Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40284 Brassica carinata HOM05D009929 ORTHO05D009358 6.3e-230 800.4 406 100.0
C08p34440 Brassica napus HOM05D009929 ORTHO05D009358 6.3e-230 800.4 406 100.0
BolC8t51045H Brassica oleracea HOM05D009929 ORTHO05D009358 6.3e-230 800.4 406 100.0
BraA09t40607Z Brassica rapa HOM05D009929 ORTHO05D009358 7.7e-212 740.3 406 93.1
A09p51710 Brassica napus HOM05D009929 ORTHO05D009358 3.2e-210 734.9 406 93.3
Sp5g03710 Schrenkiella parvula HOM05D009929 ORTHO05D009358 6.0e-164 581.3 451 72.5
Thhalv10005962m.g Eutrema salsugineum HOM05D009929 ORTHO05D009358 2.2e-158 562.8 441 72.1
AL5G41340 Arabidopsis lyrata HOM05D009929 ORTHO05D009358 8.6e-155 550.8 458 69.2
BcaC07g40472 Brassica carinata HOM05D009929 ORTHO05D009358 8.4e-150 534.3 337 82.8
AT3G59430 Arabidopsis thaliana HOM05D009929 ORTHO05D009358 1.7e-147 526.6 458 67.7
Carub.0005s2617 Capsella rubella HOM05D009929 ORTHO05D009358 3.6e-145 518.8 458 66.2
CARHR169830 Cardamine hirsuta HOM05D009929 ORTHO05D009358 6.0e-124 448.4 458 61.1
Aa31LG1G25120 Aethionema arabicum HOM05D009929 ORTHO05D006942 1.5e-74 284.3 402 48.3
THA.LOC104803712 Tarenaya hassleriana HOM05D009929 ORTHO05D009358 2.6e-74 283.5 484 43.8
THA.LOC104800392 Tarenaya hassleriana HOM05D009929 ORTHO05D009358 7.5e-74 282.0 485 43.9
C06p26180 Brassica napus HOM05D009929 ORTHO05D009358 3.7e-49 199.9 168 67.3
BcaC08g44989 Brassica carinata HOM05D009929 ORTHO05D009358 5.1e-46 189.5 163 66.9
BcaC08g44988 Brassica carinata HOM05D009929 ORTHO05D009358 1.7e-30 137.9 178 51.7
BolC6t37781H Brassica oleracea HOM05D009929 ORTHO05D009358 6.6e-30 136.0 135 60.0
BolC6t37778H Brassica oleracea HOM05D009929 ORTHO05D009358 1.1e-24 118.6 136 55.9
BcaC08g44983 Brassica carinata HOM05D009929 ORTHO05D009358 4.2e-24 116.7 138 55.8
C06p26130 Brassica napus HOM05D009929 ORTHO05D009358 3.0e-22 110.5 114 57.0
QL10p049494 Quercus lobata HOM05D008235 ORTHO05D009358 3.1e-19 100.5 386 29.8
Sabra07G0105000 Salix brachista HOM05D008235 ORTHO05D009358 4.0e-19 100.1 363 30.0
Ciclev10019428m.g Citrus clementina HOM05D008235 ORTHO05D009358 6.9e-19 99.4 420 28.8
Potri.007G128500 Populus trichocarpa HOM05D008235 ORTHO05D009358 9.0e-19 99.0 356 29.8
Thecc.04G179500 Theobroma cacao HOM05D008235 ORTHO05D009358 1.5e-18 98.2 416 28.6
BolC6t37780H Brassica oleracea HOM05D009929 ORTHO05D009358 2.9e-17 94.0 127 50.4
Gorai.011G142400 Gossypium raimondii HOM05D008235 ORTHO05D009358 1.6e-15 88.2 303 31.7
Potri.017G029800 Populus trichocarpa HOM05D008235 ORTHO05D009358 1.6e-15 88.2 357 29.4
Sabra17G0019200 Salix brachista HOM05D008235 ORTHO05D009358 2.7e-15 87.4 430 29.1
Gohir.A10G137600 Gossypium hirsutum HOM05D008235 ORTHO05D009358 6.0e-15 86.3 303 30.0
Manes.11G121000 Manihot esculenta HOM05D008235 ORTHO05D009358 7.9e-15 85.9 420 29.3
Duzib212G0859 Durio zibethinus HOM05D008235 ORTHO05D009358 1.0e-14 85.5 322 30.4
CANSAT78G2326 Cannabis sativa HOM05D008235 ORTHO05D009358 3.0e-14 84.0 302 29.5
AUR62015381 Chenopodium quinoa HOM05D019141 ORTHO05D009358 6.7e-14 82.8 237 32.9
Gohir.D02G114100 Gossypium hirsutum HOM05D008235 ORTHO05D009358 1.5e-13 81.6 389 27.8
Manes.04G042909 Manihot esculenta HOM05D008235 ORTHO05D009358 3.3e-13 80.5 442 27.4
Gorai.005G128900 Gossypium raimondii HOM05D008235 ORTHO05D009358 5.6e-13 79.7 389 27.5
Dinv22732 Davidia involucrata HOM05D008235 ORTHO05D009358 2.8e-12 77.4 413 26.2
Dinv44188 Davidia involucrata HOM05D008235 ORTHO05D009358 6.2e-12 76.3 348 26.7
EL10Ac3g05943 Beta vulgaris HOM05D019141 ORTHO05D009358 2.4e-11 74.3 414 28.3
AUR62002309 Chenopodium quinoa HOM05D019141 ORTHO05D009358 5.3e-11 73.2 284 30.6
Haze_01504 Corylus avellana HOM05D008235 ORTHO05D009358 2.6e-10 70.9 321 25.2
Actinidia35979 Actinidia chinensis HOM05D008235 ORTHO05D009358 5.8e-10 69.7 409 25.7
ATR0824G133 Amborella trichopoda HOM05D008235 ORTHO05D009358 8.4e-09 65.9 273 27.1
Sc13g0006760 Simmondsia chinensis HOM05D008235 ORTHO05D009358 4.2e-08 63.5 259 29.7
Duzib151G0752 Durio zibethinus HOM05D008235 ORTHO05D009358 9.3e-08 62.4 52 63.5
Actinidia34601 Actinidia chinensis HOM05D008235 ORTHO05D009358 2.1e-07 61.2 263 27.8
Nn1g09629 Nelumbo nucifera HOM05D008235 ORTHO05D009358 4.6e-07 60.1 425 23.8
COL.COLO4_07668 Corchorus olitorius HOM05D008235 ORTHO05D009358 1.3e-06 58.5 191 31.9
Eucgr.A00279 Eucalyptus grandis HOM05D009929 ORTHO05D009358 1.3e-06 58.5 42 66.7
Duzib268G0443 Durio zibethinus HOM05D008235 ORTHO05D009358 1.8e-06 58.2 182 29.1
CSS0049607 Camellia sinensis var. sinensis HOM05D008235 ORTHO05D009358 3.0e-06 57.4 491 23.4
CSS0022265 Camellia sinensis var. sinensis HOM05D008235 ORTHO05D009358 3.9e-06 57.0 491 23.0
Aqoxy2G04121 Aquilegia oxysepala HOM05D008235 ORTHO05D009358 5.1e-06 56.6 314 27.7


User provided reference genes

Program Settings