Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40499 Brassica carinata HOM05D007215 ORTHO05D009019 5.2e-105 384.4 196 100.0
BolC8t51070H Brassica oleracea HOM05D007215 ORTHO05D009019 5.2e-105 384.4 196 100.0
C08p34680 Brassica napus HOM05D007215 ORTHO05D009019 3.6e-98 361.7 185 100.0
A09p52000 Brassica napus HOM05D007215 ORTHO05D009019 9.8e-96 353.6 185 98.4
BraA09t40633Z Brassica rapa HOM05D007215 ORTHO05D009019 9.8e-96 353.6 185 98.9
Thhalv10006255m.g Eutrema salsugineum HOM05D007215 ORTHO05D009019 3.3e-83 312.0 198 85.4
AL5G41750 Arabidopsis lyrata HOM05D007215 ORTHO05D009019 2.9e-79 298.9 189 82.5
AT3G59680 Arabidopsis thaliana HOM05D007215 ORTHO05D009019 5.2e-73 278.1 187 79.7
CARHR170050 Cardamine hirsuta HOM05D007215 ORTHO05D009019 1.5e-72 276.6 195 79.0
Carub.0005s2640 Capsella rubella HOM05D007215 ORTHO05D009019 9.8e-72 273.9 189 79.9
Sp5g03500 Schrenkiella parvula HOM05D007215 ORTHO05D009019 1.4e-62 243.4 186 73.1
Aa31LG10G13970 Aethionema arabicum HOM05D007215 ORTHO05D009019 6.8e-57 224.6 182 73.1
THA.LOC104804037 Tarenaya hassleriana HOM05D007215 ORTHO05D009019 2.4e-49 199.5 184 64.7
ClCG06G001110 Citrullus lanatus HOM05D007215 ORTHO05D009019 3.6e-42 175.6 205 51.7
MSTRG.9732 Avicennia marina HOM05D007215 ORTHO05D009019 2.6e-40 169.5 190 55.8
VMungo0251G1340 Vigna mungo HOM05D007215 ORTHO05D009019 3.4e-40 169.1 194 56.2
QL10p055936 Quercus lobata HOM05D007215 ORTHO05D009019 7.6e-40 167.9 192 56.2
Glyma.02G137900 Glycine max HOM05D007215 ORTHO05D009019 6.4e-39 164.9 193 54.9
Sc25g0002820 Simmondsia chinensis HOM05D007215 ORTHO05D009019 8.4e-39 164.5 194 52.6
Sed0003072 Sechium edule HOM05D007215 ORTHO05D009019 1.1e-38 164.1 194 50.5
Cfa015271 Carpinus fangiana HOM05D007215 ORTHO05D009019 1.4e-38 163.7 181 56.9
Medtr4g087380 Medicago truncatula HOM05D007215 ORTHO05D009019 1.4e-38 163.7 188 54.8
EL10Ac3g06096 Beta vulgaris HOM05D007215 ORTHO05D009019 3.2e-38 162.5 196 54.1
Phvul.003G297000 Phaseolus vulgaris HOM05D007215 ORTHO05D009019 5.4e-38 161.8 190 52.6
Psat7g121080 Pisum sativum HOM05D007215 ORTHO05D009019 1.2e-37 160.6 189 52.4
Glyma.07G207400 Glycine max HOM05D007215 ORTHO05D009019 1.6e-37 160.2 191 53.9
TPR.G23547 Trifolium pratense HOM05D002328 ORTHO05D009019 1.6e-37 160.2 195 51.8
THA.LOC104816280 Tarenaya hassleriana HOM05D007215 ORTHO05D009019 4.6e-37 158.7 189 54.5
Lalb_Chr05g0218881 Lupinus albus HOM05D007215 ORTHO05D009019 1.0e-36 157.5 191 54.5
CSS0011584 Camellia sinensis var. sinensis HOM05D007215 ORTHO05D009019 1.3e-36 157.1 172 58.1
FAN17G2642 Fragaria x ananassa HOM05D007215 ORTHO05D009019 1.3e-36 157.1 200 50.5
RcHm_v2.0_Chr4g0405921 Rosa chinensis HOM05D007215 ORTHO05D009019 2.3e-36 156.4 193 51.3
HanXRQChr04g0110541 Helianthus annuus HOM05D007215 ORTHO05D009019 3.0e-36 156.0 184 55.4
Potri.019G112300 Populus trichocarpa HOM05D007215 ORTHO05D009019 6.7e-36 154.8 202 49.0
Atru.chr4.1429 Acer truncatum HOM05D007215 ORTHO05D009019 1.9e-35 153.3 204 48.5
Cc03_g14170 Coffea canephora HOM05D007215 ORTHO05D009019 1.9e-35 153.3 186 53.8
Lj6P222T10 Lonicera japonica HOM05D007215 ORTHO05D009019 4.3e-35 152.1 172 55.8
SGA_v2.0_scaffold12G06193 Striga asiatica HOM05D007215 ORTHO05D009019 4.3e-35 152.1 185 53.0
FvH4_4g10370 Fragaria vesca HOM05D007215 ORTHO05D009019 5.6e-35 151.8 200 47.5
DCAR_027521 Daucus carota HOM05D007215 ORTHO05D009019 9.6e-35 151.0 174 53.4
Gohir.A10G144100 Gossypium hirsutum HOM05D007215 ORTHO05D009019 2.1e-34 149.8 204 50.0
Peaxi162Scf00483g00061 Petunia axillaris HOM05D007215 ORTHO05D009019 2.8e-34 149.4 194 50.5
Haze_01356 Corylus avellana HOM05D007215 ORTHO05D009019 6.2e-34 148.3 142 62.7
Peaxi162Scf00180g00003 Petunia axillaris HOM05D007215 ORTHO05D009019 6.2e-34 148.3 175 55.4
Gorai.011G135400 Gossypium raimondii HOM05D007215 ORTHO05D009019 8.1e-34 147.9 206 49.0
Manes.11G128800 Manihot esculenta HOM05D007215 ORTHO05D009019 1.1e-33 147.5 175 52.0
Cpa.g.sc9.370 Carica papaya HOM05D007215 ORTHO05D009019 1.4e-33 147.1 150 56.0
Ah.07g202820 Amaranthus hybridus HOM05D007215 ORTHO05D009019 2.4e-33 146.4 181 53.0
Hma1.2p1_0150F.1_g066880 Hydrangea macrophylla HOM05D007215 ORTHO05D009019 2.4e-33 146.4 163 55.2
Prupe.1G207500 Prunus persica HOM05D007215 ORTHO05D009019 2.4e-33 146.4 212 49.1
Dinv33208 Davidia involucrata HOM05D007215 ORTHO05D009019 4.0e-33 145.6 184 51.1
Sabra19G0108300 Salix brachista HOM05D007215 ORTHO05D009019 6.9e-33 144.8 208 46.2
FAN22G1962 Fragaria x ananassa HOM05D007215 ORTHO05D009019 1.2e-32 144.1 170 53.5
MSTRG.4303 Avicennia marina HOM05D007215 ORTHO05D009019 5.8e-32 141.7 189 50.3
Lalb_Chr09g0328091 Lupinus albus HOM05D007215 ORTHO05D009019 7.6e-32 141.4 194 47.9
Lju470C16T0 Lonicera japonica HOM05D007215 ORTHO05D009019 2.2e-31 139.8 169 53.8
Oeu015716.1 Olea europaea HOM05D007215 ORTHO05D009019 2.9e-31 139.4 160 54.4
CiPaw.02G100200 Carya illinoinensis HOM05D007215 ORTHO05D009019 1.4e-30 137.1 204 46.6
Oeu016616.1 Olea europaea HOM05D007215 ORTHO05D009019 3.2e-30 136.0 177 50.3
Oeu016617.1 Olea europaea HOM05D007215 ORTHO05D009019 3.2e-30 136.0 177 50.3
MD04G1049300 Malus domestica HOM05D007215 ORTHO05D009019 2.7e-29 132.9 249 40.6
TAR362G0943 Trochodendron aralioides HOM05D007215 ORTHO05D009019 4.6e-29 132.1 180 50.0
AUR62002398 Chenopodium quinoa HOM05D007215 ORTHO05D009019 1.8e-28 130.2 172 51.7
AUR62023787 Chenopodium quinoa HOM05D007215 ORTHO05D009019 3.9e-28 129.0 172 51.7
Aqoxy2G03930 Aquilegia oxysepala HOM05D007215 ORTHO05D009019 8.7e-28 127.9 162 48.8
Ciclev10022275m.g Citrus clementina HOM05D007215 ORTHO05D009019 1.5e-27 127.1 198 44.9
Duzib151G0080 Durio zibethinus HOM05D007215 ORTHO05D009019 1.9e-27 126.7 137 56.2
Migut.G01175 Erythranthe guttata HOM05D007215 ORTHO05D009019 1.9e-27 126.7 201 44.8
Nn7g37543 Nelumbo nucifera HOM05D007215 ORTHO05D009019 1.9e-27 126.7 178 48.9
ATR0743G235 Amborella trichopoda HOM05D007215 ORTHO05D009019 2.8e-26 122.9 135 55.6
COL.COLO4_00135 Corchorus olitorius HOM05D007215 ORTHO05D009019 4.8e-26 122.1 137 56.9
Solyc06g053440.3 Solanum lycopersicum HOM05D007215 ORTHO05D009019 1.8e-25 120.2 192 46.9
Duzib268G1282 Durio zibethinus HOM05D007215 ORTHO05D009019 3.1e-25 119.4 199 42.7
HanXRQChr10g0285991 Helianthus annuus HOM05D007215 ORTHO05D009019 3.1e-25 119.4 195 42.6
MBI11_g16037_MAGBIO Magnolia biondii HOM05D007215 ORTHO05D009019 3.1e-25 119.4 179 46.9
Lsat_1_v5_gn_5_190641 Lactuca sativa HOM05D007215 ORTHO05D009019 4.0e-25 119.0 194 46.9
Thecc.04G165300 Theobroma cacao HOM05D007215 ORTHO05D009019 4.0e-25 119.0 206 42.7
Lj4g0027849 Lotus japonicus HOM05D007215 ORTHO05D009019 6.9e-25 118.2 193 45.6
CAN.G136.10 Capsicum annuum HOM05D007215 ORTHO05D009019 1.2e-24 117.5 191 47.6
Nn1g09545 Nelumbo nucifera HOM05D007215 ORTHO05D009019 1.2e-24 117.5 180 45.0
TWI38G1882 Tripterygium wilfordii HOM05D007215 ORTHO05D009019 1.5e-24 117.1 204 42.2
arahy.Tifrunner.gnm1.ann1.9WZ3F5 Arachis hypogaea HOM05D007215 ORTHO05D009019 2.6e-24 116.3 194 44.3
CsaV3_6G007050 Cucumis sativus L. HOM05D007215 ORTHO05D009019 7.6e-24 114.8 203 39.9
TAR633G2258 Trochodendron aralioides HOM05D007215 ORTHO05D009019 7.6e-24 114.8 178 46.6
CiPaw.01G170200 Carya illinoinensis HOM05D007215 ORTHO05D009019 1.3e-23 114.0 217 43.3
Eucgr.L00006 Eucalyptus grandis HOM05D007215 ORTHO05D009019 2.2e-23 113.2 194 41.2
SalBow6G6024 Salvia bowleyana HOM05D007215 ORTHO05D009019 6.5e-23 111.7 180 45.0
Oeu021574.1 Olea europaea HOM05D007215 ORTHO05D009019 2.5e-22 109.8 180 41.7
HPP92_023723 Vanilla planifolia HOM05D007215 ORTHO05D009019 3.2e-22 109.4 139 49.6
Sopen06g018520 Solanum pennellii HOM05D007215 ORTHO05D009019 7.1e-22 108.2 177 46.9
PGSC0003DMG402016333 Solanum tuberosum HOM05D007215 ORTHO05D009019 7.1e-22 108.2 179 46.9
CDE09G0824 Ceratophyllum demersum HOM05D007215 ORTHO05D009019 1.2e-21 107.5 184 40.2
Rhsim09G0009600 Rhododendron simsii HOM05D007215 ORTHO05D009019 1.6e-21 107.1 176 45.5
PSO017G6467 Papaver somniferum HOM05D007215 ORTHO05D009019 3.5e-21 105.9 223 39.0
CDE02G0746 Ceratophyllum demersum HOM05D007215 ORTHO05D009019 1.0e-20 104.4 180 41.1
ECA238G1604 Erigeron canadensis HOM05D007215 ORTHO05D009019 3.9e-20 102.4 181 43.6
TAR633G0862 Trochodendron aralioides HOM05D007215 ORTHO05D009019 1.5e-19 100.5 139 48.9
MELO3C022424.2 Cucumis melo HOM05D007215 ORTHO05D009019 3.3e-19 99.4 180 41.1
CANSAT56G1068 Cannabis sativa HOM05D007215 ORTHO05D009019 1.1e-17 94.4 223 35.9
PSO837G0056 Papaver somniferum HOM05D007215 ORTHO05D009019 1.1e-17 94.4 220 36.8
GSVIVG01038146001 Vitis vinifera HOM05D007215 ORTHO05D009019 5.3e-17 92.0 116 48.3
Lj6P211T14 Lonicera japonica HOM05D007215 ORTHO05D009019 9.0e-17 91.3 128 50.0
PGR042G0468 Punica granatum HOM05D007215 ORTHO05D009019 1.2e-16 90.9 203 40.4
MD17G1178000 Malus domestica HOM05D007215 ORTHO05D009019 7.7e-16 88.2 111 51.4
Os01g0393300 Oryza sativa ssp. japonica HOM05D007215 ORTHO05D009019 1.4e-14 84.0 203 36.0
Migut.I00402 Erythranthe guttata HOM05D007215 ORTHO05D009019 1.9e-14 83.6 108 54.6
HPP92_007596 Vanilla planifolia HOM05D007215 ORTHO05D009019 5.5e-14 82.0 150 38.7
Gohir.D10G122900 Gossypium hirsutum HOM05D007215 ORTHO05D009019 1.1e-06 57.8 121 36.4


User provided reference genes

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