Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40167 Brassica carinata HOM05D011318 ORTHO05D013413 9.7e-248 859.8 455 100.0
BcaC07g40170 Brassica carinata HOM05D011318 ORTHO05D013413 9.0e-161 570.9 388 83.8
BolC8t50949H Brassica oleracea HOM05D011318 ORTHO05D013413 2.0e-107 393.7 339 65.2
C08p33540 Brassica napus HOM05D011318 ORTHO05D013413 7.5e-107 391.7 333 65.5
BraA09t40526Z Brassica rapa HOM05D011318 ORTHO05D013413 2.9e-106 389.8 339 63.4
A09p50790 Brassica napus HOM05D011318 ORTHO05D013413 8.3e-106 388.3 339 63.1
BcaNung05749 Brassica carinata HOM05D011318 ORTHO05D013413 3.1e-84 316.6 245 70.2
BcaNung05747 Brassica carinata HOM05D011318 ORTHO05D013413 6.9e-76 288.9 231 69.3
Sp5g04750 Schrenkiella parvula HOM05D011318 ORTHO05D013413 1.2e-67 261.5 303 52.8
Thhalv10006402m.g Eutrema salsugineum HOM05D011318 ORTHO05D013413 7.6e-51 205.7 261 47.5
Carub.0005s2481 Capsella rubella HOM05D011318 ORTHO05D013413 6.3e-45 186.0 335 37.9
AL5G39620 Arabidopsis lyrata HOM05D011318 ORTHO05D013413 1.1e-44 185.3 304 39.8
AT3G57970 Arabidopsis thaliana HOM05D011318 ORTHO05D013413 2.2e-42 177.6 314 36.6
Aa31LG10G12680 Aethionema arabicum HOM05D011318 ORTHO05D013413 3.5e-27 127.1 299 29.8
THA.LOC104824469 Tarenaya hassleriana HOM05D011318 ORTHO05D013413 2.6e-19 100.9 239 29.3
THA.LOC104804890 Tarenaya hassleriana HOM05D011318 ORTHO05D013413 1.5e-17 95.1 345 27.8
Aa31LG10G12670 Aethionema arabicum HOM05D010123 ORTHO05D012290 5.5e-17 93.2 235 29.8
AL5G39610 Arabidopsis lyrata HOM05D010123 ORTHO05D012290 3.6e-16 90.5 270 30.0
AT3G57960 Arabidopsis thaliana HOM05D010123 ORTHO05D012290 1.1e-12 79.0 225 29.3
C06p24980 Brassica napus HOM05D010123 ORTHO05D012290 1.3e-10 72.0 213 28.6
BolC6t37650H Brassica oleracea HOM05D010123 ORTHO05D012290 1.3e-10 72.0 213 28.6
Aa31LG10G12660 Aethionema arabicum HOM05D010123 ORTHO05D012290 2.9e-10 70.9 242 27.7
BcaC08g44881 Brassica carinata HOM05D010123 ORTHO05D012290 4.2e-09 67.0 219 25.6
BraA04t16006Z Brassica rapa HOM05D010123 ORTHO05D012290 2.7e-08 64.3 259 24.7
BcaC08g44882 Brassica carinata HOM05D010123 ORTHO05D012290 6.8e-07 59.7 73 41.1
CARHR168280 Cardamine hirsuta HOM05D011318 ORTHO05D013413 1.2e-06 58.9 103 33.0
Thhalv10006494m.g Eutrema salsugineum HOM05D010123 ORTHO05D012290 9.8e-06 55.8 169 27.8


User provided reference genes

Program Settings