-58 228.4 155 74.8
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.4e-56 224.6 271 43.2
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 2.2e-54 217.2 374 36.1
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 4.1e-48 196.4 152 57.9
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.3e-43 180.6 314 34.7
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.0e-43 180.3 307 34.2
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.0e-43 180.3 167 62.9
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.5e-42 177.9 184 53.8
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.0e-42 177.6 307 35.5
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 9.7e-42 175.3 219 44.7
BcaB02g11262 Brassica carinata HOM05D003942 ORTHO05D004527 3.7e-41 173.3 113 77.9
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.1e-40 171.8 314 33.8
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 9.1e-40 168.7 138 58.7
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 5.0e-38 162.9 323 31.6
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 5.5e-37 159.5 316 30.1
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 3.7e-33 146.7 301 33.9
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.6e-31 141.4 313 26.8
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.5e-29 134.8 299 29.4
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.1e-28 131.0 294 28.9
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.2e-26 125.2 376 27.9
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.6e-26 124.0 294 29.3
Oeu020564.1 Olea europaea HOM05D003942 ORTHO05D004527 3.4e-26 123.6 77 80.5
Pp3c11_6680 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.4e-26 123.6 103 54.4
FAN10G3156 Fragaria x ananassa HOM05D000449 ORTHO05D004527 2.8e-25 120.6 105 63.8
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 7.0e-24 115.9 326 29.4
SEGI_01331 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 3.5e-23 113.6 100 57.0
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 7.8e-23 112.5 219 31.1
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.3e-21 106.7 189 33.3
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 7.3e-21 105.9 318 28.6
MCO09G357 Micromonas commoda HOM05D003942 ORTHO05D004527 1.2e-20 105.1 359 27.6
PRCOL_00004398 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.3e-19 100.9 309 28.2
MCO01G007 Micromonas commoda HOM05D003942 ORTHO05D004527 1.1e-16 92.0 307 26.4
PSO478G4509 Papaver somniferum HOM05D003942 ORTHO05D004527 5.2e-11 73.2 63 58.7
Pp3c3_14710 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.3e-09 68.6 147 32.7


User provided reference genes

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