Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40479 Brassica carinata HOM05D006244 ORTHO05D007401 2.9e-171 605.1 307 100.0
BcaNung05942 Brassica carinata HOM05D006244 ORTHO05D007401 3.0e-152 542.0 274 100.0
BcaC07g40478 Brassica carinata HOM05D006244 ORTHO05D007401 1.2e-151 540.0 287 96.2
C08p34500 Brassica napus HOM05D006244 ORTHO05D007401 2.4e-141 505.8 289 90.0
BolC8t51051H Brassica oleracea HOM05D006244 ORTHO05D007401 2.4e-141 505.8 289 90.0
A09p51770 Brassica napus HOM05D006244 ORTHO05D007401 8.6e-139 497.3 289 88.9
Sp5g03670 Schrenkiella parvula HOM05D006244 ORTHO05D007401 4.3e-138 495.0 293 87.7
BraA04t15944Z Brassica rapa HOM05D006244 ORTHO05D007401 1.8e-136 489.6 289 87.2
A04p02170 Brassica napus HOM05D006244 ORTHO05D007401 4.4e-135 485.0 289 85.5
BcaB02g08221 Brassica carinata HOM05D006244 ORTHO05D007401 5.7e-135 484.6 287 85.7
Thhalv10006132m.g Eutrema salsugineum HOM05D006244 ORTHO05D007401 7.5e-135 484.2 293 86.7
BraA09t40612Z Brassica rapa HOM05D006244 ORTHO05D007401 9.2e-133 477.2 282 85.8
AL5G41400 Arabidopsis lyrata HOM05D006244 ORTHO05D007401 1.7e-131 473.0 292 84.6
AT3G59490 Arabidopsis thaliana HOM05D006244 ORTHO05D007401 3.0e-131 472.2 293 83.6
Carub.0005s2622 Capsella rubella HOM05D006244 ORTHO05D007401 3.0e-131 472.2 293 84.0
CARHR169870 Cardamine hirsuta HOM05D006244 ORTHO05D007401 2.5e-130 469.2 293 82.9
Aa31LG10G13810 Aethionema arabicum HOM05D006244 ORTHO05D007401 2.1e-116 422.9 294 76.2
BolC4t24903H Brassica oleracea HOM05D006244 ORTHO05D007401 2.3e-115 419.5 289 77.2
THA.LOC104803749 Tarenaya hassleriana HOM05D006244 ORTHO05D007401 4.0e-112 408.7 301 70.1
C04p33420 Brassica napus HOM05D006244 ORTHO05D007401 1.3e-99 367.1 289 71.6
Cpa.g.sc9.298 Carica papaya HOM05D006244 ORTHO05D007401 9.6e-98 360.9 306 63.4
QL10p050150 Quercus lobata HOM05D006244 ORTHO05D007401 4.0e-96 355.5 304 61.5
QL05p011148 Quercus lobata HOM05D006244 ORTHO05D007401 9.0e-96 354.4 304 61.5
TAR636G2962 Trochodendron aralioides HOM05D006244 ORTHO05D007401 4.9e-94 348.6 305 59.3
Actinidia11297 Actinidia chinensis HOM05D006244 ORTHO05D007401 1.6e-92 343.6 299 61.5
Cfa020094 Carpinus fangiana HOM05D006244 ORTHO05D007401 6.0e-92 341.7 305 60.3
Dinv22748 Davidia involucrata HOM05D006244 ORTHO05D007401 1.3e-91 340.5 293 61.8
Atru.chr4.1240 Acer truncatum HOM05D006244 ORTHO05D007401 1.7e-91 340.1 293 61.1
COL.COLO4_12977 Corchorus olitorius HOM05D006244 ORTHO05D007401 3.0e-91 339.3 328 57.0
Potri.017G028900 Populus trichocarpa HOM05D006244 ORTHO05D007401 1.5e-90 337.0 300 58.7
Hma1.2p1_0324F.1_g125510 Hydrangea macrophylla HOM05D006244 ORTHO05D007401 4.3e-90 335.5 288 62.2
Duzib175G0007 Durio zibethinus HOM05D006244 ORTHO05D007401 1.6e-89 333.6 305 59.7
Manes.04G043800 Manihot esculenta HOM05D006244 ORTHO05D007401 2.8e-89 332.8 306 58.2
Gorai.011G141500 Gossypium raimondii HOM05D006244 ORTHO05D007401 3.6e-89 332.4 305 59.0
Gohir.D10G128300 Gossypium hirsutum HOM05D006244 ORTHO05D007401 1.8e-88 330.1 305 58.7
Hund03170 Selenicereus undatus HOM05D006244 ORTHO05D007401 3.1e-88 329.3 305 57.0
Duzib151G0743 Durio zibethinus HOM05D006244 ORTHO05D007401 4.0e-88 328.9 305 59.0
Ciclev10021382m.g Citrus clementina HOM05D006244 ORTHO05D007401 6.9e-88 328.2 299 58.2
CiPaw.02G053900 Carya illinoinensis HOM05D006244 ORTHO05D007401 9.0e-88 327.8 305 59.0
Gohir.A10G138500 Gossypium hirsutum HOM05D006244 ORTHO05D007401 1.2e-87 327.4 304 58.6
CSS0032343 Camellia sinensis var. sinensis HOM05D006244 ORTHO05D007401 3.4e-87 325.9 305 56.1
FAN07G2433 Fragaria x ananassa HOM05D006244 ORTHO05D007401 5.8e-87 325.1 312 56.7
FvH4_4g10850 Fragaria vesca HOM05D006244 ORTHO05D007401 9.9e-87 324.3 307 57.0
FAN12G2117 Fragaria x ananassa HOM05D006244 ORTHO05D007401 9.9e-87 324.3 307 57.0
GSVIVG01010791001 Vitis vinifera HOM05D006244 ORTHO05D007401 1.7e-86 323.6 295 56.9
PSO732G0675 Papaver somniferum HOM05D006244 ORTHO05D007401 2.9e-86 322.8 299 55.9
Sabra17G0017500 Salix brachista HOM05D006244 ORTHO05D007401 6.4e-86 321.6 300 57.3
MELO3C009823.2 Cucumis melo HOM05D006244 ORTHO05D007401 1.1e-85 320.9 303 58.4
Sc19g0002910 Simmondsia chinensis HOM05D006244 ORTHO05D007401 1.1e-85 320.9 305 53.1
Thecc.04G177000 Theobroma cacao HOM05D006244 ORTHO05D007401 1.4e-85 320.5 300 57.3
HanXRQChr11g0343701 Helianthus annuus HOM05D006244 ORTHO05D007401 3.2e-85 319.3 293 57.7
ECA248G0275 Erigeron canadensis HOM05D006244 ORTHO05D007401 4.2e-85 318.9 300 56.7
PSO675G8539 Papaver somniferum HOM05D006244 ORTHO05D007401 4.2e-85 318.9 312 54.2
RcHm_v2.0_Chr4g0406631 Rosa chinensis HOM05D006244 ORTHO05D007401 7.1e-85 318.2 304 55.9
CsaV3_3G040880 Cucumis sativus L. HOM05D006244 ORTHO05D007401 1.2e-84 317.4 303 57.1
Eucgr.H00368 Eucalyptus grandis HOM05D006244 ORTHO05D007401 2.1e-84 316.6 317 54.6
CANSAT78G1025 Cannabis sativa HOM05D006244 ORTHO05D007401 2.7e-84 316.2 305 55.4
Nitab4.5_0008822g0040 Nicotiana tabacum HOM05D006244 ORTHO05D007401 3.5e-84 315.8 304 56.6
Aqoxy2G04144 Aquilegia oxysepala HOM05D006244 ORTHO05D007401 1.3e-83 313.9 295 55.6
EL10Ac3g05981 Beta vulgaris HOM05D006244 ORTHO05D007401 1.3e-83 313.9 302 56.0
Lalb_Chr22g0352091 Lupinus albus HOM05D006244 ORTHO05D007401 3.9e-83 312.4 299 56.2
Lsat_1_v5_gn_1_77900 Lactuca sativa HOM05D006244 ORTHO05D007401 1.1e-82 310.8 288 56.9
Prupe.1G196900 Prunus persica HOM05D006244 ORTHO05D007401 1.5e-82 310.5 308 56.2
ClCG10G015550 Citrullus lanatus HOM05D006244 ORTHO05D007401 1.9e-82 310.1 305 56.1
AUR62023861 Chenopodium quinoa HOM05D006244 ORTHO05D007401 2.5e-82 309.7 297 56.9
Nitab4.5_0004117g0020 Nicotiana tabacum HOM05D006244 ORTHO05D007401 2.5e-82 309.7 304 55.9
Rhsim09G0025200 Rhododendron simsii HOM05D006244 ORTHO05D007401 4.8e-81 305.4 362 47.2
Psat5g289400 Pisum sativum HOM05D006244 ORTHO05D007401 6.2e-81 305.1 293 55.3
Peaxi162Scf00126g00623 Petunia axillaris HOM05D006244 ORTHO05D007401 1.1e-80 304.3 315 52.7
Sopen11g020640 Solanum pennellii HOM05D006244 ORTHO05D007401 4.0e-80 302.4 306 53.9
MD04G1042500 Malus domestica HOM05D006244 ORTHO05D007401 5.3e-80 302.0 305 54.1
Lj3g0008901 Lotus japonicus HOM05D006244 ORTHO05D007401 6.9e-80 301.6 303 54.8
PGR142G0422 Punica granatum HOM05D006244 ORTHO05D007401 1.2e-79 300.8 301 55.5
Solyc11g045210.2 Solanum lycopersicum HOM05D006244 ORTHO05D007401 2.0e-79 300.1 306 53.9
Medtr2g098960 Medicago truncatula HOM05D006244 ORTHO05D007401 2.6e-79 299.7 297 53.9
SalBow3G2237 Salvia bowleyana HOM05D006244 ORTHO05D007401 3.4e-79 299.3 300 53.0
Ah.07g202200 Amaranthus hybridus HOM05D006244 ORTHO05D007401 4.5e-79 298.9 296 52.7
PGSC0003DMG400022864 Solanum tuberosum HOM05D006244 ORTHO05D007401 5.8e-79 298.5 307 53.1
TPR.G18836 Trifolium pratense HOM05D006244 ORTHO05D007401 1.3e-78 297.4 293 53.9
MSTRG.9759 Avicennia marina HOM05D006244 ORTHO05D007401 1.7e-78 297.0 301 52.8
Glyma.15G029700 Glycine max HOM05D006244 ORTHO05D007401 1.7e-78 297.0 304 53.6
unitig_0.g2404 Utricularia gibba HOM05D006244 ORTHO05D007401 1.7e-78 297.0 293 51.9
TWI38G0370 Tripterygium wilfordii HOM05D006244 ORTHO05D007401 2.2e-78 296.6 307 51.5
arahy.Tifrunner.gnm1.ann1.LPC3IP Arachis hypogaea HOM05D006244 ORTHO05D007401 2.5e-77 293.1 310 52.6
CAN.G31.8 Capsicum annuum HOM05D006244 ORTHO05D007401 2.5e-77 293.1 314 52.5
Cc07_g21300 Coffea canephora HOM05D006244 ORTHO05D007401 6.0e-76 288.5 301 52.8
MBI08_g33169_MAGBIO Magnolia biondii HOM05D006244 ORTHO05D007401 6.0e-76 288.5 312 53.5
Migut.G01000 Erythranthe guttata HOM05D006244 ORTHO05D007401 1.0e-75 287.7 290 51.7
AUR62002326 Chenopodium quinoa HOM05D006244 ORTHO05D007401 6.7e-75 285.0 302 52.6
arahy.Tifrunner.gnm1.ann1.IE55HN Arachis hypogaea HOM05D006244 ORTHO05D007401 1.2e-71 274.2 300 50.7
HPP92_001264 Vanilla planifolia HOM05D006244 ORTHO05D007401 2.2e-70 270.0 307 47.6
HPP92_001248 Vanilla planifolia HOM05D006244 ORTHO05D007401 3.8e-70 269.2 307 47.6
ATR0743G009 Amborella trichopoda HOM05D006244 ORTHO05D007401 7.2e-69 265.0 292 48.6
Nn3g18564 Nelumbo nucifera HOM05D006244 ORTHO05D007401 2.1e-68 263.5 306 48.4
VMungo1080G0762 Vigna mungo HOM05D006244 ORTHO05D007401 4.6e-60 235.7 261 51.0
C04p32460 Brassica napus HOM05D006244 ORTHO05D007401 1.0e-59 234.6 192 66.1
Actinidia27645 Actinidia chinensis HOM05D006244 ORTHO05D007401 3.9e-59 232.6 207 61.4
Sed0026513 Sechium edule HOM05D006244 ORTHO05D007401 2.4e-56 223.4 235 54.5
DCAR_028445 Daucus carota HOM05D006244 ORTHO05D007401 2.0e-55 220.3 262 45.4
Phvul.005G153400 Phaseolus vulgaris HOM05D006244 ORTHO05D007401 2.9e-54 216.5 302 43.7
Lju337A6T20 Lonicera japonica HOM05D006244 ORTHO05D007401 4.4e-50 202.6 264 46.6
FAN17G1708 Fragaria x ananassa HOM05D006244 ORTHO05D007401 1.7e-49 200.7 207 53.6
vmacro00644 Vaccinium macrocarpon HOM05D006244 ORTHO05D007401 6.3e-49 198.7 200 53.0
Zm00001eb318410 Zea mays HOM05D006244 ORTHO05D007401 4.8e-41 172.6 249 40.6
MBI08_g09972_MAGBIO Magnolia biondii HOM05D006244 ORTHO05D007401 9.1e-40 168.3 199 49.2
Cfa015178 Carpinus fangiana HOM05D006244 ORTHO05D007401 7.7e-39 165.2 170 57.6
BcaC02g10138 Brassica carinata HOM05D006244 ORTHO05D007401 1.1e-32 144.8 241 43.6
vmacro00645 Vaccinium macrocarpon HOM05D006244 ORTHO05D007401 1.8e-32 144.1 105 66.7
Psat5g289440 Pisum sativum HOM05D006244 ORTHO05D007401 5.7e-26 122.5 118 54.2
Pp3c9_3600 Physcomitrium patens HOM05D006244 ORTHO05D007401 6.3e-25 119.0 305 28.5
SMO364G0376 Selaginella moellendorffii HOM05D006244 ORTHO05D007401 2.5e-21 107.1 265 30.2
Sabra17G0062000 Salix brachista HOM05D006244 ORTHO05D007401 2.1e-20 104.0 120 51.7
Os09g0515300 Oryza sativa ssp. japonica HOM05D006244 ORTHO05D007401 3.6e-20 103.2 125 44.8
Lj6A77G23 Lonicera japonica HOM05D006244 ORTHO05D007401 8.0e-20 102.1 94 57.4
Peaxi162Scf00533g00611 Petunia axillaris HOM05D006244 ORTHO05D007401 5.2e-19 99.4 132 47.7
Peaxi162Scf01193g00009 Petunia axillaris HOM05D006244 ORTHO05D007401 5.2e-19 99.4 132 45.5
Peaxi162Scf00066g02019 Petunia axillaris HOM05D006244 ORTHO05D007401 7.5e-18 95.5 132 43.9
Lj6C77T3 Lonicera japonica HOM05D006244 ORTHO05D007401 1.7e-17 94.4 75 62.7
Lju337A6G22 Lonicera japonica HOM05D006244 ORTHO05D007401 2.9e-17 93.6 72 61.1
Peaxi162Scf00272g00041 Petunia axillaris HOM05D006244 ORTHO05D007401 1.6e-15 87.8 120 43.3
Peaxi162Scf00627g00001 Petunia axillaris HOM05D006244 ORTHO05D007401 3.9e-14 83.2 120 41.7
Zm00001eb239190 Zea mays HOM05D001072 ORTHO05D007401 3.9e-14 83.2 65 52.3
Peaxi162Scf00404g00815 Petunia axillaris HOM05D006244 ORTHO05D007401 1.9e-13 80.9 135 41.5
Glyma.13G344600 Glycine max HOM05D006244 ORTHO05D007401 7.3e-13 79.0 58 62.1
AagrBONN_evm.TU.Sc2ySwM_228.3866 Anthoceros agrestis HOM05D006244 ORTHO05D007401 5.4e-08 62.8 125 35.2


User provided reference genes

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