Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40494 Brassica carinata HOM05D004353 ORTHO05D004989 3.1e-137 491.9 264 100.0
C08p34630 Brassica napus HOM05D004353 ORTHO05D004989 3.1e-137 491.9 264 100.0
BolC8t51065H Brassica oleracea HOM05D004353 ORTHO05D004989 3.1e-137 491.9 264 100.0
A09p51910 Brassica napus HOM05D004353 ORTHO05D004989 1.1e-121 440.3 267 91.8
BraA09t40627Z Brassica rapa HOM05D004353 ORTHO05D004989 6.9e-121 437.6 267 91.4
BcaC07g40471 Brassica carinata HOM05D004353 ORTHO05D004989 5.7e-107 391.3 272 82.0
Sp5g03540 Schrenkiella parvula HOM05D004353 ORTHO05D004989 1.3e-90 337.0 271 71.2
AL4G42450 Arabidopsis lyrata HOM05D004353 ORTHO05D004989 8.3e-74 281.2 268 60.4
Aa31LG1G25350 Aethionema arabicum HOM05D004353 ORTHO05D004989 2.7e-72 276.2 268 59.7
AT2G43630 Arabidopsis thaliana HOM05D004353 ORTHO05D004989 1.0e-71 274.2 268 59.7
Thhalv10001554m.g Eutrema salsugineum HOM05D004353 ORTHO05D004989 8.0e-69 264.6 271 57.9
CARHR138810 Cardamine hirsuta HOM05D004353 ORTHO05D004989 1.8e-68 263.5 268 59.0
Carub.0004s2616 Capsella rubella HOM05D004353 ORTHO05D004989 4.0e-68 262.3 269 57.2
Sp4g25730 Schrenkiella parvula HOM05D004353 ORTHO05D004989 6.8e-68 261.5 271 60.1
AL5G41660 Arabidopsis lyrata HOM05D004353 ORTHO05D004989 5.8e-67 258.5 234 68.8
AT3G59640 Arabidopsis thaliana HOM05D004353 ORTHO05D004989 6.4e-66 255.0 233 68.2
Carub.0005s2635 Capsella rubella HOM05D004353 ORTHO05D004989 3.1e-60 236.1 233 64.8
C04p70590 Brassica napus HOM05D004353 ORTHO05D004989 6.8e-60 235.0 266 54.1
BolC4t28561H Brassica oleracea HOM05D004353 ORTHO05D004989 2.6e-59 233.0 266 53.4
BcaC02g07160 Brassica carinata HOM05D004353 ORTHO05D004989 5.8e-59 231.9 266 53.0
A04p32910 Brassica napus HOM05D004353 ORTHO05D004989 5.8e-59 231.9 267 54.3
THA.LOC104803988 Tarenaya hassleriana HOM05D004353 ORTHO05D004989 1.4e-57 227.3 265 52.1
BraA04t18750Z Brassica rapa HOM05D004353 ORTHO05D004989 7.1e-57 224.9 274 48.2
THA.LOC104802322 Tarenaya hassleriana HOM05D004353 ORTHO05D004989 1.7e-55 220.3 269 55.4
BcaB06g29332 Brassica carinata HOM05D004353 ORTHO05D004989 6.6e-55 218.4 266 50.0
Gohir.A13G222400 Gossypium hirsutum HOM05D004353 ORTHO05D004989 1.2e-45 187.6 227 49.8
Gorai.011G261300 Gossypium raimondii HOM05D004353 ORTHO05D004989 4.7e-45 185.7 272 46.7
Gorai.013G257700 Gossypium raimondii HOM05D004353 ORTHO05D004989 6.2e-45 185.3 274 46.0
CARHR169980 Cardamine hirsuta HOM05D004353 ORTHO05D004989 8.1e-45 184.9 179 67.6
Gohir.D10G228800 Gossypium hirsutum HOM05D004353 ORTHO05D004989 1.8e-44 183.7 227 51.1
Thecc.09G282100 Theobroma cacao HOM05D004353 ORTHO05D004989 3.4e-43 179.5 227 52.0
Cpa.g.sc9.354 Carica papaya HOM05D004353 ORTHO05D004989 6.4e-42 175.3 263 44.1
Gorai.012G140500 Gossypium raimondii HOM05D004353 ORTHO05D004989 3.5e-40 169.5 204 52.5
Duzib168G0981 Durio zibethinus HOM05D004353 ORTHO05D004989 6.0e-40 168.7 223 45.3
Ciclev10021938m.g Citrus clementina HOM05D004353 ORTHO05D004989 3.0e-39 166.4 238 43.3
Gohir.D13G227200 Gossypium hirsutum HOM05D004353 ORTHO05D004989 1.3e-37 161.0 213 50.7
Potri.006G123800 Populus trichocarpa HOM05D004353 ORTHO05D004989 2.1e-37 160.2 260 42.7
FAN22G0682 Fragaria x ananassa HOM05D004353 ORTHO05D004989 1.8e-36 157.1 272 41.9
QL10p053348 Quercus lobata HOM05D004353 ORTHO05D004989 2.4e-36 156.8 192 46.4
Eucgr.A01325 Eucalyptus grandis HOM05D004353 ORTHO05D004989 5.3e-36 155.6 262 45.4
FAN17G1422 Fragaria x ananassa HOM05D004353 ORTHO05D004989 5.3e-36 155.6 273 42.5
QL10p054510 Quercus lobata HOM05D004353 ORTHO05D004989 5.3e-36 155.6 266 38.3
FAN12G3936 Fragaria x ananassa HOM05D004353 ORTHO05D004989 1.5e-35 154.1 263 43.0
FAN12G4128 Fragaria x ananassa HOM05D004353 ORTHO05D004989 1.5e-35 154.1 240 45.0
Sabra06G0098000 Salix brachista HOM05D004353 ORTHO05D004989 1.5e-35 154.1 260 41.9
FvH4_4g10550 Fragaria vesca HOM05D004353 ORTHO05D004989 2.0e-35 153.7 263 43.0
FAN07G2673 Fragaria x ananassa HOM05D004353 ORTHO05D004989 2.0e-35 153.7 273 42.5
RcHm_v2.0_Chr4g0406201 Rosa chinensis HOM05D004353 ORTHO05D004989 9.9e-35 151.4 271 41.0
MD15G1424100 Malus domestica HOM05D004353 ORTHO05D004989 1.7e-34 150.6 193 49.2
MD08G1231200 Malus domestica HOM05D004353 ORTHO05D004989 2.2e-34 150.2 279 40.5
Prupe.1G205800 Prunus persica HOM05D004353 ORTHO05D004989 2.2e-34 150.2 272 43.0
Atru.chr6.1925 Acer truncatum HOM05D004353 ORTHO05D004989 6.4e-34 148.7 231 42.4
Manes.11G130500 Manihot esculenta HOM05D004353 ORTHO05D004989 1.1e-33 147.9 190 46.3
CiPaw.02G101000 Carya illinoinensis HOM05D004353 ORTHO05D004989 2.4e-33 146.7 269 43.5
Atru.chr4.1388 Acer truncatum HOM05D004353 ORTHO05D004989 3.2e-33 146.4 228 44.7
PGR031G1729 Punica granatum HOM05D004353 ORTHO05D004989 4.2e-33 146.0 269 38.3
Cfa015265 Carpinus fangiana HOM05D004353 ORTHO05D004989 7.1e-33 145.2 264 35.2
TWI63G0567 Tripterygium wilfordii HOM05D004353 ORTHO05D004989 7.1e-33 145.2 276 38.8
Duzib150G0228 Durio zibethinus HOM05D004353 ORTHO05D004989 1.6e-32 144.1 231 44.6
Prupe.1G570000 Prunus persica HOM05D004353 ORTHO05D004989 3.5e-32 142.9 197 48.7
COL.COLO4_19851 Corchorus olitorius HOM05D004353 ORTHO05D004989 6.0e-32 142.1 222 49.5
CANSAT54G2783 Cannabis sativa HOM05D004353 ORTHO05D004989 1.0e-31 141.4 220 47.3
ClCG03G006580 Citrullus lanatus HOM05D004353 ORTHO05D004989 1.3e-31 141.0 195 50.8
TWI15G0091 Tripterygium wilfordii HOM05D004353 ORTHO05D004989 8.7e-31 138.3 263 43.0
Glyma.07G165200 Glycine max HOM05D004353 ORTHO05D004989 1.5e-30 137.5 223 43.9
Sc05g0005560 Simmondsia chinensis HOM05D004353 ORTHO05D004989 1.5e-30 137.5 188 50.0
Sed0022603 Sechium edule HOM05D004353 ORTHO05D004989 1.9e-30 137.1 227 44.5
AUR62025025 Chenopodium quinoa HOM05D004353 ORTHO05D004989 3.3e-30 136.3 187 46.5
Oeu043896.1 Olea europaea HOM05D004353 ORTHO05D004989 4.3e-30 136.0 201 39.8
Glyma.09G118100 Glycine max HOM05D004353 ORTHO05D004989 5.6e-30 135.6 268 40.3
GSVIVG01038129001 Vitis vinifera HOM05D004353 ORTHO05D004989 9.6e-30 134.8 185 50.8
PSO675G4101 Papaver somniferum HOM05D004353 ORTHO05D004989 4.8e-29 132.5 195 41.5
Hma1.2p1_0017F.1_g011670 Hydrangea macrophylla HOM05D004353 ORTHO05D004989 1.1e-28 131.3 192 41.7
RcHm_v2.0_Chr2g0115921 Rosa chinensis HOM05D004353 ORTHO05D004989 1.4e-28 131.0 238 43.3
AUR62006505 Chenopodium quinoa HOM05D004353 ORTHO05D004989 1.8e-28 130.6 187 40.6
Lj2g0015848 Lotus japonicus HOM05D004353 ORTHO05D004989 4.0e-28 129.4 273 37.7
Ah.03g147060 Amaranthus hybridus HOM05D004353 ORTHO05D004989 5.3e-28 129.0 195 48.2
MELO3C002758.2 Cucumis melo HOM05D004353 ORTHO05D004989 1.2e-27 127.9 246 43.1
CsaV3_1G036770 Cucumis sativus L. HOM05D004353 ORTHO05D004989 2.0e-27 127.1 218 42.7
VMungo1215G1727 Vigna mungo HOM05D004353 ORTHO05D004989 3.4e-27 126.3 231 42.4
PSO017G5600 Papaver somniferum HOM05D004353 ORTHO05D004989 5.8e-27 125.6 202 39.1
TAR362G0930 Trochodendron aralioides HOM05D004353 ORTHO05D004989 7.6e-27 125.2 237 44.3
MSTRG.16235 Avicennia marina HOM05D004353 ORTHO05D004989 9.9e-27 124.8 199 42.7
arahy.Tifrunner.gnm1.ann1.ZXP0UV Arachis hypogaea HOM05D004353 ORTHO05D004989 3.8e-26 122.9 262 34.4
Peaxi162Scf00008g03715 Petunia axillaris HOM05D004353 ORTHO05D004989 3.8e-26 122.9 183 45.4
Cc04_g05110 Coffea canephora HOM05D004353 ORTHO05D004989 1.9e-25 120.6 185 48.1
EL10Ac6g15412 Beta vulgaris HOM05D004353 ORTHO05D004989 2.4e-25 120.2 259 40.9
FAN19G0170 Fragaria x ananassa HOM05D004353 ORTHO05D004989 3.2e-25 119.8 244 41.8
C08p34640 Brassica napus HOM05D004353 ORTHO05D004989 5.5e-25 119.0 56 100.0
TAR633G2112 Trochodendron aralioides HOM05D004353 ORTHO05D004989 5.5e-25 119.0 184 46.7
Atru.chr6.1923 Acer truncatum HOM05D004353 ORTHO05D004989 9.3e-25 118.2 114 52.6
unitig_61.g26169 Utricularia gibba HOM05D004353 ORTHO05D004989 9.3e-25 118.2 192 42.2
Hund04296 Selenicereus undatus HOM05D004353 ORTHO05D004989 2.1e-24 117.1 188 41.5
arahy.Tifrunner.gnm1.ann1.WL5XYL Arachis hypogaea HOM05D004353 ORTHO05D004989 2.7e-24 116.7 264 33.3
Gorai.012G140700 Gossypium raimondii HOM05D004353 ORTHO05D004989 2.7e-24 116.7 101 53.5
Ca_17991_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 6.0e-24 115.5 209 41.1
Sed0011106 Sechium edule HOM05D004353 ORTHO05D004989 6.0e-24 115.5 181 48.6
Migut.M00919 Erythranthe guttata HOM05D004353 ORTHO05D004989 5.1e-23 112.5 212 36.8
CAN.G162.60 Capsicum annuum HOM05D004353 ORTHO05D004989 1.1e-22 111.3 183 40.4
Lalb_Chr02g0158251 Lupinus albus HOM05D004353 ORTHO05D004989 1.5e-22 110.9 245 42.0
Phvul.003G023800 Phaseolus vulgaris HOM05D004353 ORTHO05D004989 1.5e-22 110.9 201 41.3
Nitab4.5_0000214g0170 Nicotiana tabacum HOM05D004353 ORTHO05D004989 1.9e-22 110.5 184 41.3
FvH4_1g21910 Fragaria vesca HOM05D004353 ORTHO05D004989 4.3e-22 109.4 166 47.6
FAN28G0555 Fragaria x ananassa HOM05D004353 ORTHO05D004989 9.6e-22 108.2 228 41.7
Solyc04g054460.3 Solanum lycopersicum HOM05D004353 ORTHO05D004989 2.8e-21 106.7 189 43.4
Sopen04g024280 Solanum pennellii HOM05D004353 ORTHO05D004989 2.8e-21 106.7 189 43.4
FAN26G0137 Fragaria x ananassa HOM05D004353 ORTHO05D004989 1.4e-20 104.4 163 46.0
Gorai.013G194600 Gossypium raimondii HOM05D004353 ORTHO05D004989 2.4e-20 103.6 271 34.3
C04p04620 Brassica napus HOM05D004353 ORTHO05D004989 5.3e-20 102.4 87 58.6
Lalb_Chr22g0353411 Lupinus albus HOM05D004353 ORTHO05D004989 5.3e-20 102.4 190 40.5
MBI08_g25559_MAGBIO Magnolia biondii HOM05D004353 ORTHO05D004989 9.0e-20 101.7 174 44.8
Nitab4.5_0000518g0010 Nicotiana tabacum HOM05D004353 ORTHO05D004989 9.0e-20 101.7 184 39.7
Lalb_Chr21g0317861 Lupinus albus HOM05D004353 ORTHO05D004989 1.5e-19 100.9 212 43.9
SalBow8G1390 Salvia bowleyana HOM05D004353 ORTHO05D004989 1.5e-19 100.9 167 44.9
ATR0743G161 Amborella trichopoda HOM05D004353 ORTHO05D004989 2.6e-19 100.1 195 37.9
DCAR_005473 Daucus carota HOM05D004353 ORTHO05D004989 5.8e-19 99.0 204 39.7
Aqoxy3G00280 Aquilegia oxysepala HOM05D004353 ORTHO05D004989 7.6e-19 98.6 185 42.2
Lalb_Chr10g0096191 Lupinus albus HOM05D004353 ORTHO05D004989 1.0e-18 98.2 198 40.9
SHI23072 Sapria himalayana HOM05D004353 ORTHO05D004989 2.9e-18 96.7 165 47.3
Haze_01374 Corylus avellana HOM05D004353 ORTHO05D004989 4.9e-18 95.9 179 43.0
MSTRG.19791 Avicennia marina HOM05D004353 ORTHO05D004989 8.4e-18 95.1 107 46.7
SGA_v2.0_scaffold1G00163 Striga asiatica HOM05D004353 ORTHO05D004989 8.4e-18 95.1 190 37.9
Ca_13736_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 1.4e-17 94.4 213 40.8
BcaB02g08913 Brassica carinata HOM05D004353 ORTHO05D004989 1.9e-17 94.0 87 56.3
BolC4t22093H Brassica oleracea HOM05D004353 ORTHO05D004989 1.9e-17 94.0 87 56.3
PGSC0003DMG400005514 Solanum tuberosum HOM05D004353 ORTHO05D004989 1.9e-17 94.0 151 47.7
Medtr1g030860 Medicago truncatula HOM05D004353 ORTHO05D004989 4.2e-17 92.8 190 40.0
Ca_02292_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 5.5e-17 92.4 236 35.2
HanXRQChr10g0307981 Helianthus annuus HOM05D004353 ORTHO05D004989 5.5e-17 92.4 183 37.7
Zm00001eb246630 Zea mays HOM05D004353 ORTHO05D004989 1.6e-16 90.9 188 34.0
Os02g0606000 Oryza sativa ssp. japonica HOM05D004353 ORTHO05D004989 3.5e-16 89.7 194 32.0
Psat1g079080 Pisum sativum HOM05D004353 ORTHO05D004989 3.5e-16 89.7 213 37.6
Medtr6g012760 Medicago truncatula HOM05D004353 ORTHO05D004989 7.9e-16 88.6 259 34.0
TPR.G8801 Trifolium pratense HOM05D004353 ORTHO05D004989 1.3e-15 87.8 234 38.0
BcaC02g12375 Brassica carinata HOM05D004353 ORTHO05D004989 1.8e-15 87.4 77 55.8
ECA248G0230 Erigeron canadensis HOM05D004353 ORTHO05D004989 3.9e-15 86.3 224 38.8
Psat6g042920 Pisum sativum HOM05D004353 ORTHO05D004989 3.9e-15 86.3 187 40.6
CDE05G3235 Ceratophyllum demersum HOM05D004353 ORTHO05D004989 1.1e-14 84.7 137 47.4
TPR.G36930 Trifolium pratense HOM05D004353 ORTHO05D004989 1.1e-14 84.7 163 40.5
Medtr8g077030 Medicago truncatula HOM05D000149 ORTHO05D004989 1.5e-14 84.3 209 41.6
Lsat_1_v5_gn_5_149741 Lactuca sativa HOM05D004353 ORTHO05D004989 3.3e-14 83.2 192 31.8
Nitab4.5_0001095g0110 Nicotiana tabacum HOM05D004353 ORTHO05D004989 4.3e-14 82.8 141 43.3
CARHR170000 Cardamine hirsuta HOM05D004353 ORTHO05D004989 5.7e-14 82.4 69 59.4
Lj2g0004083 Lotus japonicus HOM05D004353 ORTHO05D004989 2.8e-13 80.1 191 40.3
Zm00001eb184150 Zea mays HOM05D004353 ORTHO05D004989 6.3e-13 79.0 225 35.1
arahy.Tifrunner.gnm1.ann1.I4T7AK Arachis hypogaea HOM05D004353 ORTHO05D004989 2.4e-12 77.0 263 32.7
Dinv40298 Davidia involucrata HOM05D004353 ORTHO05D004989 4.1e-12 76.3 109 53.2
VMungo0540G0595 Vigna mungo HOM05D004353 ORTHO05D004989 4.1e-12 76.3 203 36.9
Phvul.006G120600 Phaseolus vulgaris HOM05D004353 ORTHO05D004989 6.9e-12 75.5 204 35.3
arahy.Tifrunner.gnm1.ann1.35HMJH Arachis hypogaea HOM05D004353 ORTHO05D004989 1.2e-11 74.7 263 33.8
Atru.chr4.262 Acer truncatum HOM05D004353 ORTHO05D004989 4.5e-11 72.8 102 58.8
HPP92_005578 Vanilla planifolia HOM05D004353 ORTHO05D004989 5.9e-11 72.4 185 38.9
HPP92_005597 Vanilla planifolia HOM05D004353 ORTHO05D004989 5.9e-11 72.4 207 33.3
Os04g0493300 Oryza sativa ssp. japonica HOM05D004353 ORTHO05D004989 7.6e-11 72.0 175 38.3
AUR62039440 Chenopodium quinoa HOM05D004353 ORTHO05D004989 2.2e-10 70.5 78 44.9
Glyma.09G032300 Glycine max HOM05D004353 ORTHO05D004989 8.5e-10 68.6 195 39.0
Nn1g09685 Nelumbo nucifera HOM05D004353 ORTHO05D004989 2.5e-09 67.0 79 40.5
Glyma.15G137300 Glycine max HOM05D004353 ORTHO05D004989 1.3e-07 61.2 175 30.3


User provided reference genes

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