Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40468 Brassica carinata HOM05D000455 ORTHO05D094607 4.4e-43 177.6 90 100.0
BcaB02g07456 Brassica carinata HOM05D000455 ORTHO05D000434 2.7e-24 115.2 80 77.5
AL5G41510 Arabidopsis lyrata HOM05D000455 ORTHO05D000434 6.2e-21 104.0 89 65.2
AT3G59580 Arabidopsis thaliana HOM05D000455 ORTHO05D000434 8.9e-20 100.1 89 62.9
Carub.0005s2630 Capsella rubella HOM05D000455 ORTHO05D000434 2.0e-19 99.0 82 65.9
CARHR169970 Cardamine hirsuta HOM05D000455 ORTHO05D000434 6.4e-18 94.0 89 61.8
Sp5g03570 Schrenkiella parvula HOM05D000455 ORTHO05D000434 6.4e-18 94.0 77 71.4
Thhalv10005779m.g Eutrema salsugineum HOM05D000455 ORTHO05D000434 9.2e-17 90.1 82 65.9
BolC6t37791H Brassica oleracea HOM05D000455 ORTHO05D000434 4.6e-16 87.8 80 62.5
BraA07t30116Z Brassica rapa HOM05D000455 ORTHO05D000434 1.3e-15 86.3 80 61.2
BcaC08g44996 Brassica carinata HOM05D000455 ORTHO05D000434 5.6e-14 80.9 54 77.8
Aa31LG1G25240 Aethionema arabicum HOM05D000455 ORTHO05D000434 8.1e-13 77.0 80 60.0
AT2G43500 Arabidopsis thaliana HOM05D000455 ORTHO05D000434 1.1e-12 76.6 80 57.5
Carub.0004s2596 Capsella rubella HOM05D000455 ORTHO05D000434 1.4e-12 76.3 82 57.3
Thhalv10001299m.g Eutrema salsugineum HOM05D000455 ORTHO05D000434 9.0e-12 73.6 79 58.2
CARHR138590 Cardamine hirsuta HOM05D000455 ORTHO05D000434 1.2e-11 73.2 75 61.3
AL4G42260 Arabidopsis lyrata HOM05D000455 ORTHO05D000434 2.6e-11 72.0 80 56.2
C03p28940 Brassica napus HOM05D000455 ORTHO05D000434 7.6e-11 70.5 80 55.0
BolC3t15250H Brassica oleracea HOM05D000455 ORTHO05D000434 7.6e-11 70.5 80 55.0
Sp4g25590 Schrenkiella parvula HOM05D000455 ORTHO05D000434 1.7e-10 69.3 77 57.1
BcaC02g07174 Brassica carinata HOM05D000455 ORTHO05D000434 1.4e-09 66.2 88 48.9
A03p24280 Brassica napus HOM05D000455 ORTHO05D000434 1.9e-09 65.9 80 51.2
BraA03t11636Z Brassica rapa HOM05D000455 ORTHO05D000434 1.9e-09 65.9 80 51.2
BcaB01g03379 Brassica carinata HOM05D000455 ORTHO05D000434 4.2e-09 64.7 71 56.3
A04p32750 Brassica napus HOM05D000455 ORTHO05D000434 7.1e-09 63.9 88 48.9
BraA04t18739Z Brassica rapa HOM05D000455 ORTHO05D000434 7.1e-09 63.9 88 48.9
BcaB02g08935 Brassica carinata HOM05D000455 ORTHO05D000434 1.6e-08 62.8 80 48.8
BcaC02g07173 Brassica carinata HOM05D000455 ORTHO05D000434 1.6e-08 62.8 88 48.9
THA.LOC104803900 Tarenaya hassleriana HOM05D000455 ORTHO05D000434 1.6e-08 62.8 81 51.9
BcaC02g12387 Brassica carinata HOM05D000455 ORTHO05D000434 2.1e-08 62.4 79 53.2
BolC4t28550H Brassica oleracea HOM05D000455 ORTHO05D000434 2.7e-08 62.0 68 55.9
TWI15G0421 Tripterygium wilfordii HOM05D000455 ORTHO05D000434 3.5e-08 61.6 87 42.5
C04p04510 Brassica napus HOM05D000455 ORTHO05D000434 6.0e-08 60.8 79 51.9
BolC4t22084H Brassica oleracea HOM05D000455 ORTHO05D000434 6.0e-08 60.8 79 51.9
A05p03810 Brassica napus HOM05D000455 ORTHO05D000434 1.0e-07 60.1 79 53.2
Atru.chr4.1337_Atru.chr4.1338 Acer truncatum HOM05D000455 ORTHO05D000434 1.3e-07 59.7 89 43.8
C04p70460 Brassica napus HOM05D000455 ORTHO05D000434 1.3e-07 59.7 88 45.5
BraA05t19369Z Brassica rapa HOM05D000455 ORTHO05D000434 3.0e-07 58.5 79 53.2
Cc03_g12520 Coffea canephora HOM05D000455 ORTHO05D000434 3.9e-07 58.2 77 49.4
Eucgr.A00040 Eucalyptus grandis HOM05D000455 ORTHO05D000434 5.1e-07 57.8 83 47.0
Sabra07G0108400 Salix brachista HOM05D000455 ORTHO05D000434 8.7e-07 57.0 93 41.9
Sabra07G0120700 Salix brachista HOM05D000455 ORTHO05D000434 8.7e-07 57.0 93 41.9
Dinv44164 Davidia involucrata HOM05D000455 ORTHO05D000434 1.1e-06 56.6 81 48.1
Prupe.1G200100 Prunus persica HOM05D000455 ORTHO05D000434 1.9e-06 55.8 89 42.7
Ah.03g136870 Amaranthus hybridus HOM05D000455 ORTHO05D000434 2.5e-06 55.5 84 42.9
Sopen11g020820 Solanum pennellii HOM05D000455 ORTHO05D000434 2.5e-06 55.5 79 41.8
Potri.007G133400 Populus trichocarpa HOM05D000455 ORTHO05D000434 3.3e-06 55.1 93 41.9
Ca_01240_v3 Cicer arietinum L. HOM05D000455 ORTHO05D000434 5.6e-06 54.3 89 42.7
Nitab4.5_0007583g0010 Nicotiana tabacum HOM05D000455 ORTHO05D000434 5.6e-06 54.3 79 44.3
Ciclev10018669m.g Citrus clementina HOM05D000455 ORTHO05D000434 7.3e-06 53.9 89 41.6
Peaxi162Scf00126g00813 Petunia axillaris HOM05D000455 ORTHO05D000434 7.3e-06 53.9 79 46.8
TWI38G0278 Tripterygium wilfordii HOM05D000455 ORTHO05D000434 7.3e-06 53.9 87 37.9
Manes.11G127000 Manihot esculenta HOM05D000455 ORTHO05D000434 9.6e-06 53.5 89 38.2
Nitab4.5_0001481g0020 Nicotiana tabacum HOM05D000455 ORTHO05D000434 9.6e-06 53.5 79 41.8
Nitab4.5_0002421g0020 Nicotiana tabacum HOM05D000455 ORTHO05D000434 9.6e-06 53.5 79 41.8


User provided reference genes

Program Settings