Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40246 Brassica carinata HOM05D007176 ORTHO05D009050 5.9e-168 594.3 354 100.0
A09p51090 Brassica napus HOM05D007176 ORTHO05D009050 3.5e-160 568.5 378 91.5
C08p33910 Brassica napus HOM05D007176 ORTHO05D009050 1.2e-157 560.1 354 95.8
Aa31LG10G13110 Aethionema arabicum HOM05D007176 ORTHO05D009050 4.7e-141 505.0 354 87.6
Sp5g04340 Schrenkiella parvula HOM05D007176 ORTHO05D009050 4.3e-134 481.9 354 81.9
CARHR168930 Cardamine hirsuta HOM05D007176 ORTHO05D009050 4.0e-132 475.3 354 83.3
THA.LOC104802720 Tarenaya hassleriana HOM05D007176 ORTHO05D009050 7.8e-128 461.1 355 78.3
BolC8t50987H Brassica oleracea HOM05D000032 ORTHO05D001620 8.1e-125 451.1 277 100.0
AL5G40300 Arabidopsis lyrata HOM05D007176 ORTHO05D009050 5.4e-121 438.3 354 79.9
Gohir.A04G053500 Gossypium hirsutum HOM05D007176 ORTHO05D009050 5.6e-118 428.3 347 75.2
Thhalv10006065m.g Eutrema salsugineum HOM05D007176 ORTHO05D009050 2.8e-117 426.0 354 78.5
Thecc.05G178200 Theobroma cacao HOM05D007176 ORTHO05D009050 2.4e-116 422.9 347 70.6
Duzib106G0399 Durio zibethinus HOM05D007176 ORTHO05D009050 3.1e-116 422.5 347 72.0
Carub.0005s2528 Capsella rubella HOM05D007176 ORTHO05D009050 5.8e-115 418.3 354 78.0
Dinv16365 Davidia involucrata HOM05D007176 ORTHO05D009050 3.8e-114 415.6 354 71.2
AT3G58530 Arabidopsis thaliana HOM05D007176 ORTHO05D009050 1.9e-113 413.3 354 77.1
RcHm_v2.0_Chr3g0478871 Rosa chinensis HOM05D007176 ORTHO05D009050 4.2e-113 412.1 345 73.3
BraA09t40553Z Brassica rapa HOM05D000032 ORTHO05D001620 9.0e-108 394.4 278 89.9
Cfa020128 Carpinus fangiana HOM05D007176 ORTHO05D009050 1.2e-107 394.0 357 59.1
Manes.09G039600 Manihot esculenta HOM05D007176 ORTHO05D009050 3.2e-105 386.0 354 71.2
MD14G1051600 Malus domestica HOM05D007176 ORTHO05D009050 3.9e-103 379.0 355 68.5
Nn2g15783 Nelumbo nucifera HOM05D007176 ORTHO05D009050 5.1e-103 378.6 348 69.0
TAR633G1141 Trochodendron aralioides HOM05D007176 ORTHO05D009050 1.9e-102 376.7 354 70.1
FvH4_6g21620 Fragaria vesca HOM05D007176 ORTHO05D009050 2.5e-102 376.3 345 71.3
FAN02G0922 Fragaria x ananassa HOM05D007176 ORTHO05D009050 2.5e-102 376.3 345 71.3
TAR633G0683 Trochodendron aralioides HOM05D007176 ORTHO05D009050 2.2e-101 373.2 354 69.5
FAN14G2546 Fragaria x ananassa HOM05D007176 ORTHO05D009050 2.8e-101 372.9 345 70.7
FAN09G2372 Fragaria x ananassa HOM05D007176 ORTHO05D009050 6.3e-101 371.7 345 70.4
Hma1.2p1_0645F.1_g194890 Hydrangea macrophylla HOM05D007176 ORTHO05D009050 1.8e-100 370.2 347 70.3
QL07p025011 Quercus lobata HOM05D007176 ORTHO05D009050 2.4e-100 369.8 345 69.6
CiPaw.09G027300 Carya illinoinensis HOM05D007176 ORTHO05D009050 1.2e-99 367.5 346 69.9
Lju124C23T17 Lonicera japonica HOM05D007176 ORTHO05D009050 1.2e-99 367.5 332 72.9
Migut.K00028 Erythranthe guttata HOM05D007176 ORTHO05D009050 1.5e-99 367.1 354 69.2
GSVIVG01033441001 Vitis vinifera HOM05D007176 ORTHO05D009050 4.5e-99 365.5 332 72.9
FAN05G5781 Fragaria x ananassa HOM05D007176 ORTHO05D009050 2.2e-98 363.2 351 69.5
Eucgr.K01865 Eucalyptus grandis HOM05D007176 ORTHO05D009050 2.9e-98 362.8 347 69.2
arahy.Tifrunner.gnm1.ann1.5B5G66 Arachis hypogaea HOM05D007176 ORTHO05D009050 2.7e-96 356.3 361 67.0
Lj5g0009846 Lotus japonicus HOM05D007176 ORTHO05D009050 7.9e-96 354.8 349 69.1
Prupe.7G084400 Prunus persica HOM05D007176 ORTHO05D009050 2.5e-94 349.7 354 67.2
ECA247G1245 Erigeron canadensis HOM05D007176 ORTHO05D009050 4.3e-94 349.0 346 67.6
HanXRQChr10g0300591 Helianthus annuus HOM05D007176 ORTHO05D009050 5.7e-94 348.6 348 68.7
EL10Ac3g06857 Beta vulgaris HOM05D007176 ORTHO05D009050 1.7e-93 347.1 358 65.6
arahy.Tifrunner.gnm1.ann1.I5CDLA Arachis hypogaea HOM05D007176 ORTHO05D009050 1.8e-92 343.6 371 64.7
CANSAT64G0938 Cannabis sativa HOM05D007176 ORTHO05D009050 1.5e-91 340.5 349 65.9
Sopen06g001340 Solanum pennellii HOM05D007176 ORTHO05D009050 4.5e-91 339.0 344 66.6
Potri.006G195800 Populus trichocarpa HOM05D007176 ORTHO05D009050 5.0e-90 335.5 341 66.6
MBI01_g44281_MAGBIO Magnolia biondii HOM05D007176 ORTHO05D009050 6.5e-90 335.1 337 54.9
Cpa.g.sc85.35 Carica papaya HOM05D007176 ORTHO05D009050 1.4e-89 334.0 346 67.6
MD12G1053200 Malus domestica HOM05D007176 ORTHO05D009050 3.2e-89 332.8 356 65.7
COL.COLO4_29390 Corchorus olitorius HOM05D007176 ORTHO05D009050 4.2e-89 332.4 331 65.9
CDE04G3485 Ceratophyllum demersum HOM05D007176 ORTHO05D009050 7.2e-89 331.6 353 64.6
Sc13g0002490 Simmondsia chinensis HOM05D007176 ORTHO05D009050 7.9e-88 328.2 353 63.5
PGR142G3952 Punica granatum HOM05D007176 ORTHO05D009050 1.0e-87 327.8 353 64.9
DCAR_019856 Daucus carota HOM05D007176 ORTHO05D009050 1.1e-86 324.3 335 54.3
Rhsim04G0094400 Rhododendron simsii HOM05D007176 ORTHO05D009050 2.0e-86 323.6 353 64.0
BcaC02g10014 Brassica carinata HOM05D007176 ORTHO05D009050 1.3e-85 320.9 297 75.1
Gohir.D04G094700 Gossypium hirsutum HOM05D007176 ORTHO05D009050 1.1e-84 317.8 277 72.9
CSS0044198 Camellia sinensis var. sinensis HOM05D007176 ORTHO05D009050 5.3e-84 315.5 348 64.9
vmacro22113 Vaccinium macrocarpon HOM05D007176 ORTHO05D009050 5.3e-84 315.5 387 48.1
Sabra06G0150500 Salix brachista HOM05D007176 ORTHO05D009050 9.1e-84 314.7 355 62.3
TPR.G19346 Trifolium pratense HOM05D007176 ORTHO05D009050 1.2e-83 314.3 377 60.5
Haze_20048 Corylus avellana HOM05D007176 ORTHO05D009050 2.0e-83 313.5 381 48.6
Haze_20055 Corylus avellana HOM05D007176 ORTHO05D009050 2.0e-83 313.5 381 48.6
Gorai.009G392400 Gossypium raimondii HOM05D007176 ORTHO05D009050 2.9e-82 309.7 323 65.9
SalBow1G6257 Salvia bowleyana HOM05D007176 ORTHO05D009050 6.1e-80 302.0 362 59.9
Actinidia17284 Actinidia chinensis HOM05D007176 ORTHO05D009050 4.8e-77 292.4 352 56.0
Os02g0281150 Oryza sativa ssp. japonica HOM05D007176 ORTHO05D009050 1.8e-76 290.4 344 59.6
Medtr1g054625 Medicago truncatula HOM05D007176 ORTHO05D009050 4.1e-76 289.3 352 61.1
Cc06_g15630 Coffea canephora HOM05D007176 ORTHO05D009050 7.0e-76 288.5 350 61.1
BolC4t24963H Brassica oleracea HOM05D000032 ORTHO05D001620 9.1e-76 288.1 277 74.4
PGSC0003DMG400029168 Solanum tuberosum HOM05D007176 ORTHO05D009050 1.6e-75 287.3 344 61.0
Lsat_1_v5_gn_9_26900 Lactuca sativa HOM05D007176 ORTHO05D009050 2.6e-75 286.6 347 53.9
Peaxi162Scf00258g00925 Petunia axillaris HOM05D007176 ORTHO05D009050 7.7e-75 285.0 350 59.7
CAN.G111.5 Capsicum annuum HOM05D007176 ORTHO05D009050 2.9e-74 283.1 344 59.9
Solyc06g005380.3 Solanum lycopersicum HOM05D007176 ORTHO05D009050 8.5e-74 281.6 344 60.2
C04p33960 Brassica napus HOM05D007176 ORTHO05D009050 1.5e-73 280.8 277 73.3
PSO675G7508 Papaver somniferum HOM05D007176 ORTHO05D009050 1.5e-73 280.8 293 68.6
CSS0035640 Camellia sinensis var. sinensis HOM05D007176 ORTHO05D009050 7.2e-73 278.5 348 61.2
Lalb_Chr02g0153821 Lupinus albus HOM05D007176 ORTHO05D009050 1.8e-71 273.9 356 58.1
Hma1.2p1_0645F.1_g194900 Hydrangea macrophylla HOM05D007176 ORTHO05D009050 2.3e-71 273.5 289 67.8
Glyma.09G105500 Glycine max HOM05D007176 ORTHO05D009050 4.0e-71 272.7 351 58.7
PSO541G4948 Papaver somniferum HOM05D007176 ORTHO05D009050 6.7e-71 271.9 293 67.2
AUR62032747 Chenopodium quinoa HOM05D007176 ORTHO05D009050 2.0e-70 270.4 333 60.4
Ca_03573_v3 Cicer arietinum L. HOM05D007176 ORTHO05D009050 2.6e-70 270.0 357 57.4
Nitab4.5_0008255g0020 Nicotiana tabacum HOM05D007176 ORTHO05D009050 2.6e-70 270.0 355 43.9
Atru.BG.213.p Acer truncatum HOM05D007176 ORTHO05D009050 4.8e-69 265.8 342 61.4
VMungo0720G0788 Vigna mungo HOM05D007176 ORTHO05D009050 4.5e-67 259.2 402 44.0
Ah.13g075580 Amaranthus hybridus HOM05D007176 ORTHO05D009050 4.2e-65 252.7 289 64.0
Aqoxy279s002 Aquilegia oxysepala HOM05D007176 ORTHO05D009050 3.6e-64 249.6 348 57.2
Aqoxy2G00051 Aquilegia oxysepala HOM05D007176 ORTHO05D009050 3.6e-64 249.6 348 57.2
HPP92_010126 Vanilla planifolia HOM05D007176 ORTHO05D009050 9.8e-62 241.5 286 63.6
Zm00001eb237210 Zea mays HOM05D007176 ORTHO05D009050 1.7e-61 240.7 344 54.7
A04p02540 Brassica napus HOM05D000032 ORTHO05D001620 2.7e-59 233.4 277 55.6
SMO118G0524 Selaginella moellendorffii HOM05D007176 ORTHO05D009050 5.0e-58 229.2 339 50.7
SGA_v2.0_scaffold274G46490 Striga asiatica HOM05D007176 ORTHO05D009050 1.5e-57 227.6 163 66.3
Ciclev10012430m.g Citrus clementina HOM05D007176 ORTHO05D009050 9.5e-57 224.9 175 65.7
SEGI_09769 Sequoiadendron giganteum HOM05D007176 ORTHO05D009050 3.0e-55 219.9 288 61.5
Nitab4.5_0000009g0020 Nicotiana tabacum HOM05D007176 ORTHO05D009050 2.3e-50 203.8 424 34.0
unitig_736.g22301 Utricularia gibba HOM05D007176 ORTHO05D009050 5.0e-50 202.6 409 47.4
Pp3c23_2930 Physcomitrium patens HOM05D007176 ORTHO05D009050 2.5e-49 200.3 347 44.7
Psat6g088000 Pisum sativum HOM05D007176 ORTHO05D009050 1.0e-47 194.9 296 56.4
AagrBONN_evm.TU.Sc2ySwM_228.1251 Anthoceros agrestis HOM05D007176 ORTHO05D009050 3.9e-42 176.4 348 44.0
Hund24823 Selenicereus undatus HOM05D007176 ORTHO05D009050 1.5e-41 174.5 122 67.2
Phvul.007G261900 Phaseolus vulgaris HOM05D007176 ORTHO05D009050 3.3e-41 173.3 291 54.3
Atru.chr8.1185 Acer truncatum HOM05D007176 ORTHO05D009050 6.2e-40 169.1 258 60.1
ATR0001G043 Amborella trichopoda HOM05D007176 ORTHO05D009050 5.4e-36 156.0 268 47.0
HanXRQChr05g0140621 Helianthus annuus HOM05D007176 ORTHO05D009050 1.2e-35 154.8 210 52.9
arahy.Tifrunner.gnm1.ann1.0S64XP Arachis hypogaea HOM05D007176 ORTHO05D009050 1.6e-35 154.5 288 40.6
HanXRQChr10g0316231 Helianthus annuus HOM05D007176 ORTHO05D009050 3.5e-35 153.3 210 52.4
PRCOL_00005880 Prasinoderma coloniale HOM05D007176 ORTHO05D009050 8.9e-31 138.7 273 33.7
Hund24819 Selenicereus undatus HOM05D007176 ORTHO05D001610 8.9e-31 138.7 128 56.2
Mapoly0209s0007 Marchantia polymorpha HOM05D007176 ORTHO05D009050 1.0e-26 125.2 131 48.9
AUR62015309 Chenopodium quinoa HOM05D007176 ORTHO05D009050 2.8e-24 117.1 110 55.5
Sopen07g021250 Solanum pennellii HOM05D003317 ORTHO05D003696 3.9e-10 70.1 244 25.4
PGSC0003DMG400013008 Solanum tuberosum HOM05D003317 ORTHO05D003696 6.6e-10 69.3 244 25.4
AUR62028939 Chenopodium quinoa HOM05D003317 ORTHO05D003696 1.5e-09 68.2 306 21.9
CAN.G498.3 Capsicum annuum HOM05D003317 ORTHO05D003696 3.6e-08 63.5 241 24.1
CAN.G63.8 Capsicum annuum HOM05D003317 ORTHO05D003696 4.8e-08 63.2 241 24.1
Oeu063419.1 Olea europaea HOM05D003317 ORTHO05D003696 4.8e-08 63.2 247 24.3
Ah.09g231590 Amaranthus hybridus HOM05D003317 ORTHO05D003696 6.2e-08 62.8 203 25.6
AUR62025246 Chenopodium quinoa HOM05D003317 ORTHO05D003696 6.2e-08 62.8 234 22.6
Hund08778 Selenicereus undatus HOM05D003317 ORTHO05D003696 1.4e-07 61.6 250 23.2
HanXRQChr10g0281201 Helianthus annuus HOM05D005998 ORTHO05D007664 1.8e-07 61.2 84 40.5
SEGI_38686 Sequoiadendron giganteum HOM05D002813 ORTHO05D003203 4.0e-07 60.1 296 22.3
Duzib168G1355 Durio zibethinus HOM05D003317 ORTHO05D003696 6.9e-07 59.3 237 31.2
FAN27G2003 Fragaria x ananassa HOM05D002813 ORTHO05D003203 6.9e-07 59.3 103 40.8
Gohir.A05G046700 Gossypium hirsutum HOM05D002813 ORTHO05D003203 9.0e-07 58.9 293 22.9
Sc21g0004980 Simmondsia chinensis HOM05D002125 ORTHO05D002105 9.0e-07 58.9 285 24.9
CAN.G955.3 Capsicum annuum HOM05D002125 ORTHO05D002105 1.2e-06 58.5 264 24.2
Os08g0459100 Oryza sativa ssp. japonica HOM05D003317 ORTHO05D003696 2.0e-06 57.8 248 22.6
Gohir.A07G019500 Gossypium hirsutum HOM05D003317 ORTHO05D003696 2.6e-06 57.4 265 23.8
Lsat_1_v5_gn_7_35060 Lactuca sativa HOM05D003317 ORTHO05D003696 2.6e-06 57.4 250 22.4
Actinidia29062 Actinidia chinensis HOM05D002125 ORTHO05D002105 3.4e-06 57.0 220 24.1
Eucgr.K02937 Eucalyptus grandis HOM05D002125 ORTHO05D002105 3.4e-06 57.0 220 25.5
Gohir.D05G048500 Gossypium hirsutum HOM05D002813 ORTHO05D003203 3.4e-06 57.0 345 20.9
Manes.03G053200 Manihot esculenta HOM05D003317 ORTHO05D003696 3.4e-06 57.0 244 21.7
Nn4g26135 Nelumbo nucifera HOM05D002762 ORTHO05D004643 3.4e-06 57.0 112 36.6
Oeu018029.1 Olea europaea HOM05D003317 ORTHO05D003696 3.4e-06 57.0 246 23.2
Potri.006G220600 Populus trichocarpa HOM05D003317 ORTHO05D003696 3.4e-06 57.0 248 22.6
EL10Ac8g19064 Beta vulgaris HOM05D003317 ORTHO05D003696 4.5e-06 56.6 250 21.6
Ciclev10004705m.g Citrus clementina HOM05D002762 ORTHO05D004643 5.8e-06 56.2 87 40.2
Gorai.009G049800 Gossypium raimondii HOM05D002813 ORTHO05D003203 5.8e-06 56.2 345 20.6
Mapoly0100s0050 Marchantia polymorpha HOM05D002813 ORTHO05D003203 5.8e-06 56.2 272 22.8
Nitab4.5_0003794g0040 Nicotiana tabacum HOM05D002813 ORTHO05D003203 9.9e-06 55.5 232 22.8


User provided reference genes

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