Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40478 Brassica carinata HOM05D006244 ORTHO05D007401 6.3e-160 567.4 286 100.0
BcaC07g40479 Brassica carinata HOM05D006244 ORTHO05D007401 6.3e-152 540.8 287 96.2
BcaNung05942 Brassica carinata HOM05D006244 ORTHO05D007401 1.7e-144 516.2 274 96.0
C08p34500 Brassica napus HOM05D006244 ORTHO05D007401 8.3e-136 487.3 289 87.2
BolC8t51051H Brassica oleracea HOM05D006244 ORTHO05D007401 8.3e-136 487.3 289 87.2
A09p51770 Brassica napus HOM05D006244 ORTHO05D007401 7.7e-134 480.7 289 85.8
Sp5g03670 Schrenkiella parvula HOM05D006244 ORTHO05D007401 2.2e-133 479.2 293 84.6
BraA09t40612Z Brassica rapa HOM05D006244 ORTHO05D007401 3.8e-133 478.4 281 86.1
BraA04t15944Z Brassica rapa HOM05D006244 ORTHO05D007401 2.7e-131 472.2 289 83.7
A04p02170 Brassica napus HOM05D006244 ORTHO05D007401 8.8e-130 467.2 289 82.4
BcaB02g08221 Brassica carinata HOM05D006244 ORTHO05D007401 1.2e-129 466.8 287 82.2
Thhalv10006132m.g Eutrema salsugineum HOM05D006244 ORTHO05D007401 7.5e-129 464.2 293 83.3
Carub.0005s2622 Capsella rubella HOM05D006244 ORTHO05D007401 1.2e-126 456.8 293 80.9
AT3G59490 Arabidopsis thaliana HOM05D006244 ORTHO05D007401 1.6e-126 456.4 293 80.5
AL5G41400 Arabidopsis lyrata HOM05D006244 ORTHO05D007401 1.3e-125 453.4 292 80.8
CARHR169870 Cardamine hirsuta HOM05D006244 ORTHO05D007401 6.6e-125 451.1 293 79.9
Aa31LG10G13810 Aethionema arabicum HOM05D006244 ORTHO05D007401 8.3e-112 407.5 294 73.5
BolC4t24903H Brassica oleracea HOM05D006244 ORTHO05D007401 1.2e-110 403.7 289 74.0
THA.LOC104803749 Tarenaya hassleriana HOM05D006244 ORTHO05D007401 8.1e-107 391.0 301 68.1
C04p33420 Brassica napus HOM05D006244 ORTHO05D007401 9.2e-95 350.9 289 68.5
Cpa.g.sc9.298 Carica papaya HOM05D006244 ORTHO05D007401 2.7e-94 349.4 306 61.8
QL10p050150 Quercus lobata HOM05D006244 ORTHO05D007401 2.5e-92 342.8 304 59.2
QL05p011148 Quercus lobata HOM05D006244 ORTHO05D007401 5.6e-92 341.7 304 59.2
TAR636G2962 Trochodendron aralioides HOM05D006244 ORTHO05D007401 1.1e-90 337.4 305 58.0
COL.COLO4_12977 Corchorus olitorius HOM05D006244 ORTHO05D007401 2.4e-90 336.3 328 57.3
Actinidia11297 Actinidia chinensis HOM05D006244 ORTHO05D007401 3.1e-90 335.9 299 59.9
Atru.chr4.1240 Acer truncatum HOM05D006244 ORTHO05D007401 1.2e-89 334.0 293 59.7
Cfa020094 Carpinus fangiana HOM05D006244 ORTHO05D007401 2.9e-88 329.3 305 58.0
Dinv22748 Davidia involucrata HOM05D006244 ORTHO05D007401 4.9e-88 328.6 293 59.7
Potri.017G028900 Populus trichocarpa HOM05D006244 ORTHO05D007401 6.4e-88 328.2 300 57.0
Duzib175G0007 Durio zibethinus HOM05D006244 ORTHO05D007401 1.9e-87 326.6 305 58.4
Hma1.2p1_0324F.1_g125510 Hydrangea macrophylla HOM05D006244 ORTHO05D007401 7.1e-87 324.7 287 59.9
Gorai.011G141500 Gossypium raimondii HOM05D006244 ORTHO05D007401 3.5e-86 322.4 305 57.4
Duzib151G0743 Durio zibethinus HOM05D006244 ORTHO05D007401 4.6e-86 322.0 305 57.7
Manes.04G043800 Manihot esculenta HOM05D006244 ORTHO05D007401 4.6e-86 322.0 306 56.2
Gohir.D10G128300 Gossypium hirsutum HOM05D006244 ORTHO05D007401 1.7e-85 320.1 305 57.0
Thecc.04G177000 Theobroma cacao HOM05D006244 ORTHO05D007401 2.3e-85 319.7 299 57.2
Hund03170 Selenicereus undatus HOM05D006244 ORTHO05D007401 3.9e-85 318.9 305 55.1
PSO732G0675 Papaver somniferum HOM05D006244 ORTHO05D007401 6.6e-85 318.2 299 54.8
Ciclev10021382m.g Citrus clementina HOM05D006244 ORTHO05D007401 1.1e-84 317.4 299 56.9
Gohir.A10G138500 Gossypium hirsutum HOM05D006244 ORTHO05D007401 1.1e-84 317.4 304 56.9
CSS0032343 Camellia sinensis var. sinensis HOM05D006244 ORTHO05D007401 2.5e-84 316.2 305 54.1
CiPaw.02G053900 Carya illinoinensis HOM05D006244 ORTHO05D007401 9.6e-84 314.3 305 56.7
PSO675G8539 Papaver somniferum HOM05D006244 ORTHO05D007401 1.3e-83 313.9 312 53.2
FAN07G2433 Fragaria x ananassa HOM05D006244 ORTHO05D007401 2.8e-83 312.8 309 54.4
GSVIVG01010791001 Vitis vinifera HOM05D006244 ORTHO05D007401 4.8e-83 312.0 295 54.9
Eucgr.H00368 Eucalyptus grandis HOM05D006244 ORTHO05D007401 1.4e-82 310.5 308 54.5
Sabra17G0017500 Salix brachista HOM05D006244 ORTHO05D007401 1.4e-82 310.5 300 55.3
FvH4_4g10850 Fragaria vesca HOM05D006244 ORTHO05D007401 1.8e-82 310.1 311 54.3
FAN12G2117 Fragaria x ananassa HOM05D006244 ORTHO05D007401 1.8e-82 310.1 311 54.3
MELO3C009823.2 Cucumis melo HOM05D006244 ORTHO05D007401 2.4e-82 309.7 303 56.4
HanXRQChr11g0343701 Helianthus annuus HOM05D006244 ORTHO05D007401 5.3e-82 308.5 293 55.6
ECA248G0275 Erigeron canadensis HOM05D006244 ORTHO05D007401 1.5e-81 307.0 300 54.7
Aqoxy2G04144 Aquilegia oxysepala HOM05D006244 ORTHO05D007401 2.0e-81 306.6 295 54.2
CsaV3_3G040880 Cucumis sativus L. HOM05D006244 ORTHO05D007401 2.6e-81 306.2 303 55.1
Sc19g0002910 Simmondsia chinensis HOM05D006244 ORTHO05D007401 2.6e-81 306.2 305 51.8
EL10Ac3g05981 Beta vulgaris HOM05D006244 ORTHO05D007401 3.4e-81 305.8 302 54.6
RcHm_v2.0_Chr4g0406631 Rosa chinensis HOM05D006244 ORTHO05D007401 4.4e-81 305.4 309 53.4
CANSAT78G1025 Cannabis sativa HOM05D006244 ORTHO05D007401 7.6e-81 304.7 305 53.4
Nitab4.5_0008822g0040 Nicotiana tabacum HOM05D006244 ORTHO05D007401 7.6e-81 304.7 304 54.9
Lalb_Chr22g0352091 Lupinus albus HOM05D006244 ORTHO05D007401 6.4e-80 301.6 299 54.5
AUR62023861 Chenopodium quinoa HOM05D006244 ORTHO05D007401 8.4e-80 301.2 297 55.6
Nitab4.5_0004117g0020 Nicotiana tabacum HOM05D006244 ORTHO05D007401 1.4e-79 300.4 304 54.6
PGR142G0422 Punica granatum HOM05D006244 ORTHO05D007401 1.4e-79 300.4 300 55.0
ClCG10G015550 Citrullus lanatus HOM05D006244 ORTHO05D007401 2.4e-79 299.7 305 54.1
Peaxi162Scf00126g00623 Petunia axillaris HOM05D006244 ORTHO05D007401 9.3e-79 297.7 302 53.6
Lsat_1_v5_gn_1_77900 Lactuca sativa HOM05D006244 ORTHO05D007401 1.6e-78 297.0 288 54.5
Prupe.1G196900 Prunus persica HOM05D006244 ORTHO05D007401 1.6e-78 297.0 313 53.7
MD04G1042500 Malus domestica HOM05D006244 ORTHO05D007401 2.7e-78 296.2 305 53.1
Psat5g289400 Pisum sativum HOM05D006244 ORTHO05D007401 6.0e-78 295.0 293 53.6
Rhsim09G0025200 Rhododendron simsii HOM05D006244 ORTHO05D007401 6.0e-78 295.0 364 45.9
Sopen11g020640 Solanum pennellii HOM05D006244 ORTHO05D007401 3.9e-77 292.4 306 52.6
Lj3g0008901 Lotus japonicus HOM05D006244 ORTHO05D007401 6.6e-77 291.6 303 53.5
SalBow3G2237 Salvia bowleyana HOM05D006244 ORTHO05D007401 1.9e-76 290.0 300 52.0
Solyc11g045210.2 Solanum lycopersicum HOM05D006244 ORTHO05D007401 1.9e-76 290.0 306 52.6
MSTRG.9759 Avicennia marina HOM05D006244 ORTHO05D007401 3.3e-76 289.3 301 51.8
unitig_0.g2404 Utricularia gibba HOM05D006244 ORTHO05D007401 4.3e-76 288.9 293 50.2
PGSC0003DMG400022864 Solanum tuberosum HOM05D006244 ORTHO05D007401 5.6e-76 288.5 307 51.8
Medtr2g098960 Medicago truncatula HOM05D006244 ORTHO05D007401 7.4e-76 288.1 297 51.9
Ah.07g202200 Amaranthus hybridus HOM05D006244 ORTHO05D007401 1.3e-75 287.3 296 51.0
Glyma.15G029700 Glycine max HOM05D006244 ORTHO05D007401 1.6e-75 287.0 304 52.3
TWI38G0370 Tripterygium wilfordii HOM05D006244 ORTHO05D007401 1.6e-75 287.0 307 50.5
TPR.G18836 Trifolium pratense HOM05D006244 ORTHO05D007401 2.1e-75 286.6 293 52.2
arahy.Tifrunner.gnm1.ann1.LPC3IP Arachis hypogaea HOM05D006244 ORTHO05D007401 2.4e-74 283.1 310 51.3
CAN.G31.8 Capsicum annuum HOM05D006244 ORTHO05D007401 1.2e-73 280.8 307 52.1
AUR62002326 Chenopodium quinoa HOM05D006244 ORTHO05D007401 1.2e-73 280.8 302 51.3
Migut.G01000 Erythranthe guttata HOM05D006244 ORTHO05D007401 1.2e-73 280.8 290 50.7
Cc07_g21300 Coffea canephora HOM05D006244 ORTHO05D007401 1.5e-73 280.4 301 51.5
MBI08_g33169_MAGBIO Magnolia biondii HOM05D006244 ORTHO05D007401 1.3e-72 277.3 312 51.6
arahy.Tifrunner.gnm1.ann1.IE55HN Arachis hypogaea HOM05D006244 ORTHO05D007401 8.7e-69 264.6 300 49.3
HPP92_001264 Vanilla planifolia HOM05D006244 ORTHO05D007401 2.8e-67 259.6 307 46.3
HPP92_001248 Vanilla planifolia HOM05D006244 ORTHO05D007401 4.8e-67 258.8 307 46.3
Nn3g18564 Nelumbo nucifera HOM05D006244 ORTHO05D007401 6.9e-66 255.0 301 47.5
ATR0743G009 Amborella trichopoda HOM05D006244 ORTHO05D007401 1.2e-65 254.2 292 46.6
Actinidia27645 Actinidia chinensis HOM05D006244 ORTHO05D007401 5.7e-60 235.3 211 60.2
C04p32460 Brassica napus HOM05D006244 ORTHO05D007401 3.7e-59 232.6 192 66.7
VMungo1080G0762 Vigna mungo HOM05D006244 ORTHO05D007401 4.5e-57 225.7 261 49.4
Sed0026513 Sechium edule HOM05D006244 ORTHO05D007401 1.0e-56 224.6 238 53.8
DCAR_028445 Daucus carota HOM05D006244 ORTHO05D007401 7.2e-55 218.4 231 48.1
Phvul.005G153400 Phaseolus vulgaris HOM05D006244 ORTHO05D007401 1.5e-52 210.7 301 42.5
FAN17G1708 Fragaria x ananassa HOM05D006244 ORTHO05D007401 1.2e-49 201.1 199 53.3
Lju337A6T20 Lonicera japonica HOM05D006244 ORTHO05D007401 3.4e-49 199.5 264 45.5
vmacro00644 Vaccinium macrocarpon HOM05D006244 ORTHO05D007401 4.5e-49 199.1 200 52.5
Zm00001eb318410 Zea mays HOM05D006244 ORTHO05D007401 3.4e-41 172.9 233 42.5
MBI08_g09972_MAGBIO Magnolia biondii HOM05D006244 ORTHO05D007401 2.9e-40 169.9 193 49.7
Cfa015178 Carpinus fangiana HOM05D006244 ORTHO05D007401 1.4e-37 161.0 157 58.0
vmacro00645 Vaccinium macrocarpon HOM05D006244 ORTHO05D007401 3.0e-29 133.3 105 61.9
BcaC02g10138 Brassica carinata HOM05D006244 ORTHO05D007401 8.8e-29 131.7 242 40.9
Psat5g289440 Pisum sativum HOM05D006244 ORTHO05D007401 4.1e-26 122.9 118 54.2
Pp3c9_3600 Physcomitrium patens HOM05D006244 ORTHO05D007401 1.0e-24 118.2 305 28.2
SMO364G0376 Selaginella moellendorffii HOM05D006244 ORTHO05D007401 6.8e-21 105.5 264 29.5
Os09g0515300 Oryza sativa ssp. japonica HOM05D006244 ORTHO05D007401 2.6e-20 103.6 125 44.8
Sabra17G0062000 Salix brachista HOM05D006244 ORTHO05D007401 2.6e-20 103.6 120 50.8
Lj6A77G23 Lonicera japonica HOM05D006244 ORTHO05D007401 7.5e-20 102.1 94 56.4
Peaxi162Scf00533g00611 Petunia axillaris HOM05D006244 ORTHO05D007401 6.3e-19 99.0 132 47.0
Peaxi162Scf01193g00009 Petunia axillaris HOM05D006244 ORTHO05D007401 6.3e-19 99.0 132 44.7
Peaxi162Scf00066g02019 Petunia axillaris HOM05D006244 ORTHO05D007401 9.1e-18 95.1 132 43.2
Lj6C77T3 Lonicera japonica HOM05D006244 ORTHO05D007401 1.2e-17 94.7 75 62.7
Lju337A6G22 Lonicera japonica HOM05D006244 ORTHO05D007401 2.0e-17 94.0 72 61.1
Peaxi162Scf00272g00041 Petunia axillaris HOM05D006244 ORTHO05D007401 1.9e-15 87.4 120 42.5
Zm00001eb239190 Zea mays HOM05D001072 ORTHO05D007401 3.6e-14 83.2 65 52.3
Peaxi162Scf00627g00001 Petunia axillaris HOM05D006244 ORTHO05D007401 4.7e-14 82.8 120 40.8
Peaxi162Scf00404g00815 Petunia axillaris HOM05D006244 ORTHO05D007401 2.3e-13 80.5 135 40.7
Glyma.13G344600 Glycine max HOM05D006244 ORTHO05D007401 1.7e-11 74.3 54 61.1
AagrBONN_evm.TU.Sc2ySwM_228.3866 Anthoceros agrestis HOM05D006244 ORTHO05D007401 7.3e-07 58.9 127 33.9


User provided reference genes

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