Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40122 Brassica carinata HOM05D006326 ORTHO05D007589 5.8e-185 651.0 386 100.0
C08p31960 Brassica napus HOM05D004518 ORTHO05D005434 1.4e-141 506.9 390 77.2
BolC8t50813H Brassica oleracea HOM05D006326 ORTHO05D007589 5.2e-141 505.0 393 78.6
Sp5g05840 Schrenkiella parvula HOM05D006326 ORTHO05D007589 1.8e-138 496.5 418 72.2
BcaC07g39981 Brassica carinata HOM05D006326 ORTHO05D007589 5.9e-137 491.5 393 78.6
CARHR166860 Cardamine hirsuta HOM05D006326 ORTHO05D007589 2.3e-117 426.4 421 67.5
Carub.0005s2347 Capsella rubella HOM05D006326 ORTHO05D007589 5.2e-109 398.7 422 61.1
A09p49570 Brassica napus HOM05D006326 ORTHO05D007589 1.3e-107 394.0 345 73.6
BraA09t40410Z Brassica rapa HOM05D006326 ORTHO05D007589 1.3e-107 394.0 345 73.6
AL5G38090 Arabidopsis lyrata HOM05D006326 ORTHO05D007589 1.7e-104 383.6 447 57.5
Thhalv10005957m.g Eutrema salsugineum HOM05D006326 ORTHO05D007589 3.3e-103 379.4 405 62.2
Aa31LG10G11560 Aethionema arabicum HOM05D006326 ORTHO05D007589 8.3e-99 364.8 451 56.8
THA.LOC104815890 Tarenaya hassleriana HOM05D006326 ORTHO05D007589 2.7e-65 253.4 386 54.1
AT3G56720 Arabidopsis thaliana HOM05D006326 ORTHO05D007589 1.3e-59 234.6 317 59.3
CSS0039389 Camellia sinensis var. sinensis HOM05D006326 ORTHO05D007589 2.8e-46 190.3 479 36.7
Atru.chr1.1394 Acer truncatum HOM05D006326 ORTHO05D007589 1.4e-45 188.0 492 36.8
CsaV3_4G029490 Cucumis sativus L. HOM05D006326 ORTHO05D007589 5.3e-45 186.0 478 37.2
Thecc.05G128800 Theobroma cacao HOM05D006326 ORTHO05D007589 9.1e-45 185.3 252 48.0
Actinidia17957 Actinidia chinensis HOM05D006326 ORTHO05D007589 4.5e-44 183.0 496 36.1
Dinv05303 Davidia involucrata HOM05D006326 ORTHO05D007589 1.0e-43 181.8 497 39.4
SalBow6G7225 Salvia bowleyana HOM05D006326 ORTHO05D007589 3.8e-43 179.9 429 40.3
Psat6g129480 Pisum sativum HOM05D006326 ORTHO05D007589 1.1e-42 178.3 432 40.5
Hma1.2p1_0252F.1_g102780 Hydrangea macrophylla HOM05D006326 ORTHO05D007589 1.9e-42 177.6 236 49.6
GSVIVG01033643001 Vitis vinifera HOM05D006326 ORTHO05D007589 3.2e-42 176.8 514 36.8
vmacro07781 Vaccinium macrocarpon HOM05D006326 ORTHO05D007589 5.5e-42 176.0 425 45.6
Phvul.007G233400 Phaseolus vulgaris HOM05D006326 ORTHO05D007589 9.4e-42 175.3 470 40.4
Dinv07946 Davidia involucrata HOM05D006326 ORTHO05D007589 1.6e-41 174.5 482 35.7
DCAR_013645 Daucus carota HOM05D002003 ORTHO05D002037 2.1e-41 174.1 464 39.2
Ca_05361_v3 Cicer arietinum L. HOM05D006326 ORTHO05D007589 4.7e-41 172.9 448 39.5
SGA_v2.0_scaffold69G23160 Striga asiatica HOM05D006326 ORTHO05D007589 1.0e-40 171.8 402 39.3
Lalb_Chr02g0156611 Lupinus albus HOM05D006326 ORTHO05D007589 5.1e-40 169.5 461 39.0
MD14G1089900 Malus domestica HOM05D006326 ORTHO05D007589 6.7e-40 169.1 496 35.7
COL.COLO4_37458 Corchorus olitorius HOM05D006326 ORTHO05D007589 1.1e-39 168.3 250 48.4
ClCG04G005630 Citrullus lanatus HOM05D006326 ORTHO05D007589 2.0e-39 167.5 506 35.0
Lj5g0016845 Lotus japonicus HOM05D006326 ORTHO05D007589 2.0e-39 167.5 486 36.0
ECA247G0820 Erigeron canadensis HOM05D006326 ORTHO05D007589 4.4e-39 166.4 400 46.5
Lsat_1_v5_gn_9_29721 Lactuca sativa HOM05D006326 ORTHO05D007589 4.4e-39 166.4 420 39.3
AUR62030307 Chenopodium quinoa HOM05D006326 ORTHO05D007589 9.7e-39 165.2 418 44.5
FAN20G2839 Fragaria x ananassa HOM05D006326 ORTHO05D007589 2.8e-38 163.7 485 36.1
QL07p011201 Quercus lobata HOM05D006326 ORTHO05D007589 3.7e-38 163.3 505 33.9
FvH4_2g14070 Fragaria vesca HOM05D006326 ORTHO05D007589 4.8e-38 162.9 264 45.5
MSTRG.19798 Avicennia marina HOM05D006326 ORTHO05D007589 6.3e-38 162.5 424 42.7
Oeu022970.2 Olea europaea HOM05D006326 ORTHO05D007589 6.3e-38 162.5 447 36.9
VMungo0720G1800 Vigna mungo HOM05D006326 ORTHO05D007589 6.3e-38 162.5 382 38.2
Haze_20235 Corylus avellana HOM05D006326 ORTHO05D007589 1.4e-37 161.4 277 44.4
Oeu057784.1 Olea europaea HOM05D006326 ORTHO05D007589 1.4e-37 161.4 455 36.0
Oeu057785.1 Olea europaea HOM05D006326 ORTHO05D007589 4.1e-37 159.8 455 35.8
RcHm_v2.0_Chr6g0276151 Rosa chinensis HOM05D006326 ORTHO05D007589 4.1e-37 159.8 497 35.6
CiPaw.09G048500 Carya illinoinensis HOM05D006326 ORTHO05D007589 5.3e-37 159.5 502 33.9
Potri.006G039900 Populus trichocarpa HOM05D006326 ORTHO05D007589 5.3e-37 159.5 472 34.7
AUR62018355 Chenopodium quinoa HOM05D006326 ORTHO05D007589 2.0e-36 157.5 413 43.1
Solyc12g020000.3 Solanum lycopersicum HOM05D006326 ORTHO05D007589 4.5e-36 156.4 216 51.4
FAN15G3215 Fragaria x ananassa HOM05D006326 ORTHO05D007589 5.9e-36 156.0 464 35.8
Aqoxy1G00376 Aquilegia oxysepala HOM05D006326 ORTHO05D007589 1.0e-35 155.2 499 38.7
Gohir.D09G115200 Gossypium hirsutum HOM05D006326 ORTHO05D007589 1.0e-35 155.2 496 40.9
Gorai.006G132800 Gossypium raimondii HOM05D006326 ORTHO05D007589 1.3e-35 154.8 496 40.3
Cpa.g.sc92.89 Carica papaya HOM05D006326 ORTHO05D007589 2.9e-35 153.7 505 33.7
SGA_v2.0_scaffold66G22355 Striga asiatica HOM05D006326 ORTHO05D007589 3.8e-35 153.3 118 70.3
Nitab4.5_0002982g0070 Nicotiana tabacum HOM05D006326 ORTHO05D007589 5.0e-35 152.9 486 35.8
Potri.016G036000 Populus trichocarpa HOM05D006326 ORTHO05D007589 1.9e-34 151.0 382 34.8
Nitab4.5_0000237g0060 Nicotiana tabacum HOM05D006326 ORTHO05D007589 7.2e-34 149.1 482 34.9
TAR623G0088 Trochodendron aralioides HOM05D006326 ORTHO05D007589 1.2e-33 148.3 518 32.8
unitig_0.g603 Utricularia gibba HOM05D006326 ORTHO05D007589 2.1e-33 147.5 189 54.0
unitig_60.g25479 Utricularia gibba HOM05D006326 ORTHO05D007589 6.1e-33 146.0 400 35.0
Ah.13g076820 Amaranthus hybridus HOM05D002003 ORTHO05D002037 8.0e-33 145.6 433 39.0
arahy.Tifrunner.gnm1.ann1.Z1KKER Arachis hypogaea HOM05D006326 ORTHO05D007589 1.8e-32 144.4 472 33.9
Medtr1g050510 Medicago truncatula HOM05D006326 ORTHO05D007589 2.3e-32 144.1 399 37.1
SGA_v2.0_scaffold1000G53781 Striga asiatica HOM05D006326 ORTHO05D007589 1.5e-31 141.4 242 43.4
arahy.Tifrunner.gnm1.ann1.0NJ1V1 Arachis hypogaea HOM05D006326 ORTHO05D007589 2.6e-31 140.6 472 35.0
EL10Ac3g07247 Beta vulgaris HOM05D006326 ORTHO05D007589 3.3e-31 140.2 436 38.1
Sabra06G0026900 Salix brachista HOM05D006326 ORTHO05D007589 4.4e-31 139.8 468 33.3
SabraUnG0002500 Salix brachista HOM05D006326 ORTHO05D007589 4.4e-31 139.8 468 33.3
HanXRQChr15g0491141 Helianthus annuus HOM05D006326 ORTHO05D007589 9.7e-31 138.7 233 46.8
HPP92_019182 Vanilla planifolia HOM05D006326 ORTHO05D007589 1.3e-30 138.3 382 35.9
SEGI_11590 Sequoiadendron giganteum HOM05D006326 ORTHO05D007589 2.2e-30 137.5 153 55.6
CAN.G51.3 Capsicum annuum HOM05D006326 ORTHO05D007589 8.2e-30 135.6 457 35.0
TWI74G0746 Tripterygium wilfordii HOM05D006326 ORTHO05D007589 8.2e-30 135.6 427 34.0
Manes.09G004100 Manihot esculenta HOM05D006326 ORTHO05D007589 1.1e-29 135.2 434 32.3
Actinidia37880 Actinidia chinensis HOM05D006326 ORTHO05D007589 2.4e-29 134.0 474 32.7
ATR0317G072 Amborella trichopoda HOM05D006326 ORTHO05D007589 3.1e-29 133.7 525 31.0
Peaxi162Scf00076g00325 Petunia axillaris HOM05D006326 ORTHO05D007589 4.1e-29 133.3 512 32.6
CDE04G2458 Ceratophyllum demersum HOM05D006326 ORTHO05D007589 9.1e-29 132.1 213 44.6
Migut.J01646 Erythranthe guttata HOM05D006326 ORTHO05D007589 1.2e-28 131.7 358 34.1
AagrBONN_evm.TU.Sc2ySwM_344.979 Anthoceros agrestis HOM05D006326 ORTHO05D007589 3.5e-28 130.2 134 56.7
Hund19089 Selenicereus undatus HOM05D006326 ORTHO05D007589 7.7e-28 129.0 492 38.6
TWI53G1954 Tripterygium wilfordii HOM05D006326 ORTHO05D007589 3.8e-27 126.7 193 46.1
Pp3c14_4840 Physcomitrium patens HOM05D006326 ORTHO05D007589 8.5e-27 125.6 177 46.9
Ciclev10011438m.g Citrus clementina HOM05D006326 ORTHO05D007589 1.9e-26 124.4 435 34.9
CANSAT64G1393 Cannabis sativa HOM05D006326 ORTHO05D007589 3.2e-26 123.6 420 34.5
Rhsim03G0036800 Rhododendron simsii HOM05D006326 ORTHO05D007589 1.2e-25 121.7 571 35.4
MELO3C019097.2 Cucumis melo HOM05D006326 ORTHO05D007589 2.7e-25 120.6 424 33.3
TPR.G7607 Trifolium pratense HOM05D006326 ORTHO05D007589 2.7e-25 120.6 427 41.0
Mapoly0069s0088 Marchantia polymorpha HOM05D006326 ORTHO05D007589 2.3e-24 117.5 243 40.7
Glyma.02G166100 Glycine max HOM05D006326 ORTHO05D007589 9.7e-23 112.1 429 31.9
Prupe.7G034100 Prunus persica HOM05D006326 ORTHO05D007589 6.3e-22 109.4 488 30.7
PSO384G3095 Papaver somniferum HOM05D006326 ORTHO05D007589 2.4e-21 107.5 406 31.0
Glyma.10G102200 Glycine max HOM05D006326 ORTHO05D007589 1.6e-20 104.8 350 34.3
Sopen12g010520 Solanum pennellii HOM05D006326 ORTHO05D007589 3.5e-20 103.6 422 32.2
Sed0018260 Sechium edule HOM05D006326 ORTHO05D007589 4.5e-20 103.2 363 33.3
Duzib128G1973 Durio zibethinus HOM05D006326 ORTHO05D007589 1.7e-19 101.3 328 31.7
PSO339G2802 Papaver somniferum HOM05D006326 ORTHO05D007589 2.2e-19 100.9 404 31.4
Eucgr.B03116 Eucalyptus grandis HOM05D006326 ORTHO05D007589 5.0e-19 99.8 421 31.1
FAN24G3485 Fragaria x ananassa HOM05D006326 ORTHO05D007589 1.1e-18 98.6 431 31.3
SMO351G0508 Selaginella moellendorffii HOM05D006326 ORTHO05D007589 1.1e-18 98.6 142 47.2
Pp3c1_21670 Physcomitrium patens HOM05D006326 ORTHO05D007589 1.5e-18 98.2 113 50.4
Sc13g0001090 Simmondsia chinensis HOM05D006326 ORTHO05D007589 7.2e-18 95.9 376 32.2
Gohir.A09G118300 Gossypium hirsutum HOM05D006326 ORTHO05D007589 2.1e-17 94.4 447 35.8
CiPaw.10G040500 Carya illinoinensis HOM05D006326 ORTHO05D007589 2.3e-16 90.9 448 29.0
Medtr0722s0010 Medicago truncatula HOM05D006326 ORTHO05D007589 4.0e-16 90.1 77 67.5
Cc06_g19610 Coffea canephora HOM05D006326 ORTHO05D007589 6.8e-16 89.4 441 30.4
Actinidia01833 Actinidia chinensis HOM05D006326 ORTHO05D007589 8.8e-16 89.0 78 66.7
CBR_g50470 Chara braunii HOM05D006326 ORTHO05D007589 1.4e-13 81.6 306 30.4
CSS0022371 Camellia sinensis var. sinensis HOM05D006326 ORTHO05D007589 9.1e-13 79.0 63 63.5
Zm00001eb185630 Zea mays HOM05D006326 ORTHO05D007589 8.9e-08 62.4 375 29.1
Mapoly0021s0060 Marchantia polymorpha HOM05D006326 ORTHO05D007589 3.7e-06 57.0 104 37.5


User provided reference genes

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