Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40454 Brassica carinata HOM05D004131 ORTHO05D004778 4.4e-45 184.9 144 100.0
BcaB02g08209 Brassica carinata HOM05D004131 ORTHO05D004778 5.1e-33 144.8 152 81.6
Sp5g03340 Schrenkiella parvula HOM05D004131 ORTHO05D004778 1.1e-32 143.7 157 77.7
Thhalv10006256m.g Eutrema salsugineum HOM05D004131 ORTHO05D004778 4.3e-32 141.7 157 79.6
C04p32910 Brassica napus HOM05D004131 ORTHO05D004778 1.2e-31 140.2 155 80.6
A04p02020 Brassica napus HOM05D004131 ORTHO05D004778 1.6e-31 139.8 155 80.6
AT3G59800 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 6.2e-31 137.9 157 77.1
AL5G41850 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 1.8e-30 136.3 157 76.4
BraA04t15927Z Brassica rapa HOM05D004131 ORTHO05D004778 6.8e-30 134.4 172 70.9
Aa31LG10G14050 Aethionema arabicum HOM05D004131 ORTHO05D004778 8.9e-30 134.0 166 74.7
BcaC02g10087 Brassica carinata HOM05D004131 ORTHO05D004778 8.9e-30 134.0 162 71.6
Carub.0004s2633 Capsella rubella HOM05D004131 ORTHO05D004778 1.9e-27 126.3 171 72.5
BolC4t24854H Brassica oleracea HOM05D004131 ORTHO05D004778 5.4e-27 124.8 78 83.3
CARHR170140 Cardamine hirsuta HOM05D004131 ORTHO05D004778 9.2e-27 124.0 149 75.8
Sp4g25870 Schrenkiella parvula HOM05D004131 ORTHO05D004778 1.2e-26 123.6 172 66.9
C08p34760 Brassica napus HOM05D004131 ORTHO05D004778 2.7e-26 122.5 144 53.5
BolC4t22105H Brassica oleracea HOM05D004131 ORTHO05D004778 2.7e-26 122.5 80 80.0
BcaB02g08900 Brassica carinata HOM05D004131 ORTHO05D004778 1.7e-25 119.8 77 80.5
BcaC02g12362 Brassica carinata HOM05D004131 ORTHO05D004778 1.7e-25 119.8 77 80.5
C04p04750 Brassica napus HOM05D004131 ORTHO05D004778 1.7e-25 119.8 77 80.5
CARHR138980 Cardamine hirsuta HOM05D004131 ORTHO05D004778 2.3e-25 119.4 77 83.1
AT2G43795 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 3.9e-25 118.6 80 77.5
BolC8t51078H Brassica oleracea HOM05D004131 ORTHO05D004778 6.6e-25 117.9 140 52.9
AL4G42670 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 8.7e-25 117.5 80 76.2
THA.LOC104804159 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 1.1e-24 117.1 162 73.5
A05p04000 Brassica napus HOM05D004131 ORTHO05D004778 4.3e-24 115.2 78 79.5
BraA05t19388Z Brassica rapa HOM05D004131 ORTHO05D004778 4.3e-24 115.2 78 79.5
THA.LOC104802336 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 4.3e-24 115.2 162 72.2
THA.LOC104805841 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 4.3e-24 115.2 77 76.6
VMungo0251G3663 Vigna mungo HOM05D004131 ORTHO05D004778 3.6e-23 112.1 84 70.2
Ca_18622_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 2.4e-22 109.4 81 69.1
Ca_18628_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 2.4e-22 109.4 81 69.1
TWI38G2196 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 2.4e-22 109.4 81 67.9
Migut.N03052 Erythranthe guttata HOM05D004131 ORTHO05D004778 3.1e-22 109.0 160 67.5
Medtr4g087630 Medicago truncatula HOM05D004131 ORTHO05D004778 3.1e-22 109.0 77 72.7
Actinidia18408 Actinidia chinensis HOM05D004131 ORTHO05D004778 5.2e-22 108.2 82 69.5
Duzib268G1863 Durio zibethinus HOM05D004131 ORTHO05D004778 5.2e-22 108.2 87 66.7
MD02G1003900 Malus domestica HOM05D004131 ORTHO05D004778 5.2e-22 108.2 171 64.3
CSS0004184 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 6.9e-22 107.8 81 66.7
CSS0028329 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 6.9e-22 107.8 81 66.7
Lalb_Chr16g0384341 Lupinus albus HOM05D004131 ORTHO05D004778 6.9e-22 107.8 168 59.5
Nitab4.5_0000064g0030 Nicotiana tabacum HOM05D004131 ORTHO05D004778 6.9e-22 107.8 75 72.0
Nitab4.5_0005089g0010 Nicotiana tabacum HOM05D004131 ORTHO05D004778 6.9e-22 107.8 75 72.0
Phvul.003G059400 Phaseolus vulgaris HOM05D004131 ORTHO05D004778 6.9e-22 107.8 77 72.7
Glyma.07G206100 Glycine max HOM05D004131 ORTHO05D004778 9.0e-22 107.5 81 69.1
Manes.01G017500 Manihot esculenta HOM05D004131 ORTHO05D004778 9.0e-22 107.5 170 66.5
Nn7g37517 Nelumbo nucifera HOM05D004131 ORTHO05D004778 9.0e-22 107.5 86 67.4
Psat7g119160 Pisum sativum HOM05D004131 ORTHO05D004778 9.0e-22 107.5 77 71.4
TPR.G23549 Trifolium pratense HOM05D004131 ORTHO05D004778 9.0e-22 107.5 77 71.4
TWI63G0908 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 9.0e-22 107.5 81 67.9
Atru.chr4.1513 Acer truncatum HOM05D004131 ORTHO05D004778 1.2e-21 107.1 86 66.3
Haze_11173 Corylus avellana HOM05D004131 ORTHO05D004778 1.2e-21 107.1 85 65.9
Haze_11178 Corylus avellana HOM05D004131 ORTHO05D004778 1.2e-21 107.1 85 65.9
Prupe.7G267400 Prunus persica HOM05D004131 ORTHO05D004778 1.2e-21 107.1 81 67.9
Migut.G00833 Erythranthe guttata HOM05D004131 ORTHO05D004778 1.5e-21 106.7 171 61.4
Lj4g0014155 Lotus japonicus HOM05D004131 ORTHO05D004778 2.0e-21 106.3 81 65.4
PSO675G2278 Papaver somniferum HOM05D004131 ORTHO05D004778 2.0e-21 106.3 81 67.9
ECA130G0002 Erigeron canadensis HOM05D004131 ORTHO05D004778 2.6e-21 105.9 86 65.1
Glyma.02G138900 Glycine max HOM05D004131 ORTHO05D004778 2.6e-21 105.9 81 66.7
Gohir.A10G146200 Gossypium hirsutum HOM05D004131 ORTHO05D004778 2.6e-21 105.9 81 66.7
Gorai.011G132700 Gossypium raimondii HOM05D004131 ORTHO05D004778 2.6e-21 105.9 81 66.7
Sabra07G0117600 Salix brachista HOM05D004131 ORTHO05D004778 2.6e-21 105.9 169 63.3
TAR636G2398 Trochodendron aralioides HOM05D004131 ORTHO05D004778 2.6e-21 105.9 170 49.4
Ciclev10022332m.g Citrus clementina HOM05D004131 ORTHO05D004778 3.4e-21 105.5 86 65.1
Duzib212G0438 Durio zibethinus HOM05D004131 ORTHO05D004778 3.4e-21 105.5 81 66.7
FvH4_1g00470 Fragaria vesca HOM05D004131 ORTHO05D004778 3.4e-21 105.5 81 66.7
FAN28G1052 Fragaria x ananassa HOM05D004131 ORTHO05D004778 3.4e-21 105.5 81 66.7
Lju470A13T20 Lonicera japonica HOM05D004131 ORTHO05D004778 3.4e-21 105.5 83 67.5
MBI07_g36705_MAGBIO Magnolia biondii HOM05D004131 ORTHO05D004778 3.4e-21 105.5 79 69.6
Potri.007G139900 Populus trichocarpa HOM05D004131 ORTHO05D004778 3.4e-21 105.5 81 66.7
PGSC0003DMG400005367 Solanum tuberosum HOM05D004131 ORTHO05D004778 3.4e-21 105.5 75 72.0
GSVIVG01038193001 Vitis vinifera HOM05D004131 ORTHO05D004778 3.4e-21 105.5 81 67.9
Ah.07g202990 Amaranthus hybridus HOM05D004131 ORTHO05D004778 4.4e-21 105.1 81 66.7
Dinv33225 Davidia involucrata HOM05D004131 ORTHO05D004778 4.4e-21 105.1 168 65.5
MD15G1147200 Malus domestica HOM05D004131 ORTHO05D004778 4.4e-21 105.1 76 71.1
PSO017G4173 Papaver somniferum HOM05D004131 ORTHO05D004778 4.4e-21 105.1 76 71.1
Peaxi162Scf00483g00111 Petunia axillaris HOM05D004131 ORTHO05D004778 4.4e-21 105.1 73 72.6
RcHm_v2.0_Chr2g0084981 Rosa chinensis HOM05D004131 ORTHO05D004778 4.4e-21 105.1 76 71.1
Sed0002263 Sechium edule HOM05D004131 ORTHO05D004778 4.4e-21 105.1 80 68.8
Solyc12g019470.2 Solanum lycopersicum HOM05D004131 ORTHO05D004778 4.4e-21 105.1 79 72.2
Sopen12g009750 Solanum pennellii HOM05D004131 ORTHO05D004778 4.4e-21 105.1 79 72.2
unitig_8.g3637 Utricularia gibba HOM05D004131 ORTHO05D004778 4.4e-21 105.1 81 66.7
Dinv18309 Davidia involucrata HOM05D004131 ORTHO05D004778 5.8e-21 104.8 81 64.2
ECA233G3286 Erigeron canadensis HOM05D004131 ORTHO05D004778 5.8e-21 104.8 75 70.7
FAN23G0024 Fragaria x ananassa HOM05D004131 ORTHO05D004778 5.8e-21 104.8 76 69.7
FAN26G1335 Fragaria x ananassa HOM05D004131 ORTHO05D004778 5.8e-21 104.8 76 69.7
Gohir.D10G120800 Gossypium hirsutum HOM05D004131 ORTHO05D004778 5.8e-21 104.8 81 65.4
TAR362G1052 Trochodendron aralioides HOM05D004131 ORTHO05D004778 7.6e-21 104.4 81 66.7
Ah.13g073340 Amaranthus hybridus HOM05D004131 ORTHO05D004778 9.9e-21 104.0 81 66.7
Aqoxy2G04165 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 9.9e-21 104.0 81 66.7
BcaC07g40508 Brassica carinata HOM05D004131 ORTHO05D004778 9.9e-21 104.0 76 73.7
CSS0000211 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 9.9e-21 104.0 73 71.2
CSS0046112 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 9.9e-21 104.0 73 71.2
CAN.G448.4 Capsicum annuum HOM05D004131 ORTHO05D004778 9.9e-21 104.0 73 72.6
Cfa021469 Carpinus fangiana HOM05D004131 ORTHO05D004778 9.9e-21 104.0 81 66.7
COL.COLO4_04655 Corchorus olitorius HOM05D004131 ORTHO05D004778 9.9e-21 104.0 78 67.9
BcaB02g08224 Brassica carinata HOM05D004131 ORTHO05D004778 1.3e-20 103.6 131 64.1
Sabra07G0113200 Salix brachista HOM05D004131 ORTHO05D004778 1.3e-20 103.6 81 65.4
CsaV3_5G040580 Cucumis sativus L. HOM05D004131 ORTHO05D004778 2.2e-20 102.8 171 61.4
Lju470A13G17 Lonicera japonica HOM05D004131 ORTHO05D004778 2.2e-20 102.8 78 69.2
Actinidia28972 Actinidia chinensis HOM05D004131 ORTHO05D004778 2.9e-20 102.4 73 68.5
CANSAT56G2001 Cannabis sativa HOM05D004131 ORTHO05D004778 2.9e-20 102.4 72 72.2
AUR62002422 Chenopodium quinoa HOM05D004131 ORTHO05D004778 2.9e-20 102.4 84 63.1
Cc03_g14990 Coffea canephora HOM05D004131 ORTHO05D004778 2.9e-20 102.4 81 64.2
AUR62023766 Chenopodium quinoa HOM05D004131 ORTHO05D004778 3.8e-20 102.1 84 63.1
PGR042G3815 Punica granatum HOM05D004131 ORTHO05D004778 3.8e-20 102.1 77 66.2
MELO3C022231.2 Cucumis melo HOM05D004131 ORTHO05D004778 4.9e-20 101.7 81 65.4
Lalb_Chr05g0218801 Lupinus albus HOM05D004131 ORTHO05D004778 8.4e-20 100.9 81 63.0
Potri.017G010100 Populus trichocarpa HOM05D004131 ORTHO05D004778 8.4e-20 100.9 86 64.0
HPP92_023727 Vanilla planifolia HOM05D004131 ORTHO05D004778 1.1e-19 100.5 87 62.1
CiPaw.01G198800 Carya illinoinensis HOM05D004131 ORTHO05D004778 1.4e-19 100.1 75 68.0
HanXRQChr02g0059071 Helianthus annuus HOM05D004131 ORTHO05D004778 1.4e-19 100.1 72 69.4
Lsat_1_v5_gn_7_67880 Lactuca sativa HOM05D004131 ORTHO05D004778 1.4e-19 100.1 76 67.1
Sabra17G0009400 Salix brachista HOM05D004131 ORTHO05D004778 1.4e-19 100.1 86 62.8
Lj6C265T11 Lonicera japonica HOM05D004131 ORTHO05D004778 1.9e-19 99.8 78 65.4
SalBow3G2571 Salvia bowleyana HOM05D004131 ORTHO05D004778 1.9e-19 99.8 73 69.9
ATR0743G176 Amborella trichopoda HOM05D004131 ORTHO05D004778 2.4e-19 99.4 76 67.1
Hund12374 Selenicereus undatus HOM05D004131 ORTHO05D004778 2.4e-19 99.4 73 68.5
SalBow6G7192 Salvia bowleyana HOM05D004131 ORTHO05D004778 3.2e-19 99.0 81 66.7
arahy.Tifrunner.gnm1.ann1.GY80IK Arachis hypogaea HOM05D004131 ORTHO05D004778 5.4e-19 98.2 105 52.4
EL10Ac3g06119 Beta vulgaris HOM05D004131 ORTHO05D004778 5.4e-19 98.2 73 68.5
Zm00001eb425720 Zea mays HOM05D004131 ORTHO05D004778 9.3e-19 97.4 72 69.4
CDE08G0022 Ceratophyllum demersum HOM05D004131 ORTHO05D004778 1.2e-18 97.1 81 61.7
Sc13g0007290 Simmondsia chinensis HOM05D004131 ORTHO05D004778 1.2e-18 97.1 71 67.6
MSTRG.24561 Avicennia marina HOM05D004131 ORTHO05D004778 1.6e-18 96.7 81 60.5
BcaC07g40452 Brassica carinata HOM05D004131 ORTHO05D004778 2.7e-18 95.9 127 82.7
SEGI_19170 Sequoiadendron giganteum HOM05D004131 ORTHO05D004778 4.6e-18 95.1 86 59.3
CiPaw.02G123300 Carya illinoinensis HOM05D004131 ORTHO05D004778 1.3e-17 93.6 72 66.7
AagrBONN_evm.TU.Sc2ySwM_344.2765 Anthoceros agrestis HOM05D004131 ORTHO05D004778 2.3e-17 92.8 80 62.5
Eucgr.G01598 Eucalyptus grandis HOM05D004131 ORTHO05D004778 1.1e-16 90.5 71 63.4
Eucgr.L00027 Eucalyptus grandis HOM05D004131 ORTHO05D004778 1.1e-16 90.5 71 63.4
Mapoly0055s0100 Marchantia polymorpha HOM05D004131 ORTHO05D004778 1.1e-16 90.5 81 59.3
Pp3c3_18840 Physcomitrium patens HOM05D004131 ORTHO05D004778 2.5e-16 89.4 85 58.8
SMO364G0381 Selaginella moellendorffii HOM05D004131 ORTHO05D004778 3.3e-16 89.0 71 64.8
Carub.0005s2652 Capsella rubella HOM05D004131 ORTHO05D004778 2.8e-15 85.9 121 77.7
vmacro15701 Vaccinium macrocarpon HOM05D004131 ORTHO05D004778 1.4e-14 83.6 134 40.3
BcaB02g07200 Brassica carinata HOM05D004131 ORTHO05D004778 6.4e-12 74.7 117 69.2
BcaB05g25112 Brassica carinata HOM05D004131 ORTHO05D004778 1.4e-11 73.6 125 71.2
CBR_g6538 Chara braunii HOM05D004131 ORTHO05D004778 1.4e-11 73.6 74 51.4
Rhsim02G0086100 Rhododendron simsii HOM05D004131 ORTHO05D004778 1.9e-11 73.2 161 33.5
BcaB05g25107 Brassica carinata HOM05D004131 ORTHO05D004778 3.2e-11 72.4 125 67.2
Aqoxy604s001 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 7.9e-10 67.8 59 64.4
Lj6C255T9 Lonicera japonica HOM05D004131 ORTHO05D004778 5.1e-09 65.1 72 52.8
QL10p058548 Quercus lobata HOM05D004131 ORTHO05D004778 5.1e-09 65.1 37 78.4
QL10p059325 Quercus lobata HOM05D004131 ORTHO05D004778 5.1e-09 65.1 37 78.4
BcaB02g07199 Brassica carinata HOM05D004131 ORTHO05D004778 1.5e-08 63.5 46 73.9
RhsimUnG0015600 Rhododendron simsii HOM05D004131 ORTHO05D004778 1.9e-08 63.2 74 50.0
BcaB05g25109 Brassica carinata HOM05D004131 ORTHO05D004778 2.5e-08 62.8 53 73.6
Oeu050314.3 Olea europaea HOM05D004131 ORTHO05D004778 4.3e-08 62.0 46 67.4
BcaB05g25110 Brassica carinata HOM05D004131 ORTHO05D004778 7.4e-08 61.2 53 71.7
Sed0017538 Sechium edule HOM05D004131 ORTHO05D004778 9.6e-08 60.8 33 81.8
BcaB05g25118 Brassica carinata HOM05D004131 ORTHO05D004778 1.3e-07 60.5 48 72.9
BcaB05g25113 Brassica carinata HOM05D004131 ORTHO05D004778 2.1e-07 59.7 47 72.3
BraA09t40640Z Brassica rapa HOM05D004131 ORTHO05D004778 2.8e-07 59.3 48 68.8
BcaB05g25117 Brassica carinata HOM05D004131 ORTHO05D004778 3.7e-07 58.9 50 68.0
QL10p058544 Quercus lobata HOM05D004131 ORTHO05D004778 3.7e-07 58.9 45 62.2
Actinidia11437 Actinidia chinensis HOM05D004131 ORTHO05D004778 6.2e-07 58.2 33 72.7
QL10p059329 Quercus lobata HOM05D004131 ORTHO05D004778 6.2e-07 58.2 40 67.5
Cre16.g660850 Chlamydomonas reinhardtii HOM05D004131 ORTHO05D004778 1.1e-06 57.4 82 45.1
MSTRG.9725 Avicennia marina HOM05D005043 ORTHO05D000110 1.4e-06 57.0 93 40.9
Thecc.04G162100 Theobroma cacao HOM05D004131 ORTHO05D004778 1.4e-06 57.0 45 66.7
BcaNung06582 Brassica carinata HOM05D004131 ORTHO05D004778 1.8e-06 56.6 34 82.4
ClCG08G000030 Citrullus lanatus HOM05D004131 ORTHO05D004778 2.4e-06 56.2 65 50.8


User provided reference genes

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