Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40268 Brassica carinata HOM05D004553 ORTHO05D005426 2.5e-157 558.9 320 100.0
C08p33760 Brassica napus HOM05D004553 ORTHO05D005426 1.3e-150 536.6 321 97.8
BolC8t50975H Brassica oleracea HOM05D004553 ORTHO05D005426 3.0e-150 535.4 321 96.9
A09p50940 Brassica napus HOM05D004553 ORTHO05D005426 3.9e-150 535.0 321 96.6
BraA09t40540Z Brassica rapa HOM05D004553 ORTHO05D005426 3.9e-150 535.0 321 96.6
BcaC07g40188 Brassica carinata HOM05D004553 ORTHO05D005426 1.1e-144 516.9 320 91.9
Sp5g04540 Schrenkiella parvula HOM05D004553 ORTHO05D005426 5.4e-144 514.6 320 92.8
BcaB02g07544 Brassica carinata HOM05D004553 ORTHO05D005426 2.3e-142 509.2 316 94.0
Thhalv10006107m.g Eutrema salsugineum HOM05D004553 ORTHO05D005426 6.4e-137 491.1 320 89.7
BcaC08g44904 Brassica carinata HOM05D004553 ORTHO05D005426 4.1e-136 488.4 319 90.0
AT3G58180 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 1.6e-135 486.5 320 86.9
Carub.0005s2503 Capsella rubella HOM05D004553 ORTHO05D005426 1.6e-135 486.5 320 87.5
Aa31LG10G12900 Aethionema arabicum HOM05D004553 ORTHO05D005426 8.6e-134 480.7 312 88.5
AL5G39880 Arabidopsis lyrata HOM05D004553 ORTHO05D005426 8.6e-134 480.7 320 88.4
BolC6t37683H Brassica oleracea HOM05D004553 ORTHO05D005426 5.8e-130 468.0 310 89.7
A07p23970 Brassica napus HOM05D004553 ORTHO05D005426 2.3e-126 456.1 312 88.8
BraA07t30048Z Brassica rapa HOM05D004553 ORTHO05D005426 5.6e-125 451.4 310 88.4
C06p25240 Brassica napus HOM05D004553 ORTHO05D005426 1.3e-124 450.3 310 87.7
THA.LOC104802841 Tarenaya hassleriana HOM05D004553 ORTHO05D005426 4.5e-122 441.8 305 84.3
Duzib138G1605 Durio zibethinus HOM05D004553 ORTHO05D005426 4.8e-116 421.8 303 77.9
Cpa.g.sc50.47 Carica papaya HOM05D004553 ORTHO05D005426 1.4e-115 420.2 312 79.2
Gohir.D07G217100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 9.0e-115 417.5 311 71.1
Gohir.A07G211100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 1.5e-114 416.8 311 71.1
Gorai.001G251500 Gossypium raimondii HOM05D004553 ORTHO05D005426 2.2e-113 412.9 311 70.7
GSVIVG01028297001 Vitis vinifera HOM05D004553 ORTHO05D005426 4.9e-113 411.8 307 76.2
Cfa002394 Carpinus fangiana HOM05D004553 ORTHO05D005426 2.4e-112 409.5 308 71.1
Haze_24589 Corylus avellana HOM05D004553 ORTHO05D005426 1.2e-111 407.1 308 71.1
Haze_24593 Corylus avellana HOM05D004553 ORTHO05D005426 1.2e-111 407.1 308 71.1
Atru.chr5.1915 Acer truncatum HOM05D004553 ORTHO05D005426 2.1e-111 406.4 306 75.2
Potri.002G041400 Populus trichocarpa HOM05D004553 ORTHO05D005426 2.7e-111 406.0 309 69.3
CiPaw.03G261300 Carya illinoinensis HOM05D004553 ORTHO05D005426 6.0e-111 404.8 303 79.9
Ciclev10021217m.g Citrus clementina HOM05D004553 ORTHO05D005426 6.0e-111 404.8 302 71.2
Aqoxy5G00280 Aquilegia oxysepala HOM05D004553 ORTHO05D005426 4.3e-109 398.7 305 73.8
QL09p037745 Quercus lobata HOM05D004553 ORTHO05D005426 4.3e-109 398.7 307 75.6
Phvul.001G159000 Phaseolus vulgaris HOM05D004553 ORTHO05D005426 9.6e-109 397.5 307 74.3
Potri.005G221700 Populus trichocarpa HOM05D004553 ORTHO05D005426 1.6e-108 396.7 303 70.0
Dinv34597 Davidia involucrata HOM05D004553 ORTHO05D005426 2.8e-108 396.0 302 69.2
TAR636G3311 Trochodendron aralioides HOM05D004553 ORTHO05D005426 2.8e-108 396.0 293 78.5
Manes.05G087500 Manihot esculenta HOM05D004553 ORTHO05D005426 3.7e-108 395.6 312 73.4
CANSAT21G2336 Cannabis sativa HOM05D004553 ORTHO05D005426 4.8e-108 395.2 319 70.5
PGR044G0761 Punica granatum HOM05D004553 ORTHO05D005426 4.8e-108 395.2 304 68.1
Glyma.03G161100 Glycine max HOM05D004553 ORTHO05D005426 6.2e-108 394.8 303 74.3
HanXRQChr10g0281111 Helianthus annuus HOM05D004553 ORTHO05D005426 6.2e-108 394.8 303 68.3
MELO3C012740.2 Cucumis melo HOM05D004553 ORTHO05D005426 1.4e-107 393.7 305 67.9
MD05G1201100 Malus domestica HOM05D004553 ORTHO05D005426 1.4e-107 393.7 300 70.0
MD10G1187900 Malus domestica HOM05D004553 ORTHO05D005426 1.4e-107 393.7 304 69.4
MBI17_g17502_MAGBIO Magnolia biondii HOM05D004553 ORTHO05D005426 3.1e-107 392.5 304 69.4
TPR.G5760 Trifolium pratense HOM05D004553 ORTHO05D005426 5.3e-107 391.7 305 68.9
Nitab4.5_0000500g0290 Nicotiana tabacum HOM05D004553 ORTHO05D005426 1.5e-106 390.2 303 68.6
CsaV3_7G026990 Cucumis sativus L. HOM05D004553 ORTHO05D005426 2.0e-106 389.8 305 67.9
Hma1.2p1_0273F.1_g109950 Hydrangea macrophylla HOM05D004553 ORTHO05D005426 2.6e-106 389.4 301 69.1
Ca_02526_v3 Cicer arietinum L. HOM05D004553 ORTHO05D005426 5.8e-106 388.3 306 73.2
COL.COLO4_05596 Corchorus olitorius HOM05D004553 ORTHO05D005426 5.8e-106 388.3 304 67.4
Prupe.8G227700 Prunus persica HOM05D004553 ORTHO05D005426 5.8e-106 388.3 304 69.1
TPR.G18834 Trifolium pratense HOM05D004553 ORTHO05D005426 5.8e-106 388.3 318 66.0
Nn3g19599 Nelumbo nucifera HOM05D004553 ORTHO05D005426 1.0e-105 387.5 300 68.0
Sed0015397 Sechium edule HOM05D004553 ORTHO05D005426 1.3e-105 387.1 305 66.9
Actinidia21228 Actinidia chinensis HOM05D004553 ORTHO05D005426 1.7e-105 386.7 302 67.9
Medtr7g096510 Medicago truncatula HOM05D004553 ORTHO05D005426 1.7e-105 386.7 305 67.9
ClCG09G008080 Citrullus lanatus HOM05D004553 ORTHO05D005426 2.9e-105 386.0 305 66.9
Nitab4.5_0001839g0070 Nicotiana tabacum HOM05D004553 ORTHO05D005426 2.9e-105 386.0 305 67.9
CAN.G572.12 Capsicum annuum HOM05D004553 ORTHO05D005426 3.8e-105 385.6 305 67.9
Nitab4.5_0009451g0050 Nicotiana tabacum HOM05D004553 ORTHO05D005426 3.8e-105 385.6 305 67.9
Solyc08g077830.1 Solanum lycopersicum HOM05D004553 ORTHO05D005426 3.8e-105 385.6 303 68.3
AUR62024744 Chenopodium quinoa HOM05D004553 ORTHO05D005426 6.5e-105 384.8 299 69.9
FvH4_2g22010 Fragaria vesca HOM05D004553 ORTHO05D005426 6.5e-105 384.8 313 75.1
FAN20G1146 Fragaria x ananassa HOM05D004553 ORTHO05D005426 6.5e-105 384.8 304 75.3
TAR365G0062 Trochodendron aralioides HOM05D004553 ORTHO05D005426 6.5e-105 384.8 291 69.8
RcHm_v2.0_Chr6g0288871 Rosa chinensis HOM05D004553 ORTHO05D005426 8.4e-105 384.4 304 75.7
VMungo1383G1775 Vigna mungo HOM05D004553 ORTHO05D005426 8.4e-105 384.4 298 73.8
Sopen08g026340 Solanum pennellii HOM05D004553 ORTHO05D005426 1.1e-104 384.0 303 68.0
Actinidia23392 Actinidia chinensis HOM05D004553 ORTHO05D005426 3.2e-104 382.5 302 67.2
Sed0016387 Sechium edule HOM05D004553 ORTHO05D005426 3.2e-104 382.5 305 65.9
PGSC0003DMG400026216 Solanum tuberosum HOM05D004553 ORTHO05D005426 3.2e-104 382.5 303 68.0
TWI12G0019 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 3.2e-104 382.5 292 77.1
Migut.D00406 Erythranthe guttata HOM05D004553 ORTHO05D005426 7.1e-104 381.3 305 67.2
Psat3g059120 Pisum sativum HOM05D004553 ORTHO05D005426 7.1e-104 381.3 312 70.2
arahy.Tifrunner.gnm1.ann1.9FA7V6 Arachis hypogaea HOM05D004553 ORTHO05D005426 1.2e-103 380.6 304 70.1
Ah.02g111810 Amaranthus hybridus HOM05D004553 ORTHO05D005426 1.6e-103 380.2 298 68.8
Hund09587 Selenicereus undatus HOM05D004553 ORTHO05D005426 1.6e-103 380.2 298 73.2
AUR62011903 Chenopodium quinoa HOM05D004553 ORTHO05D005426 2.1e-103 379.8 299 68.9
FAN24G1077 Fragaria x ananassa HOM05D004553 ORTHO05D005426 4.6e-103 378.6 320 73.4
EL10Ac5g10427 Beta vulgaris HOM05D004553 ORTHO05D005426 6.0e-103 378.3 298 72.5
FAN15G2654 Fragaria x ananassa HOM05D004553 ORTHO05D005426 7.9e-103 377.9 320 73.1
FAN27G3448 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.8e-102 376.7 302 75.5
Lalb_Chr20g0107851 Lupinus albus HOM05D004553 ORTHO05D005426 2.3e-102 376.3 302 71.2
Rhsim01G0266400 Rhododendron simsii HOM05D004553 ORTHO05D005426 5.1e-102 375.2 296 67.9
Sabra02G0033000 Salix brachista HOM05D004553 ORTHO05D005426 8.7e-102 374.4 312 64.7
MSTRG.3646 Avicennia marina HOM05D004553 ORTHO05D005426 1.9e-101 373.2 303 69.0
unitig_8.g3887 Utricularia gibba HOM05D004553 ORTHO05D005426 1.9e-101 373.2 303 75.6
arahy.Tifrunner.gnm1.ann1.59X69N Arachis hypogaea HOM05D004553 ORTHO05D005426 9.6e-101 370.9 304 70.4
arahy.Tifrunner.gnm1.ann1.6P10V3 Arachis hypogaea HOM05D004553 ORTHO05D005426 1.3e-100 370.5 304 69.7
Eucgr.K03287 Eucalyptus grandis HOM05D004553 ORTHO05D005426 1.6e-100 370.2 304 67.4
PSO832G2284 Papaver somniferum HOM05D004553 ORTHO05D005426 1.6e-100 370.2 302 73.8
Peaxi162Scf00324g00032 Petunia axillaris HOM05D004553 ORTHO05D005426 3.7e-100 369.0 303 65.3
Psat0s2295g0120 Pisum sativum HOM05D004553 ORTHO05D005426 4.8e-100 368.6 301 71.4
arahy.Tifrunner.gnm1.ann1.1I5KFR Arachis hypogaea HOM05D004553 ORTHO05D005426 8.2e-100 367.9 304 68.8
Lsat_1_v5_gn_9_9101 Lactuca sativa HOM05D004553 ORTHO05D005426 8.2e-100 367.9 304 65.5
PSO675G7515 Papaver somniferum HOM05D004553 ORTHO05D005426 2.4e-99 366.3 302 65.2
Oeu025823.1 Olea europaea HOM05D004553 ORTHO05D005426 3.1e-99 365.9 313 67.7
SGA_v2.0_scaffold31G12652 Striga asiatica HOM05D004553 ORTHO05D005426 1.5e-98 363.6 315 65.1
ATR0794G102 Amborella trichopoda HOM05D004553 ORTHO05D005426 2.6e-98 362.8 300 68.3
PSO541G5588 Papaver somniferum HOM05D004553 ORTHO05D005426 3.4e-98 362.5 302 68.5
Cc03_g10870 Coffea canephora HOM05D004553 ORTHO05D005426 7.6e-98 361.3 302 65.6
Lj1A269G34 Lonicera japonica HOM05D004553 ORTHO05D005426 2.5e-96 356.3 296 64.5
Os12g0626100 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 4.2e-96 355.5 306 62.4
DCAR_012530 Daucus carota HOM05D004553 ORTHO05D005426 1.6e-95 353.6 305 63.6
DCAR_009311 Daucus carota HOM05D004553 ORTHO05D005426 1.3e-94 350.5 296 65.2
vmacro03822 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 3.9e-94 349.0 333 58.9
SalBow6G2244 Salvia bowleyana HOM05D004553 ORTHO05D005426 1.4e-91 340.5 304 67.8
Os12g0163300 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 7.7e-90 334.7 316 59.2
TWI18G0975 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 1.9e-88 330.1 288 63.2
Thecc.01G262600 Theobroma cacao HOM05D004553 ORTHO05D005426 4.8e-84 315.5 244 66.8
Zm00001eb259150 Zea mays HOM05D004553 ORTHO05D005426 1.2e-82 310.8 302 58.9
CARHR168560 Cardamine hirsuta HOM05D004553 ORTHO05D005426 2.9e-81 306.2 216 86.1
HPP92_007745 Vanilla planifolia HOM05D004553 ORTHO05D005426 3.3e-77 292.7 301 55.8
Sc05g0000780 Simmondsia chinensis HOM05D004553 ORTHO05D005426 1.4e-75 287.3 213 71.8
ECA247G2484 Erigeron canadensis HOM05D004553 ORTHO05D005426 2.4e-75 286.6 240 62.9
vmacro06125 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 4.1e-75 285.8 311 55.6
vmacro02641 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 7.0e-75 285.0 301 58.8
AagrBONN_evm.TU.Sc2ySwM_228.3863 Anthoceros agrestis HOM05D004553 ORTHO05D005426 1.8e-67 260.4 299 59.9
AagrBONN_evm.TU.Sc2ySwM_117.1472 Anthoceros agrestis HOM05D004553 ORTHO05D005426 2.7e-66 256.5 299 58.2
Pp3c11_17490 Physcomitrium patens HOM05D004553 ORTHO05D005426 5.2e-62 242.3 317 53.6
Mapoly0065s0014 Marchantia polymorpha HOM05D004553 ORTHO05D005426 1.8e-59 233.8 239 62.3
Glyma.19G162800 Glycine max HOM05D001448 ORTHO05D005781 3.1e-59 233.0 216 61.6
SMO304G0012 Selaginella moellendorffii HOM05D004553 ORTHO05D005426 1.5e-56 224.2 297 56.2
Cre10.g435550 Chlamydomonas reinhardtii HOM05D004553 ORTHO05D005426 5.5e-56 222.2 303 51.2
CBR_g46193 Chara braunii HOM05D004553 ORTHO05D005426 4.7e-47 192.6 316 43.7
HPP92_007825 Vanilla planifolia HOM05D004553 ORTHO05D005426 3.0e-46 189.9 258 47.3
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 4.9e-44 182.6 198 53.5
BcaC01g01031 Brassica carinata HOM05D004553 ORTHO05D005426 3.9e-41 172.9 175 60.6
C03p87400 Brassica napus HOM05D004553 ORTHO05D005426 3.9e-41 172.9 175 60.6
BolC3t21049H Brassica oleracea HOM05D004553 ORTHO05D005426 3.9e-41 172.9 175 60.6
MCO15G119 Micromonas commoda HOM05D004553 ORTHO05D005426 3.6e-39 166.4 320 38.1
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 4.7e-39 166.0 299 42.5
Haze_27369 Corylus avellana HOM05D004553 ORTHO05D005426 6.8e-38 162.2 291 36.8
SEGI_33857 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 3.5e-34 149.8 129 62.0
Psat0s2087g0120 Pisum sativum HOM05D004553 ORTHO05D005426 6.0e-34 149.1 128 60.9
CDE04G1470 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 3.9e-33 146.4 126 60.3
Nn1g02691 Nelumbo nucifera HOM05D004553 ORTHO05D005426 6.2e-31 139.0 84 81.0
SEGI_01794 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 2.9e-28 130.2 103 68.0
AT3G62530 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 1.6e-26 124.4 163 42.3
CARHR168550 Cardamine hirsuta HOM05D004553 ORTHO05D005426 6.0e-26 122.5 77 85.7
Oeu058648.1 Olea europaea HOM05D004553 ORTHO05D005426 2.1e-23 114.0 133 47.4
CDE04G0333 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 8.1e-23 112.1 69 81.2
SHI26037 Sapria himalayana HOM05D004553 ORTHO05D000023 1.2e-21 108.2 164 40.9
Psat0s2088g0080 Pisum sativum HOM05D004553 ORTHO05D005426 7.6e-21 105.5 67 77.6
Oeu044898.1 Olea europaea HOM05D004553 ORTHO05D005426 1.3e-20 104.8 232 34.9
AagrBONN_evm.TU.Sc2ySwM_228.2479 Anthoceros agrestis HOM05D004553 ORTHO05D005426 1.2e-18 98.2 175 44.0
FvH4_2g19410 Fragaria vesca HOM05D004553 ORTHO05D005426 3.3e-16 90.1 65 70.8
Oeu016862.1 Olea europaea HOM05D004553 ORTHO05D005426 6.2e-15 85.9 82 57.3
CAN.G159.14 Capsicum annuum HOM05D004553 ORTHO05D005426 1.8e-14 84.3 71 60.6
CAN.G795.4 Capsicum annuum HOM05D004553 ORTHO05D005426 2.6e-13 80.5 71 57.7
Oeu041828.1 Olea europaea HOM05D004553 ORTHO05D005426 6.4e-12 75.9 78 47.4
Nitab4.5_0002915g0080 Nicotiana tabacum HOM05D000693 ORTHO05D001102 3.0e-09 67.0 112 38.4
CAN.G907.20 Capsicum annuum HOM05D004553 ORTHO05D005426 9.6e-08 62.0 40 72.5
Nitab4.5_0002915g0090 Nicotiana tabacum HOM05D004553 ORTHO05D005426 8.1e-07 58.9 95 37.9


User provided reference genes

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