Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40233 Brassica carinata HOM05D004471 ORTHO05D005345 3.6e-97 358.2 176 100.0
A05p42590 Brassica napus HOM05D004471 ORTHO05D005345 2.4e-93 345.5 169 99.4
C05p62270 Brassica napus HOM05D004471 ORTHO05D005345 2.4e-93 345.5 169 99.4
BolC5t34882H Brassica oleracea HOM05D004471 ORTHO05D005345 1.0e-91 340.1 167 99.4
BraA05t22994Z Brassica rapa HOM05D004471 ORTHO05D005345 2.2e-91 339.0 167 98.8
Thhalv10021604m.g Eutrema salsugineum HOM05D004471 ORTHO05D005345 3.8e-91 338.2 167 98.8
AL3G15090 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 9.4e-90 333.6 167 97.6
Sp3g03820 Schrenkiella parvula HOM05D004471 ORTHO05D005345 9.4e-90 333.6 167 97.0
Carub.0003s0423 Capsella rubella HOM05D004471 ORTHO05D005345 1.2e-89 333.2 167 97.6
AT3G05000 Arabidopsis thaliana HOM05D004471 ORTHO05D005345 2.1e-89 332.4 167 97.0
Aa31LG5G15450 Aethionema arabicum HOM05D004471 ORTHO05D005345 3.0e-88 328.6 168 94.6
CARHR079310 Cardamine hirsuta HOM05D004471 ORTHO05D005345 5.2e-88 327.8 168 96.4
BcaC05g29981 Brassica carinata HOM05D004471 ORTHO05D005345 9.1e-85 317.0 155 99.4
BcaC05g29980 Brassica carinata HOM05D004471 ORTHO05D005345 2.6e-84 315.5 155 98.7
THA.LOC104818664 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 3.3e-79 298.5 169 88.2
THA.LOC104821699 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 3.3e-79 298.5 167 86.8
Phvul.006G096500 Phaseolus vulgaris HOM05D004471 ORTHO05D005345 1.8e-77 292.7 168 83.3
Glyma.19G240000 Glycine max HOM05D004471 ORTHO05D005345 2.7e-76 288.9 170 83.5
Lj2g0025202 Lotus japonicus HOM05D004471 ORTHO05D005345 1.7e-75 286.2 170 82.4
Atru.chr2.617 Acer truncatum HOM05D004471 ORTHO05D005345 2.2e-75 285.8 167 83.2
EL10Ac4g09248 Beta vulgaris HOM05D004471 ORTHO05D005345 2.2e-75 285.8 169 80.5
Glyma.03G242500 Glycine max HOM05D004471 ORTHO05D005345 2.2e-75 285.8 170 81.8
MELO3C015368.2 Cucumis melo HOM05D004471 ORTHO05D005345 2.9e-75 285.4 167 82.0
Medtr7g114210 Medicago truncatula HOM05D004471 ORTHO05D005345 3.8e-75 285.0 170 82.9
VMungo0540G0886 Vigna mungo HOM05D004471 ORTHO05D005345 3.8e-75 285.0 170 81.2
ClCG03G016550 Citrullus lanatus HOM05D004471 ORTHO05D005345 5.0e-75 284.6 167 81.4
arahy.Tifrunner.gnm1.ann1.9WIB0A Arachis hypogaea HOM05D004471 ORTHO05D005345 8.5e-75 283.9 173 79.2
Potri.013G031000 Populus trichocarpa HOM05D004471 ORTHO05D005345 1.5e-74 283.1 167 82.0
TWI12G0951 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 1.9e-74 282.7 169 79.9
Actinidia05746 Actinidia chinensis HOM05D004471 ORTHO05D005345 2.5e-74 282.3 169 79.9
TPR.G6943 Trifolium pratense HOM05D004471 ORTHO05D005345 3.2e-74 282.0 170 81.8
Ca_09388_v3 Cicer arietinum L. HOM05D004471 ORTHO05D005345 4.2e-74 281.6 170 81.8
TWI56G0886 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 4.2e-74 281.6 169 79.9
Lsat_1_v5_gn_5_112921 Lactuca sativa HOM05D004471 ORTHO05D005345 9.4e-74 280.4 169 80.5
GSVIVG01021973001 Vitis vinifera HOM05D004471 ORTHO05D005345 9.4e-74 280.4 169 81.1
Sed0002921 Sechium edule HOM05D004471 ORTHO05D005345 2.1e-73 279.3 167 79.6
vmacro19660 Vaccinium macrocarpon HOM05D004471 ORTHO05D005345 2.7e-73 278.9 165 82.4
Sabra13G0030200 Salix brachista HOM05D004471 ORTHO05D005345 4.7e-73 278.1 163 82.8
CsaV3_1G039430 Cucumis sativus L. HOM05D004471 ORTHO05D005345 6.1e-73 277.7 172 79.1
Dinv26586 Davidia involucrata HOM05D004471 ORTHO05D005345 6.1e-73 277.7 169 78.7
Nitab4.5_0002323g0100 Nicotiana tabacum HOM05D004471 ORTHO05D005345 6.1e-73 277.7 169 78.1
Nitab4.5_0007843g0010 Nicotiana tabacum HOM05D004471 ORTHO05D005345 6.1e-73 277.7 169 78.1
CiPaw.07G011400 Carya illinoinensis HOM05D004471 ORTHO05D005345 8.0e-73 277.3 170 80.6
Eucgr.B01762 Eucalyptus grandis HOM05D004471 ORTHO05D005345 8.0e-73 277.3 167 80.8
PSO063G3713 Papaver somniferum HOM05D004471 ORTHO05D005345 8.0e-73 277.3 172 77.9
Ciclev10002639m.g Citrus clementina HOM05D004471 ORTHO05D005345 1.4e-72 276.6 167 80.2
PSO170G4164 Papaver somniferum HOM05D004471 ORTHO05D005345 1.4e-72 276.6 172 77.3
PGR031G3800 Punica granatum HOM05D004471 ORTHO05D005345 1.4e-72 276.6 167 80.8
Hund07017 Selenicereus undatus HOM05D004471 ORTHO05D005345 1.8e-72 276.2 167 79.0
CSS0025209 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 2.3e-72 275.8 169 78.1
Solyc04g072410.3 Solanum lycopersicum HOM05D004471 ORTHO05D005345 4.0e-72 275.0 169 77.5
Sopen04g028580 Solanum pennellii HOM05D004471 ORTHO05D005345 4.0e-72 275.0 169 77.5
PGSC0003DMG400027544 Solanum tuberosum HOM05D004471 ORTHO05D005345 4.0e-72 275.0 169 77.5
Cc02_g32300 Coffea canephora HOM05D004471 ORTHO05D005345 5.2e-72 274.6 169 77.5
Rhsim05G0148100 Rhododendron simsii HOM05D004471 ORTHO05D005345 6.8e-72 274.2 165 81.8
CAN.G617.9 Capsicum annuum HOM05D004471 ORTHO05D005345 8.8e-72 273.9 169 76.9
Gorai.007G263500 Gossypium raimondii HOM05D004471 ORTHO05D005345 8.8e-72 273.9 168 79.2
QL03p002667 Quercus lobata HOM05D004471 ORTHO05D005345 8.8e-72 273.9 168 78.0
Sc09g0003490 Simmondsia chinensis HOM05D004471 ORTHO05D005345 8.8e-72 273.9 170 77.1
Haze_04280 Corylus avellana HOM05D004471 ORTHO05D005345 2.0e-71 272.7 166 80.1
Peaxi162Scf00071g00744 Petunia axillaris HOM05D004471 ORTHO05D005345 2.0e-71 272.7 169 77.5
Gohir.A11G236600 Gossypium hirsutum HOM05D004471 ORTHO05D005345 2.6e-71 272.3 168 78.6
Gohir.D11G247200 Gossypium hirsutum HOM05D004471 ORTHO05D005345 2.6e-71 272.3 168 78.6
Duzib177G1077 Durio zibethinus HOM05D004471 ORTHO05D005345 3.4e-71 271.9 168 79.2
Ah.06g192940 Amaranthus hybridus HOM05D004471 ORTHO05D005345 4.4e-71 271.6 166 78.9
Manes.09G160500 Manihot esculenta HOM05D004471 ORTHO05D005345 4.4e-71 271.6 169 77.5
TAR629G0585 Trochodendron aralioides HOM05D004471 ORTHO05D005345 5.7e-71 271.2 170 77.6
Lj9A676G54 Lonicera japonica HOM05D004471 ORTHO05D005345 7.5e-71 270.8 171 76.6
Os09g0244900 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 9.8e-71 270.4 170 78.8
Thecc.05G251800 Theobroma cacao HOM05D004471 ORTHO05D005345 9.8e-71 270.4 168 78.6
AUR62005042 Chenopodium quinoa HOM05D004471 ORTHO05D005345 1.3e-70 270.0 169 76.3
Lalb_Chr18g0045321 Lupinus albus HOM05D004471 ORTHO05D005345 1.3e-70 270.0 171 76.0
Aqoxy5G00550 Aquilegia oxysepala HOM05D004471 ORTHO05D005345 2.2e-70 269.2 168 78.0
AUR62000928 Chenopodium quinoa HOM05D004471 ORTHO05D005345 2.2e-70 269.2 166 77.7
Ah.04g160020 Amaranthus hybridus HOM05D003164 ORTHO05D003575 4.8e-70 268.1 177 76.8
DCAR_003298 Daucus carota HOM05D004471 ORTHO05D005345 4.8e-70 268.1 174 76.4
Oeu053263.1 Olea europaea HOM05D004471 ORTHO05D005345 1.4e-69 266.5 168 75.0
Hund21668 Selenicereus undatus HOM05D004471 ORTHO05D005345 1.4e-69 266.5 169 75.7
Migut.I00591 Erythranthe guttata HOM05D004471 ORTHO05D005345 9.1e-69 263.8 169 72.8
Duzib106G0566 Durio zibethinus HOM05D004471 ORTHO05D005345 1.6e-68 263.1 168 76.8
Os07g0291100 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 1.6e-68 263.1 169 76.9
Lalb_Chr02g0148511 Lupinus albus HOM05D004471 ORTHO05D005345 2.0e-68 262.7 170 75.3
Nn5g28667 Nelumbo nucifera HOM05D004471 ORTHO05D005345 2.0e-68 262.7 166 75.9
HanXRQChr10g0301731 Helianthus annuus HOM05D004471 ORTHO05D005345 2.7e-68 262.3 167 76.6
Gohir.D13G104100 Gossypium hirsutum HOM05D004471 ORTHO05D005345 3.5e-68 261.9 168 77.4
HanXRQChr14g0442561 Helianthus annuus HOM05D004471 ORTHO05D005345 4.5e-68 261.5 167 75.4
Oeu041531.1 Olea europaea HOM05D004471 ORTHO05D005345 4.5e-68 261.5 172 72.1
Potri.005G044300 Populus trichocarpa HOM05D004471 ORTHO05D005345 4.5e-68 261.5 168 78.0
SalBow3G0010 Salvia bowleyana HOM05D004471 ORTHO05D005345 5.9e-68 261.2 165 76.4
SGA_v2.0_scaffold143G35756 Striga asiatica HOM05D004471 ORTHO05D005345 5.9e-68 261.2 169 72.8
Sabra05G0041100 Salix brachista HOM05D004471 ORTHO05D005345 7.7e-68 260.8 168 76.2
FAN02G0766 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.0e-67 260.4 170 73.5
FAN05G4093 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.3e-67 260.0 170 73.5
FAN14G3038 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.3e-67 260.0 170 73.5
Gohir.A13G100500 Gossypium hirsutum HOM05D004471 ORTHO05D005345 1.3e-67 260.0 168 76.2
HanXRQChr03g0072361 Helianthus annuus HOM05D004471 ORTHO05D005345 1.3e-67 260.0 167 75.4
Zm00001eb421350 Zea mays HOM05D004471 ORTHO05D005345 1.3e-67 260.0 165 75.2
Nn1g09147 Nelumbo nucifera HOM05D004471 ORTHO05D005345 1.7e-67 259.6 166 74.7
FvH4_6g04260 Fragaria vesca HOM05D004471 ORTHO05D005345 2.3e-67 259.2 170 72.9
FAN09G1403 Fragaria x ananassa HOM05D004471 ORTHO05D005345 2.3e-67 259.2 170 72.9
MSTRG.11237 Avicennia marina HOM05D004471 ORTHO05D005345 2.9e-67 258.8 169 72.2
Cfa006506 Carpinus fangiana HOM05D004471 ORTHO05D005345 2.9e-67 258.8 154 81.2
Lalb_Chr06g0167871 Lupinus albus HOM05D004471 ORTHO05D005345 3.8e-67 258.5 170 73.5
SEGI_33381 Sequoiadendron giganteum HOM05D004471 ORTHO05D005345 5.0e-67 258.1 171 70.8
Manes.08G125300 Manihot esculenta HOM05D004471 ORTHO05D005345 8.6e-67 257.3 167 74.9
Prupe.6G334800 Prunus persica HOM05D004471 ORTHO05D005345 8.6e-67 257.3 168 73.8
MBI07_g44660_MAGBIO Magnolia biondii HOM05D004471 ORTHO05D005345 1.9e-66 256.1 158 77.8
SGA_v2.0_scaffold40G15614 Striga asiatica HOM05D004471 ORTHO05D005345 1.9e-66 256.1 165 73.3
CSS0028112 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 2.5e-66 255.8 154 80.5
MD12G1229300 Malus domestica HOM05D004471 ORTHO05D005345 2.5e-66 255.8 168 72.0
Zm00001eb084990 Zea mays HOM05D004471 ORTHO05D005345 2.5e-66 255.8 165 73.9
arahy.Tifrunner.gnm1.ann1.HP6SUR Arachis hypogaea HOM05D004471 ORTHO05D005345 3.2e-66 255.4 171 72.5
CDE06G1925 Ceratophyllum demersum HOM05D004471 ORTHO05D005345 4.2e-66 255.0 171 71.3
arahy.Tifrunner.gnm1.ann1.M2LFCZ Arachis hypogaea HOM05D004471 ORTHO05D005345 7.2e-66 254.2 173 71.7
CANSAT54G1584 Cannabis sativa HOM05D004471 ORTHO05D005345 7.2e-66 254.2 169 73.4
FAN05G1097 Fragaria x ananassa HOM05D004471 ORTHO05D005345 7.2e-66 254.2 166 74.1
arahy.Tifrunner.gnm1.ann1.NV1QRL Arachis hypogaea HOM05D004471 ORTHO05D005345 1.2e-65 253.4 171 72.5
MD00G1052700 Malus domestica HOM05D004471 ORTHO05D005345 1.2e-65 253.4 168 71.4
FAN09G1313 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.6e-65 253.1 166 73.5
HPP92_003010 Vanilla planifolia HOM05D004471 ORTHO05D005345 2.8e-65 252.3 167 70.7
Cfa006508 Carpinus fangiana HOM05D004471 ORTHO05D005345 6.1e-65 251.1 155 78.7
HPP92_027546 Vanilla planifolia HOM05D004471 ORTHO05D005345 1.4e-64 250.0 165 70.9
arahy.Tifrunner.gnm1.ann1.MZ802S Arachis hypogaea HOM05D004471 ORTHO05D005345 2.3e-64 249.2 167 73.1
COL.COLO4_36062 Corchorus olitorius HOM05D004471 ORTHO05D005345 3.0e-64 248.8 220 60.5
RcHm_v2.0_Chr3g0452951 Rosa chinensis HOM05D004471 ORTHO05D005345 4.4e-63 245.0 170 70.0
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 3.7e-62 241.9 158 73.4
ATR0724G032 Amborella trichopoda HOM05D004471 ORTHO05D005345 6.3e-62 241.1 167 68.3
SMO347G0444 Selaginella moellendorffii HOM05D004471 ORTHO05D005345 2.4e-61 239.2 170 67.1
unitig_744.g24459 Utricularia gibba HOM05D004471 ORTHO05D005345 2.4e-61 239.2 169 65.7
Pp3c4_10030 Physcomitrium patens HOM05D004471 ORTHO05D005345 3.1e-61 238.8 166 66.3
Mapoly0002s0104 Marchantia polymorpha HOM05D004471 ORTHO05D005345 7.0e-61 237.7 173 66.5
SHI18238 Sapria himalayana HOM05D004471 ORTHO05D005345 1.2e-60 236.9 169 69.8
AL3G15360 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 1.3e-59 233.4 114 97.4
MD12G1230100 Malus domestica HOM05D004471 ORTHO05D005345 1.7e-59 233.0 152 71.7
DCAR_022266 Daucus carota HOM05D004471 ORTHO05D005345 1.0e-56 223.8 165 66.1
DCAR_030062 Daucus carota HOM05D004471 ORTHO05D005345 1.0e-56 223.8 166 65.7
Cpa.g.sc117.10 Carica papaya HOM05D004471 ORTHO05D005345 1.6e-52 209.9 121 80.2
Psat3g008960 Pisum sativum HOM05D004471 ORTHO05D005345 3.6e-49 198.7 117 82.9
Lsat_1_v5_gn_9_110141 Lactuca sativa HOM05D004471 ORTHO05D005345 1.8e-48 196.4 145 69.7
Cc00_g16770 Coffea canephora HOM05D004471 ORTHO05D005345 1.2e-47 193.7 116 77.6
Cc00_g29480 Coffea canephora HOM05D004471 ORTHO05D005345 1.2e-47 193.7 116 77.6
Eucgr.L02626 Eucalyptus grandis HOM05D004471 ORTHO05D005345 2.0e-47 193.0 114 80.7
CBR_g38080 Chara braunii HOM05D004471 ORTHO05D005345 4.4e-47 191.8 185 51.4
Aa31LG1G24890 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.3e-46 190.3 96 91.7
Aa31LG1G21870 Aethionema arabicum HOM05D004471 ORTHO05D005345 8.3e-46 187.6 103 85.4
Aa31LG1G26450 Aethionema arabicum HOM05D004471 ORTHO05D005345 2.4e-45 186.0 100 87.0
Gorai.013G116700 Gossypium raimondii HOM05D004471 ORTHO05D005345 3.0e-43 179.1 114 78.1
Cre16.g663650 Chlamydomonas reinhardtii HOM05D004471 ORTHO05D005345 2.3e-40 169.5 168 49.4
CSS0014300 Camellia sinensis var. sinensis HOM05D002365 ORTHO05D005345 2.5e-34 149.4 84 79.8
QL03p002083 Quercus lobata HOM05D004471 ORTHO05D005345 2.4e-29 132.9 95 70.5
Aa31LG1G25270 Aethionema arabicum HOM05D004471 ORTHO05D005345 5.4e-29 131.7 115 61.7
arahy.Tifrunner.gnm1.ann1.BCR285 Arachis hypogaea HOM05D004471 ORTHO05D005345 8.1e-25 117.9 60 86.7
MCO16G564 Micromonas commoda HOM05D004471 ORTHO05D005345 2.9e-22 109.4 157 38.9
RcHm_v2.0_Chr5g0055691 Rosa chinensis HOM05D004471 ORTHO05D005345 2.9e-22 109.4 108 52.8
Pp3c13_13330 Physcomitrium patens HOM05D004471 ORTHO05D005345 3.8e-22 109.0 115 48.7
Cfa024495 Carpinus fangiana HOM05D004471 ORTHO05D005345 7.8e-20 101.3 128 41.4
PRCOL_00002528 Prasinoderma coloniale HOM05D004471 ORTHO05D005345 5.6e-18 95.1 181 34.3
CBR_g12958 Chara braunii HOM05D000019 ORTHO05D000002 3.6e-17 92.4 91 50.5
Dinv27603 Davidia involucrata HOM05D004471 ORTHO05D005345 4.5e-15 85.5 54 75.9
FAN05G5407 Fragaria x ananassa HOM05D012224 ORTHO05D017959 1.1e-13 80.9 48 79.2
Dinv27604 Davidia involucrata HOM05D004471 ORTHO05D005345 4.2e-13 79.0 52 75.0
FAN02G2374 Fragaria x ananassa HOM05D012224 ORTHO05D017959 3.0e-11 72.8 50 72.0
QL03p002537 Quercus lobata HOM05D004471 ORTHO05D005345 1.1e-10 70.9 69 50.7


User provided reference genes

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