Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40489 Brassica carinata HOM05D005903 ORTHO05D007293 3.2e-184 648.3 330 100.0
C08p34580 Brassica napus HOM05D005903 ORTHO05D007293 3.6e-183 644.8 330 99.4
BolC8t51059H Brassica oleracea HOM05D005903 ORTHO05D007293 5.2e-182 641.0 330 98.5
BraA09t40620Z Brassica rapa HOM05D005903 ORTHO05D007293 3.5e-178 628.2 330 95.8
A09p51850 Brassica napus HOM05D005903 ORTHO05D007293 6.5e-177 624.0 330 95.2
BcaC01g01793 Brassica carinata HOM05D005903 ORTHO05D007293 7.2e-176 620.5 330 94.5
C03p71840 Brassica napus HOM05D005903 ORTHO05D007293 7.2e-176 620.5 330 94.5
BolC3t19474H Brassica oleracea HOM05D005903 ORTHO05D007293 9.4e-176 620.2 330 94.5
BraA06t25085Z Brassica rapa HOM05D005903 ORTHO05D007293 3.6e-175 618.2 331 94.9
A06p19990 Brassica napus HOM05D005903 ORTHO05D007293 2.3e-174 615.5 331 94.6
BcaB01g00896 Brassica carinata HOM05D005903 ORTHO05D007293 1.1e-171 606.7 330 92.7
Thhalv10011094m.g Eutrema salsugineum HOM05D005903 ORTHO05D007293 3.5e-170 601.7 333 91.6
Carub.0005s1376 Capsella rubella HOM05D005903 ORTHO05D007293 2.7e-167 592.0 333 89.5
AT3G47630 Arabidopsis thaliana HOM05D005903 ORTHO05D007293 3.6e-167 591.7 333 89.2
AL5G26920 Arabidopsis lyrata HOM05D005903 ORTHO05D007293 1.2e-165 586.6 333 89.2
CARHR156310 Cardamine hirsuta HOM05D005903 ORTHO05D007293 4.1e-163 578.2 333 86.8
Sp1g31680 Schrenkiella parvula HOM05D005903 ORTHO05D007293 3.3e-160 568.5 330 85.2
Aa31LG9G16250 Aethionema arabicum HOM05D005903 ORTHO05D007293 1.7e-156 556.2 333 83.2
Cpa.g.sc30.99 Carica papaya HOM05D005903 ORTHO05D007293 2.4e-139 499.2 331 74.3
Dinv07001 Davidia involucrata HOM05D005903 ORTHO05D007293 1.0e-137 493.8 325 75.1
THA.LOC104812245 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 6.6e-137 491.1 364 70.1
THA.LOC104824626 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 2.5e-136 489.2 365 69.9
QL11p012010 Quercus lobata HOM05D005903 ORTHO05D007293 1.6e-135 486.5 330 73.0
Atru.chr10.296 Acer truncatum HOM05D005903 ORTHO05D007293 1.4e-134 483.4 328 72.6
Potri.001G076200 Populus trichocarpa HOM05D005903 ORTHO05D007293 2.0e-133 479.6 330 73.0
Eucgr.A00192 Eucalyptus grandis HOM05D005903 ORTHO05D007293 3.4e-133 478.8 332 70.8
Hma1.2p1_0088F.1_g045276 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 4.9e-132 474.9 330 71.2
CiPaw.09G138500 Carya illinoinensis HOM05D005903 ORTHO05D007293 6.4e-132 474.6 326 72.1
Manes.03G070940 Manihot esculenta HOM05D005903 ORTHO05D007293 6.4e-132 474.6 330 71.2
TAR624G0428 Trochodendron aralioides HOM05D005903 ORTHO05D007293 1.1e-131 473.8 330 71.5
Thecc.02G003100 Theobroma cacao HOM05D005903 ORTHO05D007293 1.9e-131 473.0 330 71.5
GSVIVG01012154001 Vitis vinifera HOM05D005903 ORTHO05D007293 5.4e-131 471.5 330 73.0
PGR044G2521 Punica granatum HOM05D005903 ORTHO05D007293 2.1e-130 469.5 331 68.6
Nitab4.5_0010610g0030 Nicotiana tabacum HOM05D005903 ORTHO05D007293 4.6e-130 468.4 330 67.3
Nn7g38356 Nelumbo nucifera HOM05D005903 ORTHO05D007293 2.3e-129 466.1 324 71.9
EL10Ac5g11217 Beta vulgaris HOM05D005903 ORTHO05D007293 7.3e-128 461.1 330 68.2
Nitab4.5_0000844g0290 Nicotiana tabacum HOM05D005903 ORTHO05D007293 7.3e-128 461.1 330 66.1
vmacro03560 Vaccinium macrocarpon HOM05D005903 ORTHO05D007293 2.1e-127 459.5 346 66.5
FAN16G3015 Fragaria x ananassa HOM05D005903 ORTHO05D007293 3.6e-127 458.8 331 69.5
Gohir.A11G047300 Gossypium hirsutum HOM05D005903 ORTHO05D007293 1.1e-126 457.2 324 70.4
Solyc02g081840.4 Solanum lycopersicum HOM05D005903 ORTHO05D007293 1.4e-126 456.8 330 66.4
FAN11G1857 Fragaria x ananassa HOM05D005903 ORTHO05D007293 2.4e-126 456.1 331 69.5
PGSC0003DMG400007316 Solanum tuberosum HOM05D005903 ORTHO05D007293 3.1e-126 455.7 330 66.1
RcHm_v2.0_Chr5g0021241 Rosa chinensis HOM05D005903 ORTHO05D007293 4.0e-126 455.3 331 69.8
FvH4_3g13050 Fragaria vesca HOM05D005903 ORTHO05D007293 6.8e-126 454.5 331 69.2
FAN21G0687 Fragaria x ananassa HOM05D005903 ORTHO05D007293 6.8e-126 454.5 331 68.9
Gohir.D11G050900 Gossypium hirsutum HOM05D005903 ORTHO05D007293 8.9e-126 454.1 324 70.4
Dinv26323 Davidia involucrata HOM05D005903 ORTHO05D007293 1.5e-125 453.4 298 75.2
CAN.G809.52 Capsicum annuum HOM05D005903 ORTHO05D007293 2.0e-125 453.0 331 65.6
Gorai.007G055300 Gossypium raimondii HOM05D005903 ORTHO05D007293 2.6e-125 452.6 324 70.1
AUR62036920 Chenopodium quinoa HOM05D005903 ORTHO05D007293 9.9e-125 450.7 330 67.0
FAN25G2454 Fragaria x ananassa HOM05D005903 ORTHO05D007293 2.2e-124 449.5 331 68.6
CANSAT35G1866 Cannabis sativa HOM05D005903 ORTHO05D007293 3.8e-124 448.7 324 68.2
Lj4g0014401 Lotus japonicus HOM05D005903 ORTHO05D007293 1.1e-123 447.2 320 69.7
MD05G1245400 Malus domestica HOM05D005903 ORTHO05D007293 1.6e-122 443.4 332 67.5
Migut.M02015 Erythranthe guttata HOM05D005903 ORTHO05D007293 2.1e-122 443.0 330 65.5
Medtr4g094760 Medicago truncatula HOM05D005903 ORTHO05D007293 1.0e-121 440.7 324 66.0
CsaV3_6G052990 Cucumis sativus L. HOM05D005903 ORTHO05D007293 1.5e-120 436.8 332 65.4
ClCG01G025750 Citrullus lanatus HOM05D005903 ORTHO05D007293 1.9e-120 436.4 332 66.0
Lsat_1_v5_gn_1_24420 Lactuca sativa HOM05D005903 ORTHO05D007293 1.9e-120 436.4 333 67.6
Cc09_g05110 Coffea canephora HOM05D005903 ORTHO05D007293 2.5e-120 436.0 323 65.9
MELO3C007010.2 Cucumis melo HOM05D005903 ORTHO05D007293 2.5e-120 436.0 332 65.1
Migut.G01043 Erythranthe guttata HOM05D005903 ORTHO05D007293 7.3e-120 434.5 323 65.9
HanXRQChr12g0369311 Helianthus annuus HOM05D005903 ORTHO05D007293 3.6e-119 432.2 327 66.1
PSO675G2427 Papaver somniferum HOM05D005903 ORTHO05D007293 3.6e-119 432.2 326 64.1
VMungo0251G1440 Vigna mungo HOM05D005903 ORTHO05D007293 1.8e-118 429.9 320 66.6
ECA247G0018 Erigeron canadensis HOM05D005903 ORTHO05D007293 9.0e-118 427.6 329 64.4
Cc00_g27340 Coffea canephora HOM05D005903 ORTHO05D007293 1.2e-117 427.2 323 65.9
Glyma.05G134300 Glycine max HOM05D005903 ORTHO05D007293 1.2e-117 427.2 320 66.2
Glyma.08G089000 Glycine max HOM05D005903 ORTHO05D007293 2.6e-117 426.0 323 65.6
Sabra01G0053000 Salix brachista HOM05D005903 ORTHO05D007293 2.6e-117 426.0 336 67.0
Dinv01020 Davidia involucrata HOM05D005903 ORTHO05D007293 1.3e-116 423.7 322 66.8
Hund09980 Selenicereus undatus HOM05D005903 ORTHO05D007293 6.4e-116 421.4 377 57.8
Rhsim05G0003000 Rhododendron simsii HOM05D005903 ORTHO05D007293 1.4e-115 420.2 383 58.0
TPR.G23817 Trifolium pratense HOM05D005903 ORTHO05D007293 1.4e-115 420.2 322 63.0
Ca_18231_v3 Cicer arietinum L. HOM05D005903 ORTHO05D007293 1.9e-115 419.9 320 64.4
CSS0034787 Camellia sinensis var. sinensis HOM05D005903 ORTHO05D007293 2.4e-115 419.5 314 67.2
DCAR_003756 Daucus carota HOM05D005903 ORTHO05D007293 9.3e-115 417.5 368 57.1
Rhsim13G0219000 Rhododendron simsii HOM05D005903 ORTHO05D007293 7.8e-114 414.5 330 63.9
Hma1.2p1_0088F.1_g045273 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 1.3e-113 413.7 342 63.7
ATR0605G282 Amborella trichopoda HOM05D005903 ORTHO05D007293 5.1e-113 411.8 330 63.9
Hma1.2p1_1011F.1_g247520 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 5.1e-113 411.8 342 63.5
Ciclev10016117m.g Citrus clementina HOM05D005903 ORTHO05D007293 2.5e-112 409.5 292 69.5
Duzib052G0373 Durio zibethinus HOM05D005903 ORTHO05D007293 2.5e-112 409.5 352 62.5
Sed0025041 Sechium edule HOM05D005903 ORTHO05D007293 3.3e-112 409.1 331 63.1
TWI63G1157 Tripterygium wilfordii HOM05D005903 ORTHO05D007293 2.4e-110 402.9 332 61.7
Aqoxy7G00859 Aquilegia oxysepala HOM05D005903 ORTHO05D007293 6.9e-110 401.4 330 62.1
arahy.Tifrunner.gnm1.ann1.7A7AL1 Arachis hypogaea HOM05D005903 ORTHO05D007293 5.1e-105 385.2 330 58.8
PSO675G2002 Papaver somniferum HOM05D005903 ORTHO05D007293 1.2e-101 374.0 326 57.7
Haze_05254 Corylus avellana HOM05D005903 ORTHO05D007293 1.5e-101 373.6 326 62.0
Lj1C1150G3 Lonicera japonica HOM05D005903 ORTHO05D007293 2.2e-100 369.8 295 64.4
Rhsim07G0106900 Rhododendron simsii HOM05D005903 ORTHO05D007293 1.9e-99 366.7 330 59.1
SGA_v2.0_scaffold31G12765 Striga asiatica HOM05D005903 ORTHO05D007293 3.0e-97 359.4 327 57.5
HPP92_021274 Vanilla planifolia HOM05D005903 ORTHO05D007293 3.0e-97 359.4 323 57.3
Psat7g087640 Pisum sativum HOM05D005903 ORTHO05D007293 1.5e-96 357.1 250 68.4
Prupe.7G025500 Prunus persica HOM05D005903 ORTHO05D007293 1.9e-96 356.7 223 76.7
AUR62032162 Chenopodium quinoa HOM05D005903 ORTHO05D007293 3.7e-95 352.4 276 64.5
SEGI_28167 Sequoiadendron giganteum HOM05D005903 ORTHO05D007293 6.9e-94 348.2 329 53.2
Sopen02g026460 Solanum pennellii HOM05D005903 ORTHO05D007293 5.0e-92 342.0 255 67.1
Phvul.002G188100 Phaseolus vulgaris HOM05D005903 ORTHO05D007293 4.2e-91 339.0 263 65.8
Prupe.4G118500 Prunus persica HOM05D005903 ORTHO05D007293 1.2e-90 337.4 244 70.9
Peaxi162Scf00036g02217 Petunia axillaris HOM05D005903 ORTHO05D007293 2.3e-89 333.2 294 56.8
CDE06G1059 Ceratophyllum demersum HOM05D005903 ORTHO05D007293 6.7e-89 331.6 330 54.5
COL.COLO4_05791 Corchorus olitorius HOM05D005903 ORTHO05D007293 5.9e-85 318.5 193 77.7
arahy.Tifrunner.gnm1.ann1.STP4KF Arachis hypogaea HOM05D005903 ORTHO05D007293 3.3e-80 302.8 331 49.5
Os11g0549650 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 3.1e-78 296.2 210 65.2
Zm00001eb201720 Zea mays HOM05D005903 ORTHO05D007293 2.6e-77 293.1 224 63.8
Lalb_Chr07g0188231 Lupinus albus HOM05D005903 ORTHO05D007293 1.7e-76 290.4 183 72.1
AagrBONN_evm.TU.Sc2ySwM_344.2832 Anthoceros agrestis HOM05D005903 ORTHO05D007293 6.1e-74 282.0 332 47.3
SMO367G0859 Selaginella moellendorffii HOM05D005903 ORTHO05D007293 2.3e-73 280.0 336 44.9
Pp3c7_4190 Physcomitrium patens HOM05D005903 ORTHO05D007293 7.0e-70 268.5 336 43.5
Oeu056062.1 Olea europaea HOM05D005903 ORTHO05D007293 4.5e-69 265.8 165 72.1
Mapoly0019s0171 Marchantia polymorpha HOM05D005903 ORTHO05D007293 5.9e-69 265.4 331 45.0
Gohir.D11G050975 Gossypium hirsutum HOM05D005903 ORTHO05D007293 7.2e-59 231.9 170 68.2
unitig_46.g18341 Utricularia gibba HOM05D005903 ORTHO05D007293 3.6e-58 229.6 330 43.3
Sc04g0004120 Simmondsia chinensis HOM05D005903 ORTHO05D007293 3.7e-55 219.5 123 74.0
Os11g0549690 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 3.1e-54 216.5 151 62.9
Sc04g0004130 Simmondsia chinensis HOM05D005903 ORTHO05D007293 2.9e-44 183.3 166 60.2
Cfa024540 Carpinus fangiana HOM05D005903 ORTHO05D007293 8.9e-41 171.8 315 34.6
CARHR106840 Cardamine hirsuta HOM05D005903 ORTHO05D007293 3.7e-39 166.4 120 75.8
Haze_05249 Corylus avellana HOM05D005903 ORTHO05D007293 5.4e-38 162.5 197 53.3
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 2.0e-37 160.6 343 32.1
MCO11G061 Micromonas commoda HOM05D005903 ORTHO05D007293 5.9e-37 159.1 358 30.2
Cre10.g436900 Chlamydomonas reinhardtii HOM05D005903 ORTHO05D007293 5.0e-36 156.0 320 32.8
Migut.O00470 Erythranthe guttata HOM05D005903 ORTHO05D007293 2.3e-33 147.1 144 55.6
Lalb_Chr07g0188221 Lupinus albus HOM05D005903 ORTHO05D007293 2.6e-32 143.7 153 52.9
PRCOL_00001260 Prasinoderma coloniale HOM05D005903 ORTHO05D007293 1.4e-30 137.9 350 30.3
Glyma.08G193350 Glycine max HOM05D005903 ORTHO05D007293 2.1e-18 97.4 60 76.7
COL.COLO4_05792 Corchorus olitorius HOM05D005903 ORTHO05D007293 5.2e-17 92.8 71 63.4
Os05g0295700 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 5.8e-16 89.4 73 54.8
CAN.G508.15 Capsicum annuum HOM05D005903 ORTHO05D007293 1.3e-15 88.2 242 26.9
SHI32711 Sapria himalayana HOM05D005903 ORTHO05D007293 1.2e-10 71.6 67 46.3
Oeu056063.2 Olea europaea HOM05D007234 ORTHO05D008488 1.6e-10 71.2 61 59.0
CBR_g8146 Chara braunii HOM05D005903 ORTHO05D000048 5.2e-09 66.2 66 47.0
Cfa001138 Carpinus fangiana HOM05D000398 ORTHO05D000551 2.9e-07 60.5 58 56.9
SHI32710 Sapria himalayana HOM05D005903 ORTHO05D007293 5.4e-06 56.2 85 45.9


User provided reference genes

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