Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40387 Brassica carinata HOM05D004060 ORTHO05D004967 9.0e-101 370.9 299 100.0
A09p50400 Brassica napus HOM05D004060 ORTHO05D004967 7.9e-89 331.3 299 92.3
BcaC07g40371 Brassica carinata HOM05D004060 ORTHO05D004967 2.3e-88 329.7 300 90.3
C08p33070 Brassica napus HOM05D004060 ORTHO05D004967 2.3e-88 329.7 300 90.3
BolC8t50907H Brassica oleracea HOM05D004060 ORTHO05D004967 2.3e-88 329.7 300 90.3
BraA09t40492Z Brassica rapa HOM05D004060 ORTHO05D004967 1.9e-87 326.6 299 93.3
Sp5g05050 Schrenkiella parvula HOM05D004060 ORTHO05D004967 1.3e-75 287.3 300 82.7
Thhalv10006130m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 2.2e-70 270.0 304 83.2
CARHR167760 Cardamine hirsuta HOM05D004060 ORTHO05D004967 3.1e-69 266.2 299 75.3
AL5G39120 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 5.9e-68 261.9 307 76.9
AT3G57540 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 3.0e-64 249.6 307 74.3
Carub.0005s2438 Capsella rubella HOM05D004060 ORTHO05D004967 7.5e-63 245.0 307 73.9
BcaB02g07595 Brassica carinata HOM05D004060 ORTHO05D004967 5.9e-52 208.8 302 70.2
Thhalv10017761m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 3.5e-36 156.4 302 64.2
Aa31LG10G12370 Aethionema arabicum HOM05D004060 ORTHO05D004967 1.9e-34 150.6 315 59.7
AT2G41870 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 1.8e-32 144.1 309 60.2
BcaNung07195 Brassica carinata HOM05D004060 ORTHO05D004967 5.2e-32 142.5 304 58.2
BraA05t19254Z Brassica rapa HOM05D004060 ORTHO05D004967 9.8e-31 138.3 306 57.5
A05p02610 Brassica napus HOM05D004060 ORTHO05D004967 1.3e-30 137.9 306 57.5
Carub.0004s2418 Capsella rubella HOM05D004060 ORTHO05D004967 1.7e-30 137.5 313 59.1
CARHR136960 Cardamine hirsuta HOM05D004060 ORTHO05D004967 1.7e-30 137.5 302 49.7
C04p03110 Brassica napus HOM05D004060 ORTHO05D004967 4.9e-30 136.0 305 49.5
BolC4t21952H Brassica oleracea HOM05D004060 ORTHO05D004967 4.9e-30 136.0 305 49.5
THA.LOC104824453 Tarenaya hassleriana HOM05D004060 ORTHO05D004967 6.4e-30 135.6 307 62.9
AL4G40200 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 1.9e-29 134.0 310 56.5
Sp4g24140 Schrenkiella parvula HOM05D004060 ORTHO05D004967 3.0e-27 126.7 307 59.9
ClCG10G016620 Citrullus lanatus HOM05D004060 ORTHO05D004967 1.2e-25 121.3 287 53.7
CsaV3_3G039720 Cucumis sativus L. HOM05D004060 ORTHO05D004967 4.7e-25 119.4 290 54.5
Oeu064312.1 Olea europaea HOM05D004060 ORTHO05D004967 4.7e-25 119.4 284 46.1
PGSC0003DMG400023721 Solanum tuberosum HOM05D004060 ORTHO05D004967 6.2e-25 119.0 277 55.6
Gohir.A11G312000 Gossypium hirsutum HOM05D004060 ORTHO05D004967 1.8e-24 117.5 272 56.6
MELO3C009714.2 Cucumis melo HOM05D004060 ORTHO05D004967 2.3e-24 117.1 292 53.8
Duzib128G1686 Durio zibethinus HOM05D004060 ORTHO05D004967 2.3e-24 117.1 268 53.4
VMungo1383G2713 Vigna mungo HOM05D004060 ORTHO05D004967 2.3e-24 117.1 286 54.2
Cpa.g.sc92.28 Carica papaya HOM05D004060 ORTHO05D004967 3.1e-24 116.7 275 47.3
Hma1.2p1_0696F.1_g204640 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 3.1e-24 116.7 292 56.5
Prupe.7G064800 Prunus persica HOM05D004060 ORTHO05D004967 6.8e-24 115.5 286 53.1
Thecc.05G159200 Theobroma cacao HOM05D004060 ORTHO05D004967 6.8e-24 115.5 281 57.3
TPR.G21399 Trifolium pratense HOM05D004060 ORTHO05D004967 8.9e-24 115.2 292 55.5
CAN.G128.15 Capsicum annuum HOM05D004060 ORTHO05D004967 1.2e-23 114.8 278 55.4
Ciclev10005594m.g Citrus clementina HOM05D004060 ORTHO05D004967 1.2e-23 114.8 282 58.5
Nitab4.5_0002841g0040 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.2e-23 114.8 279 56.3
MSTRG.6438 Avicennia marina HOM05D004060 ORTHO05D004967 3.4e-23 113.2 285 54.4
Cc06_g16910 Coffea canephora HOM05D004060 ORTHO05D004967 3.4e-23 113.2 280 55.7
Gohir.A11G312100 Gossypium hirsutum HOM05D004060 ORTHO05D004967 5.8e-23 112.5 272 55.9
Gohir.D11G328600 Gossypium hirsutum HOM05D004060 ORTHO05D004967 5.8e-23 112.5 272 55.9
Gorai.007G359900 Gossypium raimondii HOM05D004060 ORTHO05D004967 5.8e-23 112.5 272 55.9
Oeu033785.1 Olea europaea HOM05D004060 ORTHO05D004967 9.9e-23 111.7 281 53.0
Potri.006G053200 Populus trichocarpa HOM05D004060 ORTHO05D004967 9.9e-23 111.7 295 55.6
HanXRQChr10g0300071 Helianthus annuus HOM05D004060 ORTHO05D004967 1.3e-22 111.3 271 56.8
Manes.08G049300 Manihot esculenta HOM05D004060 ORTHO05D004967 1.7e-22 110.9 301 57.1
Nitab4.5_0001509g0060 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.7e-22 110.9 283 56.9
Sopen10g030840 Solanum pennellii HOM05D004060 ORTHO05D004967 2.2e-22 110.5 277 58.1
TWI53G1485 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 2.2e-22 110.5 270 57.4
Cfa016842 Carpinus fangiana HOM05D004060 ORTHO05D004967 6.4e-22 109.0 292 51.7
CiPaw.10G032000 Carya illinoinensis HOM05D004060 ORTHO05D004967 1.1e-21 108.2 294 53.4
Nitab4.5_0000733g0190 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.4e-21 107.8 276 55.4
Medtr7g091990 Medicago truncatula HOM05D004060 ORTHO05D004967 1.9e-21 107.5 289 54.7
Potri.016G054400 Populus trichocarpa HOM05D004060 ORTHO05D004967 3.2e-21 106.7 302 54.3
Actinidia09345 Actinidia chinensis HOM05D004060 ORTHO05D004967 5.4e-21 105.9 287 53.7
FAN05G0004 Fragaria x ananassa HOM05D004060 ORTHO05D004967 7.1e-21 105.5 300 55.3
TWI74G0684 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 7.1e-21 105.5 272 55.1
Duzib106G1229 Durio zibethinus HOM05D004060 ORTHO05D004967 9.2e-21 105.1 282 56.4
Sed0004660 Sechium edule HOM05D004060 ORTHO05D004967 9.2e-21 105.1 284 55.6
Haze_19884 Corylus avellana HOM05D004060 ORTHO05D004967 1.2e-20 104.8 284 50.4
Haze_19892 Corylus avellana HOM05D004060 ORTHO05D004967 1.2e-20 104.8 284 50.4
PGR004G1680 Punica granatum HOM05D004060 ORTHO05D004967 1.2e-20 104.8 278 51.8
Sabra06G0037600 Salix brachista HOM05D004060 ORTHO05D004967 1.2e-20 104.8 292 55.1
Nitab4.5_0001663g0020 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.6e-20 104.4 276 55.4
TAR057G0003 Trochodendron aralioides HOM05D004060 ORTHO05D004967 1.6e-20 104.4 286 54.5
FvH4_6g23510 Fragaria vesca HOM05D004060 ORTHO05D004967 2.1e-20 104.0 295 55.9
FAN14G3078 Fragaria x ananassa HOM05D004060 ORTHO05D004967 2.1e-20 104.0 295 55.9
FAN02G3665 Fragaria x ananassa HOM05D004060 ORTHO05D004967 2.7e-20 103.6 297 54.9
FAN09G1680 Fragaria x ananassa HOM05D004060 ORTHO05D004967 2.7e-20 103.6 297 54.9
Peaxi162Scf01287g00012 Petunia axillaris HOM05D004060 ORTHO05D004967 2.7e-20 103.6 242 56.6
COL.COLO4_28207 Corchorus olitorius HOM05D004060 ORTHO05D004967 3.5e-20 103.2 307 53.7
TAR369G1158 Trochodendron aralioides HOM05D004060 ORTHO05D004967 6.0e-20 102.4 284 53.2
CSS0022151 Camellia sinensis var. sinensis HOM05D004060 ORTHO05D004967 7.8e-20 102.1 293 54.9
CANSAT80G2886 Cannabis sativa HOM05D004060 ORTHO05D004967 7.8e-20 102.1 283 53.7
Manes.09G024700 Manihot esculenta HOM05D004060 ORTHO05D004967 1.0e-19 101.7 275 58.9
Duzib093G0278 Durio zibethinus HOM05D004060 ORTHO05D004967 1.3e-19 101.3 184 43.5
Aqoxy1G00285 Aquilegia oxysepala HOM05D004060 ORTHO05D004967 1.7e-19 100.9 280 51.1
Dinv02133 Davidia involucrata HOM05D004060 ORTHO05D004967 1.7e-19 100.9 286 54.5
QL07p021067 Quercus lobata HOM05D004060 ORTHO05D004967 2.3e-19 100.5 287 53.3
MSTRG.19874 Avicennia marina HOM05D004060 ORTHO05D004967 3.0e-19 100.1 289 53.6
Migut.J01771 Erythranthe guttata HOM05D004060 ORTHO05D004967 3.0e-19 100.1 272 54.4
Medtr1g052560 Medicago truncatula HOM05D004060 ORTHO05D004967 3.0e-19 100.1 275 52.0
TWI77G1037 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 6.6e-19 99.0 262 56.1
MBI02_g05658_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 1.1e-18 98.2 282 42.2
Rhsim03G0018200 Rhododendron simsii HOM05D004060 ORTHO05D004967 1.1e-18 98.2 304 53.9
Eucgr.A02379 Eucalyptus grandis HOM05D004060 ORTHO05D004967 1.5e-18 97.8 273 54.2
Lalb_Chr25g0287361 Lupinus albus HOM05D004060 ORTHO05D004967 1.5e-18 97.8 274 54.0
Glyma.19G141100 Glycine max HOM05D004060 ORTHO05D004967 2.5e-18 97.1 295 56.6
Lsat_1_v5_gn_5_162320 Lactuca sativa HOM05D004060 ORTHO05D004967 2.5e-18 97.1 276 53.6
MD14G1069500 Malus domestica HOM05D004060 ORTHO05D004967 2.5e-18 97.1 306 48.7
Psat3g079320 Pisum sativum HOM05D004060 ORTHO05D004967 2.5e-18 97.1 277 54.5
PSO339G1536 Papaver somniferum HOM05D004060 ORTHO05D004967 3.3e-18 96.7 301 51.2
TPR.G3730 Trifolium pratense HOM05D004060 ORTHO05D004967 4.3e-18 96.3 272 55.5
Phvul.001G135500 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 5.6e-18 95.9 210 36.7
Lalb_Chr20g0110781 Lupinus albus HOM05D004060 ORTHO05D004967 1.2e-17 94.7 306 52.6
RcHm_v2.0_Chr3g0481501 Rosa chinensis HOM05D004060 ORTHO05D004967 1.2e-17 94.7 301 49.5
DCAR_013590 Daucus carota HOM05D004060 ORTHO05D004967 1.6e-17 94.4 300 50.0
ECA248G2911 Erigeron canadensis HOM05D004060 ORTHO05D004967 1.6e-17 94.4 267 53.2
CiPaw.09G036400 Carya illinoinensis HOM05D004060 ORTHO05D004967 3.6e-17 93.2 234 60.3
HanXRQChr01g0008631 Helianthus annuus HOM05D004060 ORTHO05D004967 3.6e-17 93.2 265 54.0
Atru.chr1.1058 Acer truncatum HOM05D004060 ORTHO05D004967 6.2e-17 92.4 208 39.4
Ca_26888_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 6.2e-17 92.4 300 54.0
Dinv18064 Davidia involucrata HOM05D004060 ORTHO05D004967 6.2e-17 92.4 199 38.2
Nn7g36226 Nelumbo nucifera HOM05D004060 ORTHO05D004967 6.2e-17 92.4 195 39.5
ECA247G2970 Erigeron canadensis HOM05D004060 ORTHO05D004967 8.1e-17 92.0 163 42.3
Phvul.007G253600 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 1.4e-16 91.3 295 51.9
Sc13g0001870 Simmondsia chinensis HOM05D004060 ORTHO05D004967 1.8e-16 90.9 276 55.4
TAR633G1984 Trochodendron aralioides HOM05D004060 ORTHO05D004967 1.8e-16 90.9 264 53.0
SalBow6G3128 Salvia bowleyana HOM05D004060 ORTHO05D004967 3.1e-16 90.1 274 53.3
Nn2g15346 Nelumbo nucifera HOM05D004060 ORTHO05D004967 5.2e-16 89.4 198 39.4
vmacro22363 Vaccinium macrocarpon HOM05D004060 ORTHO05D004967 6.8e-16 89.0 296 49.3
EL10Ac3g07036 Beta vulgaris HOM05D004060 ORTHO05D004967 1.2e-15 88.2 304 50.7
Dinv02134 Davidia involucrata HOM05D004060 ORTHO05D004967 2.0e-15 87.4 284 48.6
VMungo0720G0143 Vigna mungo HOM05D004060 ORTHO05D004967 2.6e-15 87.0 296 50.7
Lju124C36T16 Lonicera japonica HOM05D004060 ORTHO05D004967 3.4e-15 86.7 193 39.9
Oeu017953.1 Olea europaea HOM05D004060 ORTHO05D004967 7.6e-15 85.5 275 45.1
HPP92_019624 Vanilla planifolia HOM05D004060 ORTHO05D004967 7.6e-15 85.5 180 37.8
ATR0332G033 Amborella trichopoda HOM05D004060 ORTHO05D004967 9.9e-15 85.1 267 49.8
Lj1g0010539 Lotus japonicus HOM05D004060 ORTHO05D004967 9.9e-15 85.1 294 51.4
arahy.Tifrunner.gnm1.ann1.AM9K84 Arachis hypogaea HOM05D004060 ORTHO05D004967 3.8e-14 83.2 253 60.1
arahy.Tifrunner.gnm1.ann1.GL61MB Arachis hypogaea HOM05D004060 ORTHO05D004967 3.8e-14 83.2 249 60.6
Actinidia24529 Actinidia chinensis HOM05D004060 ORTHO05D004967 4.9e-14 82.8 189 39.2
CAN.G676.50 Capsicum annuum HOM05D004060 ORTHO05D004967 4.9e-14 82.8 262 62.2
Peaxi162Scf00493g00316 Petunia axillaris HOM05D004060 ORTHO05D004967 1.1e-13 81.6 224 33.0
Solyc04g015520.3 Solanum lycopersicum HOM05D004060 ORTHO05D004967 1.1e-13 81.6 281 53.0
Lsat_1_v5_gn_9_27220 Lactuca sativa HOM05D004060 ORTHO05D004967 1.4e-13 81.3 161 38.5
Os03g0808300 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 1.9e-13 80.9 287 46.3
arahy.Tifrunner.gnm1.ann1.L89JBM Arachis hypogaea HOM05D004060 ORTHO05D004967 3.2e-13 80.1 290 50.3
Hma1.2p1_0247F.1_g101840 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 7.1e-13 79.0 242 54.5
Ca_08471_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 1.6e-12 77.8 204 34.3
FAN05G5649 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.6e-12 77.8 287 50.9
MSTRG.10823 Avicennia marina HOM05D004060 ORTHO05D004967 4.6e-12 76.3 221 40.7
PGSC0003DMG400027238 Solanum tuberosum HOM05D004060 ORTHO05D004967 4.6e-12 76.3 274 52.6
PSO384G1698 Papaver somniferum HOM05D004060 ORTHO05D004967 7.8e-12 75.5 218 34.9
Sopen04g007590 Solanum pennellii HOM05D004060 ORTHO05D004967 7.8e-12 75.5 280 56.1
SGA_v2.0_scaffold69G23102 Striga asiatica HOM05D004060 ORTHO05D004967 7.8e-12 75.5 198 36.9
Solyc10g080230.2 Solanum lycopersicum HOM05D004060 ORTHO05D004967 1.3e-11 74.7 141 44.7
Zm00001eb061820 Zea mays HOM05D004060 ORTHO05D004967 5.1e-11 72.8 193 32.1
MD12G1072300 Malus domestica HOM05D004060 ORTHO05D004967 8.7e-11 72.0 199 59.8
Glyma.02G182600 Glycine max HOM05D004060 ORTHO05D004967 1.5e-10 71.2 308 47.1
Os07g0569100 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 1.5e-10 71.2 280 51.8
Ca_29692_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 5.6e-10 69.3 162 69.8
SalBow1G5147 Salvia bowleyana HOM05D004060 ORTHO05D004967 3.6e-09 66.6 261 50.6
Lj2C380T14 Lonicera japonica HOM05D004060 ORTHO05D004967 6.2e-09 65.9 142 38.0
Glyma.03G138100 Glycine max HOM05D004060 ORTHO05D004967 1.1e-08 65.1 212 35.8
Glyma.10G099400 Glycine max HOM05D004060 ORTHO05D004967 1.8e-08 64.3 278 52.2
DCAR_020477 Daucus carota HOM05D004060 ORTHO05D004967 4.0e-08 63.2 214 31.8
arahy.Tifrunner.gnm1.ann1.49FMRE Arachis hypogaea HOM05D004060 ORTHO05D004967 5.8e-07 59.3 229 36.2
MBI04_g36073_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 5.8e-07 59.3 267 25.5
Os07g0208600 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 7.6e-07 58.9 263 46.0
Zm00001eb107230 Zea mays HOM05D004060 ORTHO05D004967 7.6e-07 58.9 163 49.1
Zm00001eb324720 Zea mays HOM05D004060 ORTHO05D004967 6.4e-06 55.8 316 46.2
arahy.Tifrunner.gnm1.ann1.N3K66E Arachis hypogaea HOM05D003004 ORTHO05D004967 8.4e-06 55.5 40 65.0
HanXRQChr10g0300061 Helianthus annuus HOM05D004060 ORTHO05D004967 8.4e-06 55.5 118 40.7


User provided reference genes

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