Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40434 Brassica carinata HOM05D006197 ORTHO05D007718 2.5e-49 198.4 93 100.0
BcaC07g40556 Brassica carinata HOM05D006197 ORTHO05D007718 1.8e-47 192.2 93 96.8
A09p52120 Brassica napus HOM05D006197 ORTHO05D007718 1.8e-47 192.2 93 96.8
BcaC08g45013 Brassica carinata HOM05D006197 ORTHO05D007718 1.8e-44 182.2 93 91.4
BolC6t37808H Brassica oleracea HOM05D006197 ORTHO05D007718 1.8e-44 182.2 93 91.4
C06p26450 Brassica napus HOM05D006197 ORTHO05D007718 4.1e-44 181.0 93 90.3
Thhalv10006335m.g Eutrema salsugineum HOM05D006197 ORTHO05D007718 9.2e-44 179.9 98 87.8
BcaB02g07441 Brassica carinata HOM05D006197 ORTHO05D007718 1.2e-43 179.5 98 87.8
AL5G41940 Arabidopsis lyrata HOM05D006197 ORTHO05D007718 3.5e-43 177.9 98 87.8
AT3G59840 Arabidopsis thaliana HOM05D006197 ORTHO05D007718 3.5e-43 177.9 98 87.8
Carub.0005s2656 Capsella rubella HOM05D006197 ORTHO05D007718 3.5e-43 177.9 98 87.8
A07p24860 Brassica napus HOM05D006197 ORTHO05D007718 4.6e-43 177.6 94 90.4
BraA07t30130Z Brassica rapa HOM05D006197 ORTHO05D007718 4.6e-43 177.6 94 90.4
Sp5g03300 Schrenkiella parvula HOM05D006197 ORTHO05D007718 5.0e-42 174.1 98 86.7
CARHR170180 Cardamine hirsuta HOM05D006197 ORTHO05D007718 5.6e-41 170.6 93 86.0
Aa31LG10G14080 Aethionema arabicum HOM05D006197 ORTHO05D007718 1.2e-40 169.5 98 83.7
BolC8t51081H Brassica oleracea HOM05D000403 ORTHO05D004426 2.3e-39 165.2 88 87.5
THA.LOC104819961 Tarenaya hassleriana HOM05D006197 ORTHO05D007718 1.3e-37 159.5 100 78.0
Gohir.D08G180000 Gossypium hirsutum HOM05D006197 ORTHO05D007718 4.6e-35 151.0 93 74.2
Gorai.004G188500 Gossypium raimondii HOM05D006197 ORTHO05D007718 4.6e-35 151.0 93 74.2
Gohir.A04G000300 Gossypium hirsutum HOM05D006197 ORTHO05D007718 1.7e-34 149.1 93 73.1
Gohir.A08G159600 Gossypium hirsutum HOM05D006197 ORTHO05D007718 3.9e-34 147.9 93 72.0
Duzib068G0126 Durio zibethinus HOM05D006197 ORTHO05D007718 8.6e-34 146.7 93 69.9
Duzib205G0278 Durio zibethinus HOM05D006197 ORTHO05D007718 1.9e-33 145.6 93 69.9
Cpa.g.sc6.409 Carica papaya HOM05D006197 ORTHO05D007718 2.5e-33 145.2 93 72.0
Gorai.008G229000 Gossypium raimondii HOM05D006197 ORTHO05D007718 6.2e-32 140.6 93 67.7
COL.COLO4_17110 Corchorus olitorius HOM05D006197 ORTHO05D007718 1.8e-31 139.0 93 67.7
Atru.chr6.1773 Acer truncatum HOM05D006197 ORTHO05D007718 2.3e-31 138.7 98 72.4
Eucgr.E00313 Eucalyptus grandis HOM05D006197 ORTHO05D007718 5.2e-31 137.5 97 68.0
MBI11_g07528_MAGBIO Magnolia biondii HOM05D006197 ORTHO05D007718 5.2e-31 137.5 103 67.0
MD16G1269400 Malus domestica HOM05D006197 ORTHO05D007718 6.8e-31 137.1 96 67.7
Prupe.5G046200 Prunus persica HOM05D006197 ORTHO05D007718 1.5e-30 136.0 94 70.2
Thecc.03G234100 Theobroma cacao HOM05D006197 ORTHO05D007718 2.0e-30 135.6 93 65.6
Gohir.D12G213400 Gossypium hirsutum HOM05D006197 ORTHO05D007718 4.4e-30 134.4 93 65.6
CiPaw.11G087500 Carya illinoinensis HOM05D006197 ORTHO05D007718 5.8e-30 134.0 100 65.0
PGR042G3581 Punica granatum HOM05D006197 ORTHO05D007718 1.3e-29 132.9 100 64.0
SalBow1G7863 Salvia bowleyana HOM05D006197 ORTHO05D007718 2.2e-29 132.1 101 66.3
Manes.15G173000 Manihot esculenta HOM05D006197 ORTHO05D007718 3.7e-29 131.3 96 65.6
TWI81G0993 Tripterygium wilfordii HOM05D006197 ORTHO05D007718 6.4e-29 130.6 99 66.7
MBI02_g29718_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009071 1.1e-28 129.8 99 66.7
Potri.001G146700 Populus trichocarpa HOM05D006197 ORTHO05D007718 1.1e-28 129.8 99 64.6
Haze_08298 Corylus avellana HOM05D006197 ORTHO05D007718 1.4e-28 129.4 100 65.0
CANSAT64G2368 Cannabis sativa HOM05D006197 ORTHO05D007718 1.9e-28 129.0 106 58.5
Ciclev10033154m.g Citrus clementina HOM05D006197 ORTHO05D007718 2.4e-28 128.6 105 63.8
Cfa012386 Carpinus fangiana HOM05D006197 ORTHO05D007718 3.2e-28 128.3 100 64.0
FAN04G1051 Fragaria x ananassa HOM05D006197 ORTHO05D007718 3.2e-28 128.3 94 62.8
FAN18G0540 Fragaria x ananassa HOM05D006197 ORTHO05D007718 3.2e-28 128.3 95 66.3
Hma1.2p1_0311F.1_g121310 Hydrangea macrophylla HOM05D006197 ORTHO05D007718 3.2e-28 128.3 101 63.4
GSVIVG01013230001 Vitis vinifera HOM05D006197 ORTHO05D007718 3.2e-28 128.3 99 66.7
Sabra01G0115400 Salix brachista HOM05D006197 ORTHO05D007718 4.1e-28 127.9 99 63.6
Dinv25183 Davidia involucrata HOM05D002285 ORTHO05D009255 7.1e-28 127.1 102 59.8
Cc08_g01810 Coffea canephora HOM05D006197 ORTHO05D007718 1.2e-27 126.3 103 62.1
Cc00_g23310 Coffea canephora HOM05D006197 ORTHO05D007718 1.6e-27 125.9 103 61.2
Cc00_g30230 Coffea canephora HOM05D006197 ORTHO05D007718 1.6e-27 125.9 103 62.1
FAN08G0099 Fragaria x ananassa HOM05D006197 ORTHO05D007718 1.6e-27 125.9 95 64.2
arahy.Tifrunner.gnm1.ann1.M9L3KI Arachis hypogaea HOM05D006197 ORTHO05D007718 2.7e-27 125.2 105 61.0
arahy.Tifrunner.gnm1.ann1.PC0NS4 Arachis hypogaea HOM05D006197 ORTHO05D007718 2.7e-27 125.2 105 61.0
Dinv28915 Davidia involucrata HOM05D006197 ORTHO05D007718 4.6e-27 124.4 102 61.8
Peaxi162Scf00084g00099 Petunia axillaris HOM05D006197 ORTHO05D007718 4.6e-27 124.4 94 69.1
Sed0016057 Sechium edule HOM05D006197 ORTHO05D007718 4.6e-27 124.4 94 62.8
Rhsim11G0011100 Rhododendron simsii HOM05D006197 ORTHO05D007718 6.0e-27 124.0 100 62.0
ECA240G0414 Erigeron canadensis HOM05D006197 ORTHO05D007718 7.8e-27 123.6 106 60.4
FAN13G1034 Fragaria x ananassa HOM05D006197 ORTHO05D007718 7.8e-27 123.6 91 61.5
Cc00_g26570 Coffea canephora HOM05D006197 ORTHO05D007718 1.0e-26 123.2 103 60.2
Sopen05g026900 Solanum pennellii HOM05D006197 ORTHO05D007718 1.0e-26 123.2 104 63.5
Sopen08g025860 Solanum pennellii HOM05D006197 ORTHO05D007718 1.0e-26 123.2 104 63.5
PGSC0003DMG400024214 Solanum tuberosum HOM05D006197 ORTHO05D007718 1.0e-26 123.2 104 63.5
HanXRQChr08g0234831 Helianthus annuus HOM05D006197 ORTHO05D007718 1.3e-26 122.9 108 59.3
Lsat_1_v5_gn_6_66400 Lactuca sativa HOM05D006197 ORTHO05D007718 1.3e-26 122.9 111 56.8
Nitab4.5_0006693g0020 Nicotiana tabacum HOM05D006197 ORTHO05D007718 1.3e-26 122.9 103 61.2
Glyma.11G041000 Glycine max HOM05D006197 ORTHO05D007718 1.7e-26 122.5 99 62.6
Sed0004723 Sechium edule HOM05D006197 ORTHO05D007718 1.7e-26 122.5 100 61.0
CSS0031892 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 2.3e-26 122.1 107 60.7
CSS0033989 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 2.3e-26 122.1 107 60.7
CSS0037645 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 2.3e-26 122.1 107 60.7
Nn1g03717 Nelumbo nucifera HOM05D006197 ORTHO05D007718 3.9e-26 121.3 95 60.0
Oeu014592.2 Olea europaea HOM05D006197 ORTHO05D007718 3.9e-26 121.3 103 58.3
QL12p007107 Quercus lobata HOM05D006197 ORTHO05D007718 3.9e-26 121.3 103 59.2
RcHm_v2.0_Chr7g0208331 Rosa chinensis HOM05D006197 ORTHO05D007718 3.9e-26 121.3 98 60.2
Solyc08g077280.1 Solanum lycopersicum HOM05D006197 ORTHO05D007718 5.1e-26 120.9 104 62.5
Ca_24632_v3 Cicer arietinum L. HOM05D006197 ORTHO05D007718 6.6e-26 120.6 102 60.8
Nitab4.5_0002055g0120 Nicotiana tabacum HOM05D006197 ORTHO05D007718 8.6e-26 120.2 104 62.5
Glyma.01G201200 Glycine max HOM05D006197 ORTHO05D007718 1.1e-25 119.8 105 59.0
Migut.N01790 Erythranthe guttata HOM05D006197 ORTHO05D007718 1.5e-25 119.4 107 59.8
VMungo1215G1228 Vigna mungo HOM05D006197 ORTHO05D007718 1.9e-25 119.0 103 60.2
MELO3C003373.2 Cucumis melo HOM05D006197 ORTHO05D007718 2.5e-25 118.6 101 59.4
Medtr5g013975 Medicago truncatula HOM05D006197 ORTHO05D007718 3.3e-25 118.2 106 57.5
TWI15G0656 Tripterygium wilfordii HOM05D006197 ORTHO05D007718 5.6e-25 117.5 100 63.0
Oeu006551.1 Olea europaea HOM05D006197 ORTHO05D007718 9.5e-25 116.7 103 56.3
Aqoxy1G03814 Aquilegia oxysepala HOM05D006197 ORTHO05D007718 1.2e-24 116.3 102 57.8
Duzib084G1370 Durio zibethinus HOM05D006197 ORTHO05D007718 1.2e-24 116.3 93 59.1
VMungo1215G3393 Vigna mungo HOM05D006197 ORTHO05D007718 1.2e-24 116.3 104 58.7
DCAR_008300 Daucus carota HOM05D006197 ORTHO05D007718 2.1e-24 115.5 104 59.6
Phvul.002G004500 Phaseolus vulgaris HOM05D006197 ORTHO05D007718 2.1e-24 115.5 102 59.8
CsaV3_3G049530 Cucumis sativus L. HOM05D006197 ORTHO05D007718 2.8e-24 115.2 103 56.3
unitig_747.g21291 Utricularia gibba HOM05D006197 ORTHO05D007718 2.8e-24 115.2 104 55.8
TAR624G0346 Trochodendron aralioides HOM05D006197 ORTHO05D007718 3.6e-24 114.8 96 57.3
PSO832G1675 Papaver somniferum HOM05D006197 ORTHO05D007718 4.7e-24 114.4 98 56.1
Cc00_g31810 Coffea canephora HOM05D006197 ORTHO05D007718 6.2e-24 114.0 87 64.4
PSO210G4997 Papaver somniferum HOM05D006197 ORTHO05D007718 6.2e-24 114.0 98 56.1
AUR62007231 Chenopodium quinoa HOM05D006197 ORTHO05D007718 1.1e-23 113.2 98 59.2
Lj2g0021118 Lotus japonicus HOM05D006197 ORTHO05D007718 1.1e-23 113.2 100 58.0
Lalb_Chr09g0323941 Lupinus albus HOM05D006197 ORTHO05D007718 2.3e-23 112.1 118 50.8
AUR62018769 Chenopodium quinoa HOM05D006197 ORTHO05D007718 5.2e-23 110.9 99 59.6
Actinidia03393 Actinidia chinensis HOM05D004955 ORTHO05D005965 1.2e-22 109.8 91 60.4
Psat2g174760 Pisum sativum HOM05D006197 ORTHO05D007718 5.8e-22 107.5 103 51.5
Ah.12g053650 Amaranthus hybridus HOM05D006197 ORTHO05D007718 1.7e-21 105.9 95 55.8
Cc08_g02050 Coffea canephora HOM05D006197 ORTHO05D007718 1.7e-21 105.9 84 64.3
Sc01g0007760 Simmondsia chinensis HOM05D006197 ORTHO05D007718 1.7e-21 105.9 65 76.9
Cc08_g01990 Coffea canephora HOM05D006197 ORTHO05D007718 2.9e-21 105.1 67 73.1
Os05g0500450 Oryza sativa ssp. japonica HOM05D006197 ORTHO05D007718 2.9e-21 105.1 100 56.0
EL10Ac5g12195 Beta vulgaris HOM05D006197 ORTHO05D007718 4.9e-21 104.4 97 56.7
Phvul.002G003700 Phaseolus vulgaris HOM05D006197 ORTHO05D007718 2.4e-20 102.1 102 52.9
TPR.G6747 Trifolium pratense HOM05D006197 ORTHO05D007718 5.4e-20 100.9 62 72.6
ATR1088G052 Amborella trichopoda HOM05D006197 ORTHO05D007718 2.1e-19 99.0 85 57.6
Cc08_g01910 Coffea canephora HOM05D006197 ORTHO05D007718 7.8e-19 97.1 95 55.8
AagrBONN_evm.TU.Sc2ySwM_368.296 Anthoceros agrestis HOM05D006197 ORTHO05D007718 1.2e-16 89.7 67 56.7
Pp3c14_9970 Physcomitrium patens HOM05D006197 ORTHO05D007718 1.2e-16 89.7 82 50.0
Eucgr.C01972 Eucalyptus grandis HOM05D006197 ORTHO05D007718 1.1e-15 86.7 84 50.0
Mapoly0127s0016 Marchantia polymorpha HOM05D006197 ORTHO05D007718 1.1e-15 86.7 86 44.2
Mapoly0046s0110 Marchantia polymorpha HOM05D006197 ORTHO05D007718 8.9e-15 83.6 85 47.1
Nn1g08520 Nelumbo nucifera HOM05D006197 ORTHO05D007718 8.9e-15 83.6 90 46.7
CBR_g8168 Chara braunii HOM05D006197 ORTHO05D007718 2.6e-14 82.0 52 67.3
CAN.G799.18 Capsicum annuum HOM05D006197 ORTHO05D007718 3.2e-12 75.1 55 65.5
SMO119G0374 Selaginella moellendorffii HOM05D006197 ORTHO05D007718 4.6e-11 71.2 50 68.0
Cc08_g01940 Coffea canephora HOM05D000011 ORTHO05D000157 6.6e-10 67.4 32 84.4
Migut.E01523 Erythranthe guttata HOM05D006197 ORTHO05D007718 7.3e-09 63.9 70 48.6
Migut.E01526 Erythranthe guttata HOM05D006197 ORTHO05D007718 9.6e-09 63.5 70 47.1
TPR.G6988 Trifolium pratense HOM05D006197 ORTHO05D007718 1.1e-07 60.1 60 48.3


User provided reference genes

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