Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40610 Brassica carinata HOM05D002688 ORTHO05D002911 1.0e-56 223.0 102 100.0
C08p35850 Brassica napus HOM05D002688 ORTHO05D002911 1.0e-56 223.0 102 100.0
BcaC07g42648 Brassica carinata HOM05D002688 ORTHO05D002911 5.9e-44 180.6 94 90.4
Thhalv10006192m.g Eutrema salsugineum HOM05D002688 ORTHO05D002911 1.6e-41 172.6 95 83.2
BcaC08g45095 Brassica carinata HOM05D002688 ORTHO05D002911 3.6e-41 171.4 95 86.3
C06p27030 Brassica napus HOM05D002688 ORTHO05D002911 3.6e-41 171.4 95 86.3
BolC6t37875H Brassica oleracea HOM05D002688 ORTHO05D002911 3.6e-41 171.4 95 86.3
A07p25270 Brassica napus HOM05D002688 ORTHO05D002911 4.7e-41 171.0 95 85.3
BraA07t30169Z Brassica rapa HOM05D002688 ORTHO05D002911 4.7e-41 171.0 95 85.3
BcaB02g07393 Brassica carinata HOM05D002688 ORTHO05D002911 1.8e-40 169.1 95 84.2
Sp5g02340 Schrenkiella parvula HOM05D002688 ORTHO05D002911 1.8e-40 169.1 95 85.3
AL5G43230 Arabidopsis lyrata HOM05D002688 ORTHO05D002911 2.0e-39 165.6 95 82.1
CARHR171300 Cardamine hirsuta HOM05D002688 ORTHO05D002911 4.4e-39 164.5 95 83.2
AT3G60910 Arabidopsis thaliana HOM05D002688 ORTHO05D002911 4.8e-38 161.0 88 85.2
Carub.0005s2766 Capsella rubella HOM05D002688 ORTHO05D002911 1.0e-35 153.3 95 75.8
PGSC0003DMG400006770 Solanum tuberosum HOM05D002688 ORTHO05D002911 8.3e-30 133.7 87 66.7
TPR.G8364 Trifolium pratense HOM05D002688 ORTHO05D002911 8.3e-30 133.7 102 62.7
Cc02_g28990 Coffea canephora HOM05D002688 ORTHO05D002911 1.1e-29 133.3 91 68.1
Aqoxy1G00319 Aquilegia oxysepala HOM05D002688 ORTHO05D002911 3.1e-29 131.7 87 63.2
Solyc01g088000.4 Solanum lycopersicum HOM05D002688 ORTHO05D002911 3.1e-29 131.7 87 64.4
THA.LOC104801972 Tarenaya hassleriana HOM05D002688 ORTHO05D002911 3.1e-29 131.7 96 63.5
CANSAT80G0975 Cannabis sativa HOM05D002688 ORTHO05D002911 7.0e-29 130.6 87 66.7
Lalb_Chr01g0000511 Lupinus albus HOM05D002688 ORTHO05D002911 7.0e-29 130.6 87 69.0
Sopen01g034900 Solanum pennellii HOM05D002688 ORTHO05D002911 9.1e-29 130.2 87 64.4
Atru.chr11.2541 Acer truncatum HOM05D002688 ORTHO05D002911 1.2e-28 129.8 87 67.8
Potri.001G261000 Populus trichocarpa HOM05D002688 ORTHO05D002911 1.2e-28 129.8 87 66.7
Cfa010823 Carpinus fangiana HOM05D002688 ORTHO05D002911 1.6e-28 129.4 87 65.5
Migut.N01803 Erythranthe guttata HOM05D002688 ORTHO05D002911 1.6e-28 129.4 93 59.1
Cpa.g.sc125.56 Carica papaya HOM05D002688 ORTHO05D002911 2.0e-28 129.0 90 64.4
COL.COLO4_12330 Corchorus olitorius HOM05D002688 ORTHO05D002911 2.0e-28 129.0 87 66.7
HanXRQChr06g0179711 Helianthus annuus HOM05D002688 ORTHO05D002911 2.7e-28 128.6 88 62.5
SalBow6G5965 Salvia bowleyana HOM05D002688 ORTHO05D002911 2.7e-28 128.6 87 63.2
Phvul.011G010500 Phaseolus vulgaris HOM05D002688 ORTHO05D002911 4.5e-28 127.9 87 65.5
Sc14g0004970 Simmondsia chinensis HOM05D002688 ORTHO05D002911 5.9e-28 127.5 87 64.4
arahy.Tifrunner.gnm1.ann1.KYFF3P Arachis hypogaea HOM05D002688 ORTHO05D002911 7.7e-28 127.1 97 59.8
arahy.Tifrunner.gnm1.ann1.UW2SL3 Arachis hypogaea HOM05D002688 ORTHO05D002911 7.7e-28 127.1 97 59.8
CDE02G4048 Ceratophyllum demersum HOM05D002688 ORTHO05D002911 7.7e-28 127.1 87 62.1
Glyma.12G010200 Glycine max HOM05D002688 ORTHO05D002911 7.7e-28 127.1 87 64.4
GSVIVG01001439001 Vitis vinifera HOM05D002688 ORTHO05D002911 7.7e-28 127.1 95 61.1
AUR62009425 Chenopodium quinoa HOM05D002688 ORTHO05D002911 1.0e-27 126.7 98 59.2
Lj3g0020648 Lotus japonicus HOM05D002688 ORTHO05D002911 1.0e-27 126.7 87 64.4
Nn7g36345 Nelumbo nucifera HOM05D002688 ORTHO05D002911 1.0e-27 126.7 98 58.2
VMungo1127G1560 Vigna mungo HOM05D002688 ORTHO05D002911 1.0e-27 126.7 87 65.5
MSTRG.5046 Avicennia marina HOM05D002688 ORTHO05D002911 1.3e-27 126.3 95 57.9
CDE08G0966 Ceratophyllum demersum HOM05D002688 ORTHO05D002911 1.3e-27 126.3 87 60.9
Gohir.A08G141400 Gossypium hirsutum HOM05D002688 ORTHO05D002911 1.3e-27 126.3 87 65.5
Gohir.D08G162500 Gossypium hirsutum HOM05D002688 ORTHO05D002911 1.3e-27 126.3 87 65.5
Gorai.004G168900 Gossypium raimondii HOM05D002688 ORTHO05D002911 1.3e-27 126.3 87 65.5
CAN.G909.16 Capsicum annuum HOM05D002688 ORTHO05D002911 1.7e-27 125.9 95 60.0
Psat7g146520 Pisum sativum HOM05D002688 ORTHO05D002911 1.7e-27 125.9 87 65.5
Duzib133G1529 Durio zibethinus HOM05D002688 ORTHO05D002911 2.3e-27 125.6 99 58.6
Nn2g15180 Nelumbo nucifera HOM05D002688 ORTHO05D002911 2.3e-27 125.6 87 63.2
Dinv07427 Davidia involucrata HOM05D002688 ORTHO05D002911 2.9e-27 125.2 87 62.1
ECA248G3893 Erigeron canadensis HOM05D002688 ORTHO05D002911 2.9e-27 125.2 95 58.9
PGR031G3541 Punica granatum HOM05D002688 ORTHO05D002911 2.9e-27 125.2 98 58.2
RcHm_v2.0_Chr1g0318181 Rosa chinensis HOM05D002688 ORTHO05D002911 2.9e-27 125.2 88 62.5
Thecc.01G404400 Theobroma cacao HOM05D002688 ORTHO05D002911 2.9e-27 125.2 87 66.7
FAN01G1665 Fragaria x ananassa HOM05D002688 ORTHO05D002911 3.8e-27 124.8 88 62.5
FAN10G3609 Fragaria x ananassa HOM05D002688 ORTHO05D002911 3.8e-27 124.8 88 62.5
HanXRQChr01g0015671 Helianthus annuus HOM05D002688 ORTHO05D002911 3.8e-27 124.8 87 64.4
Lsat_1_v5_gn_1_102320 Lactuca sativa HOM05D002688 ORTHO05D002911 3.8e-27 124.8 87 63.2
Ciclev10032531m.g Citrus clementina HOM05D002688 ORTHO05D002911 5.0e-27 124.4 96 59.4
MD07G1022400 Malus domestica HOM05D002688 ORTHO05D002911 5.0e-27 124.4 93 57.0
Manes.10G135200 Manihot esculenta HOM05D002688 ORTHO05D002911 5.0e-27 124.4 89 60.7
Oeu027367.2 Olea europaea HOM05D002688 ORTHO05D002911 5.0e-27 124.4 87 62.1
TWI73G0483 Tripterygium wilfordii HOM05D002688 ORTHO05D002911 5.0e-27 124.4 95 57.9
Manes.07G011700 Manihot esculenta HOM05D002688 ORTHO05D002911 6.5e-27 124.0 95 57.9
Peaxi162Scf01108g00331 Petunia axillaris HOM05D002688 ORTHO05D002911 8.6e-27 123.6 95 61.1
CiPaw.13G008400 Carya illinoinensis HOM05D002688 ORTHO05D002911 1.1e-26 123.2 87 62.1
Ca_26317_v3 Cicer arietinum L. HOM05D002688 ORTHO05D002911 1.1e-26 123.2 84 66.7
Nitab4.5_0011487g0010 Nicotiana tabacum HOM05D002688 ORTHO05D002911 1.9e-26 122.5 87 62.1
EL10Ac2g04381 Beta vulgaris HOM05D002688 ORTHO05D002911 2.5e-26 122.1 87 63.2
CiPaw.14G003800 Carya illinoinensis HOM05D002688 ORTHO05D002911 2.5e-26 122.1 87 62.1
CsaV3_7G030680 Cucumis sativus L. HOM05D002688 ORTHO05D002911 2.5e-26 122.1 87 59.8
MD02G1301500 Malus domestica HOM05D002688 ORTHO05D002911 2.5e-26 122.1 92 58.7
Hma1.2p1_0269F.1_g107770 Hydrangea macrophylla HOM05D002688 ORTHO05D002911 3.3e-26 121.7 87 59.8
Hma1.2p1_0685F.1_g203300 Hydrangea macrophylla HOM05D002688 ORTHO05D002911 3.3e-26 121.7 87 59.8
Rhsim07G0059300 Rhododendron simsii HOM05D002688 ORTHO05D002911 3.3e-26 121.7 96 54.2
FvH4_7g01670 Fragaria vesca HOM05D002688 ORTHO05D002911 4.2e-26 121.3 88 61.4
Glyma.09G226600 Glycine max HOM05D002688 ORTHO05D002911 5.5e-26 120.9 87 62.1
FAN03G0468 Fragaria x ananassa HOM05D002688 ORTHO05D002911 9.5e-26 120.2 88 60.2
FAN03G1555 Fragaria x ananassa HOM05D002688 ORTHO05D002911 9.5e-26 120.2 88 60.2
ATR0680G068 Amborella trichopoda HOM05D002688 ORTHO05D002911 1.6e-25 119.4 87 59.8
Actinidia23255 Actinidia chinensis HOM05D002688 ORTHO05D002911 2.1e-25 119.0 87 59.8
PSO339G1014 Papaver somniferum HOM05D002688 ORTHO05D002911 2.1e-25 119.0 91 60.4
SEGI_29949 Sequoiadendron giganteum HOM05D002688 ORTHO05D002911 2.8e-25 118.6 87 59.8
Sed0003035 Sechium edule HOM05D002688 ORTHO05D002911 3.6e-25 118.2 87 58.6
unitig_22.g5874 Utricularia gibba HOM05D002688 ORTHO05D002911 4.7e-25 117.9 87 59.8
PSO384G1250 Papaver somniferum HOM05D002688 ORTHO05D002911 1.8e-24 115.9 91 59.3
HPP92_001357 Vanilla planifolia HOM05D002688 ORTHO05D002911 4.0e-24 114.8 87 59.8
Lj7C576G5 Lonicera japonica HOM05D002688 ORTHO05D002911 8.9e-24 113.6 88 58.0
SGA_v2.0_scaffold354G49751 Striga asiatica HOM05D002688 ORTHO05D002911 3.4e-23 111.7 81 60.5
Sabra09G0040700 Salix brachista HOM05D002688 ORTHO05D002911 4.4e-23 111.3 143 42.0
FAN03G1637 Fragaria x ananassa HOM05D002688 ORTHO05D002911 9.8e-23 110.2 95 54.7
ClCG09G004460 Citrullus lanatus HOM05D002688 ORTHO05D002911 1.7e-22 109.4 106 50.9
Eucgr.G03283 Eucalyptus grandis HOM05D002688 ORTHO05D002911 1.4e-21 106.3 120 45.8
Zm00001eb329570 Zea mays HOM05D002688 ORTHO05D002911 3.1e-21 105.1 90 52.2
Os05g0392200 Oryza sativa ssp. japonica HOM05D002688 ORTHO05D002911 4.5e-20 101.3 87 51.7
Mapoly0110s0031 Marchantia polymorpha HOM05D002688 ORTHO05D002911 1.7e-19 99.4 88 46.6
Mapoly0120s0031 Marchantia polymorpha HOM05D002688 ORTHO05D002911 1.7e-19 99.4 88 46.6
MELO3C023588.2 Cucumis melo HOM05D002688 ORTHO05D002911 3.3e-18 95.1 79 54.4
Pp3c19_12220 Physcomitrium patens HOM05D002688 ORTHO05D002911 5.6e-18 94.4 94 42.6
vmacro13703 Vaccinium macrocarpon HOM05D002688 ORTHO05D002911 3.0e-16 88.6 143 33.6
Zm00001eb287290 Zea mays HOM05D002688 ORTHO05D002911 4.0e-16 88.2 87 49.4
SMO114G0028 Selaginella moellendorffii HOM05D002688 ORTHO05D002911 2.0e-15 85.9 99 43.4
SMO117G0362 Selaginella moellendorffii HOM05D002688 ORTHO05D002911 5.8e-15 84.3 87 44.8
Pp3c7_22960 Physcomitrium patens HOM05D002688 ORTHO05D002911 2.7e-12 75.5 95 37.9
Pp3c22_16090 Physcomitrium patens HOM05D002688 ORTHO05D002911 6.0e-12 74.3 77 42.9
TAR623G0984 Trochodendron aralioides HOM05D002688 ORTHO05D002911 1.1e-10 70.1 62 53.2
Medtr0003s0620 Medicago truncatula HOM05D002688 ORTHO05D002911 1.5e-10 69.7 49 65.3
Sabra16G0159600 Salix brachista HOM05D002688 ORTHO05D002911 1.5e-10 69.7 53 64.2
AUR62023104 Chenopodium quinoa HOM05D002688 ORTHO05D002911 5.6e-10 67.8 60 55.0
DCAR_031811 Daucus carota HOM05D029437 ORTHO05D029197 7.3e-10 67.4 39 69.2
Hund02960 Selenicereus undatus HOM05D002688 ORTHO05D002911 9.5e-10 67.0 54 61.1
Potri.009G055600 Populus trichocarpa HOM05D002688 ORTHO05D002911 2.1e-09 65.9 37 75.7
Ah.16g100690 Amaranthus hybridus HOM05D002688 ORTHO05D002911 3.6e-09 65.1 49 61.2
CSS0035182 Camellia sinensis var. sinensis HOM05D002688 ORTHO05D002911 4.7e-09 64.7 56 48.2
Lj9C642T3 Lonicera japonica HOM05D002688 ORTHO05D002911 3.1e-08 62.0 40 65.0
HanXRQChr13g0402711 Helianthus annuus HOM05D002688 ORTHO05D002911 8.9e-08 60.5 87 35.6
Prupe.2G023000 Prunus persica HOM05D002688 ORTHO05D002911 8.9e-08 60.5 37 64.9
Oeu049472.3 Olea europaea HOM05D002688 ORTHO05D002911 1.5e-07 59.7 37 59.5
Ah.09g235230 Amaranthus hybridus HOM05D002688 ORTHO05D002911 2.0e-07 59.3 52 51.9
ATR0796G024 Amborella trichopoda HOM05D002688 ORTHO05D002911 2.6e-07 58.9 87 31.0
Lsat_1_v5_gn_6_71361 Lactuca sativa HOM05D002688 ORTHO05D002911 2.6e-07 58.9 87 36.8
Phvul.009G242300 Phaseolus vulgaris HOM05D002688 ORTHO05D002911 4.4e-07 58.2 92 33.7
ECA233G1620 Erigeron canadensis HOM05D002688 ORTHO05D002911 9.8e-07 57.0 87 34.5
AagrBONN_evm.TU.Sc2ySwM_228.4148 Anthoceros agrestis HOM05D002688 ORTHO05D002911 1.3e-06 56.6 128 27.3
Lalb_Chr15g0083771 Lupinus albus HOM05D002688 ORTHO05D002911 1.3e-06 56.6 85 34.1
Lalb_Chr20g0114281 Lupinus albus HOM05D002688 ORTHO05D002911 2.9e-06 55.5 89 29.2
DCAR_002540 Daucus carota HOM05D002688 ORTHO05D002911 3.7e-06 55.1 87 32.2
Nitab4.5_0004222g0030 Nicotiana tabacum HOM05D002688 ORTHO05D002911 3.7e-06 55.1 37 59.5
Prupe.1G108600 Prunus persica HOM05D002688 ORTHO05D002911 6.4e-06 54.3 87 31.0


User provided reference genes

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