Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40149 Brassica carinata HOM05D005524 ORTHO05D005392 6.6e-22 106.7 62 100.0
BcaC07g40352 Brassica carinata HOM05D005524 ORTHO05D005392 1.2e-20 102.4 62 95.2
C08p33270 Brassica napus HOM05D005524 ORTHO05D005392 1.2e-20 102.4 62 95.2
BolC8t50929H Brassica oleracea HOM05D005524 ORTHO05D005392 1.2e-20 102.4 62 95.2
A09p50540 Brassica napus HOM05D005524 ORTHO05D005392 1.6e-20 102.1 62 95.2
BcaC08g44863 Brassica carinata HOM05D005524 ORTHO05D005392 2.1e-20 101.7 62 95.2
BolC6t37629H Brassica oleracea HOM05D005524 ORTHO05D005392 2.1e-20 101.7 62 95.2
BcaC02g09954 Brassica carinata HOM05D005524 ORTHO05D005392 3.6e-20 100.9 62 93.5
A04p02980 Brassica napus HOM05D005524 ORTHO05D005392 3.6e-20 100.9 62 93.5
C04p34740 Brassica napus HOM05D005524 ORTHO05D005392 3.6e-20 100.9 62 93.5
BolC4t25028H Brassica oleracea HOM05D005524 ORTHO05D005392 3.6e-20 100.9 62 93.5
BraA04t16021Z Brassica rapa HOM05D005524 ORTHO05D005392 3.6e-20 100.9 62 93.5
AT3G57690 Arabidopsis thaliana HOM05D005524 ORTHO05D005392 4.7e-20 100.5 62 95.2
BcaB02g07583 Brassica carinata HOM05D005524 ORTHO05D005392 4.7e-20 100.5 62 95.2
A07p23640 Brassica napus HOM05D005524 ORTHO05D005392 6.2e-20 100.1 62 93.5
C06p24770 Brassica napus HOM05D005524 ORTHO05D005392 6.2e-20 100.1 62 93.5
BraA07t30018Z Brassica rapa HOM05D005524 ORTHO05D005392 6.2e-20 100.1 62 93.5
BcaB02g08300 Brassica carinata HOM05D005524 ORTHO05D005392 8.0e-20 99.8 62 93.5
BcaB02g08302 Brassica carinata HOM05D005524 ORTHO05D005392 8.0e-20 99.8 62 93.5
CARHR167870 Cardamine hirsuta HOM05D005524 ORTHO05D005392 1.0e-19 99.4 62 93.5
BraA09t40508Z Brassica rapa HOM05D005524 ORTHO05D005392 2.3e-19 98.2 62 91.9
Sp5g04940 Schrenkiella parvula HOM05D005524 ORTHO05D005392 5.2e-19 97.1 63 93.7
AL5G39310 Arabidopsis lyrata HOM05D005524 ORTHO05D005392 7.5e-18 93.2 63 90.5
Aa31LG10G12450 Aethionema arabicum HOM05D005524 ORTHO05D005392 3.2e-16 87.8 62 83.9
BcaNung07196 Brassica carinata HOM05D005524 ORTHO05D005392 1.3e-14 82.4 63 85.7
BcaB06g29217 Brassica carinata HOM05D005524 ORTHO05D005392 1.7e-14 82.0 63 84.1
BcaC02g07275 Brassica carinata HOM05D005524 ORTHO05D005392 3.9e-14 80.9 63 84.1
A04p31910 Brassica napus HOM05D005524 ORTHO05D005392 3.9e-14 80.9 63 84.1
C04p69380 Brassica napus HOM05D005524 ORTHO05D005392 3.9e-14 80.9 63 84.1
BolC4t28440H Brassica oleracea HOM05D005524 ORTHO05D005392 3.9e-14 80.9 63 84.1
BraA04t18649Z Brassica rapa HOM05D005524 ORTHO05D005392 3.9e-14 80.9 63 84.1
AT2G41905 Arabidopsis thaliana HOM05D005524 ORTHO05D005392 8.6e-14 79.7 63 82.5
Sp4g24180 Schrenkiella parvula HOM05D005524 ORTHO05D005392 1.1e-13 79.3 63 82.5
BcaB01g03426 Brassica carinata HOM05D005524 ORTHO05D005392 1.5e-13 79.0 63 81.0
AL4G40250 Arabidopsis lyrata HOM05D005524 ORTHO05D005392 2.5e-13 78.2 63 81.0
Carub.0004s2422 Capsella rubella HOM05D005524 ORTHO05D005392 3.3e-13 77.8 63 79.4
A03p23470 Brassica napus HOM05D005524 ORTHO05D005392 5.6e-13 77.0 63 81.0
BraA03t11563Z Brassica rapa HOM05D005524 ORTHO05D005392 5.6e-13 77.0 63 81.0
Carub.0005s2453 Capsella rubella HOM05D005524 ORTHO05D005392 5.6e-13 77.0 63 81.0
CARHR137000 Cardamine hirsuta HOM05D005524 ORTHO05D005392 7.3e-13 76.6 63 77.8
BcaC01g05321 Brassica carinata HOM05D005524 ORTHO05D005392 1.2e-12 75.9 63 79.4
C03p27990 Brassica napus HOM05D005524 ORTHO05D005392 1.2e-12 75.9 63 79.4
BolC3t15170H Brassica oleracea HOM05D005524 ORTHO05D005392 1.2e-12 75.9 63 79.4
ClCG10G012450 Citrullus lanatus HOM05D005524 ORTHO05D005392 5.2e-11 70.5 62 66.1
Thecc.01G412500 Theobroma cacao HOM05D005524 ORTHO05D005392 1.2e-10 69.3 62 69.4
Potri.006G056200 Populus trichocarpa HOM05D005524 ORTHO05D005392 3.4e-10 67.8 62 62.9
Duzib106G1083 Durio zibethinus HOM05D005524 ORTHO05D005392 7.5e-10 66.6 63 69.8
Eucgr.H02490 Eucalyptus grandis HOM05D005524 ORTHO05D005392 7.5e-10 66.6 62 69.4
Potri.009G063600 Populus trichocarpa HOM05D005524 ORTHO05D005392 1.3e-09 65.9 62 67.7
Duzib093G2098 Durio zibethinus HOM05D005524 ORTHO05D005392 1.7e-09 65.5 63 68.3
Potri.016G052001 Populus trichocarpa HOM05D005524 ORTHO05D005392 1.7e-09 65.5 62 61.3
Sed0007200 Sechium edule HOM05D005524 ORTHO05D005392 1.7e-09 65.5 64 65.6
TWI09G0988 Tripterygium wilfordii HOM05D005524 ORTHO05D005392 1.7e-09 65.5 62 67.7
TWI73G1008 Tripterygium wilfordii HOM05D005524 ORTHO05D005392 1.7e-09 65.5 62 67.7
Potri.001G268800 Populus trichocarpa HOM05D005524 ORTHO05D005392 2.9e-09 64.7 62 66.1
Sed0016248 Sechium edule HOM05D005524 ORTHO05D005392 2.9e-09 64.7 64 65.6
Atru.chr1.974 Acer truncatum HOM05D005524 ORTHO05D005392 3.7e-09 64.3 67 67.2
CSS0011241 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 3.7e-09 64.3 62 62.9
CsaV3_3G032220 Cucumis sativus L. HOM05D005524 ORTHO05D005392 3.7e-09 64.3 60 65.0
Sed0003541 Sechium edule HOM05D005524 ORTHO05D005392 4.9e-09 63.9 64 65.6
ClCG09G004270 Citrullus lanatus HOM05D005524 ORTHO05D005392 6.4e-09 63.5 64 62.5
CSS0022867 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 8.3e-09 63.2 62 61.3
Atru.chr1.1006 Acer truncatum HOM05D005524 ORTHO05D005392 1.1e-08 62.8 67 65.7
Duzib128G1940 Durio zibethinus HOM05D005524 ORTHO05D005392 1.1e-08 62.8 65 63.1
SHI24452 Sapria himalayana HOM05D005524 ORTHO05D005392 1.4e-08 62.4 57 64.9
Sed0014034 Sechium edule HOM05D005524 ORTHO05D005392 1.9e-08 62.0 64 64.1
CSS0036301 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 2.4e-08 61.6 62 61.3
Sabra16G0164700 Salix brachista HOM05D005524 ORTHO05D005392 2.4e-08 61.6 62 64.5
Eucgr.A02403 Eucalyptus grandis HOM05D005524 ORTHO05D005392 3.2e-08 61.2 62 61.3
Haze_03228 Corylus avellana HOM05D000430 ORTHO05D000305 4.1e-08 60.8 67 64.2
Thecc.05G164300 Theobroma cacao HOM05D005524 ORTHO05D005392 4.1e-08 60.8 64 67.2
Dinv18091 Davidia involucrata HOM05D005524 ORTHO05D005392 7.1e-08 60.1 62 58.1
CSS0030443 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 9.2e-08 59.7 62 59.7
Cc02_g27760 Coffea canephora HOM05D005524 ORTHO05D005392 2.1e-07 58.5 62 59.7
MBI01_g27620_MAGBIO Magnolia biondii HOM05D005524 ORTHO05D005392 2.7e-07 58.2 64 60.9
Sed0023384 Sechium edule HOM05D005524 ORTHO05D005392 3.5e-07 57.8 53 67.9
Sed0021947 Sechium edule HOM05D005524 ORTHO05D005392 4.6e-07 57.4 51 70.6
A05p02620 Brassica napus HOM05D000031 ORTHO05D001033 6.0e-07 57.0 48 81.2
BolC4t21953H Brassica oleracea HOM05D000031 ORTHO05D001033 6.0e-07 57.0 48 81.2
BraA05t19255Z Brassica rapa HOM05D000031 ORTHO05D001033 6.0e-07 57.0 48 81.2
Gorai.007G358400 Gossypium raimondii HOM05D008862 ORTHO05D005392 6.0e-07 57.0 67 59.7
CSS0022323 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 7.8e-07 56.6 62 59.7
CANSAT80G2246 Cannabis sativa HOM05D005524 ORTHO05D005392 7.8e-07 56.6 64 64.1
CiPaw.13G003600 Carya illinoinensis HOM05D005524 ORTHO05D005392 7.8e-07 56.6 65 61.5
Hma1.2p1_0293F.1_g116270 Hydrangea macrophylla HOM05D005524 ORTHO05D005392 7.8e-07 56.6 67 56.7
Cc02_g27740 Coffea canephora HOM05D005524 ORTHO05D005392 1.3e-06 55.8 62 58.1
Gohir.D11G327300 Gossypium hirsutum HOM05D008862 ORTHO05D005392 1.3e-06 55.8 79 55.7
C04p03120 Brassica napus HOM05D000031 ORTHO05D001033 1.7e-06 55.5 48 79.2
Gorai.007G358200 Gossypium raimondii HOM05D008862 ORTHO05D005392 2.3e-06 55.1 79 54.4
PSO384G3061 Papaver somniferum HOM05D005524 ORTHO05D005392 2.3e-06 55.1 63 57.1
Manes.07G004601 Manihot esculenta HOM05D005524 ORTHO05D005392 3.0e-06 54.7 63 57.1
CSS0036543 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 5.1e-06 53.9 62 56.5


User provided reference genes

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