Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40118 Brassica carinata HOM05D009749 ORTHO05D008033 1.3e-169 599.7 334 100.0
A09p49630 Brassica napus HOM05D009749 ORTHO05D008033 2.4e-134 482.6 342 78.9
BraA09t40416Z Brassica rapa HOM05D009749 ORTHO05D008033 2.4e-134 482.6 342 78.9
C08p32040 Brassica napus HOM05D009749 ORTHO05D008033 1.7e-132 476.5 342 78.9
BcaC07g39991 Brassica carinata HOM05D009749 ORTHO05D008033 2.9e-132 475.7 342 78.9
BolC8t50822H Brassica oleracea HOM05D009749 ORTHO05D008033 2.9e-132 475.7 342 78.9
Sp5g05780 Schrenkiella parvula HOM05D009749 ORTHO05D008033 1.2e-122 443.7 344 73.5
A04p03560 Brassica napus HOM05D009749 ORTHO05D008033 2.2e-111 406.4 344 69.5
BolC4t25234H Brassica oleracea HOM05D009749 ORTHO05D008033 5.3e-110 401.7 351 68.1
C04p35700 Brassica napus HOM05D009749 ORTHO05D008033 7.0e-110 401.4 344 69.2
BcaB02g08346 Brassica carinata HOM05D009749 ORTHO05D008033 1.0e-108 397.5 341 69.2
AT3G56810 Arabidopsis thaliana HOM05D009749 ORTHO05D008033 4.1e-102 375.6 351 66.4
AL5G38190 Arabidopsis lyrata HOM05D009749 ORTHO05D008033 7.0e-102 374.8 349 66.5
BolC6t37547H Brassica oleracea HOM05D009749 ORTHO05D008033 1.2e-101 374.0 348 66.7
BraA04t16080Z Brassica rapa HOM05D009749 ORTHO05D008033 1.6e-101 373.6 346 65.0
BcaC08g44807 Brassica carinata HOM05D009749 ORTHO05D008033 4.5e-101 372.1 348 66.1
CARHR166960 Cardamine hirsuta HOM05D009749 ORTHO05D008033 8.5e-100 367.9 343 65.3
C06p23780 Brassica napus HOM05D009749 ORTHO05D008033 4.7e-98 362.1 348 65.2
BcaB02g07636 Brassica carinata HOM05D009749 ORTHO05D008033 6.3e-95 351.7 346 63.9
A07p23080 Brassica napus HOM05D009749 ORTHO05D008033 3.1e-94 349.4 351 64.1
BraA07t29970Z Brassica rapa HOM05D009749 ORTHO05D008033 3.1e-94 349.4 351 64.1
Carub.0005s2354 Capsella rubella HOM05D009749 ORTHO05D008033 4.5e-93 345.5 351 61.8
BcaC02g09872 Brassica carinata HOM05D009749 ORTHO05D008033 1.7e-71 273.9 246 67.1
Thhalv10006250m.g Eutrema salsugineum HOM05D009749 ORTHO05D008033 4.0e-57 226.1 181 70.7
THA.LOC104803305 Tarenaya hassleriana HOM05D009749 ORTHO05D008033 1.7e-39 167.5 294 42.2
Thhalv10006450m.g Eutrema salsugineum HOM05D009749 ORTHO05D008033 6.0e-37 159.1 159 65.4
Aa31LG10G11650 Aethionema arabicum HOM05D009749 ORTHO05D008033 6.0e-29 132.5 139 54.7
PGR142G2092 Punica granatum HOM05D007667 ORTHO05D008033 7.9e-13 79.0 281 30.6
Atru.chr8.918 Acer truncatum HOM05D007667 ORTHO05D008033 1.0e-12 78.6 313 29.1
MD12G1111200 Malus domestica HOM05D007667 ORTHO05D008033 1.0e-12 78.6 243 31.7
CSS0027019 Camellia sinensis var. sinensis HOM05D007667 ORTHO05D008033 6.7e-12 75.9 242 31.8
Manes.08G067300 Manihot esculenta HOM05D007667 ORTHO05D008033 8.7e-12 75.5 230 30.0
Eucgr.K01702 Eucalyptus grandis HOM05D007667 ORTHO05D008033 1.5e-11 74.7 293 27.6
Sabra16G0030500 Salix brachista HOM05D007667 ORTHO05D008033 1.6e-10 71.2 258 26.7
arahy.Tifrunner.gnm1.ann1.2JVN0K Arachis hypogaea HOM05D007667 ORTHO05D008033 2.8e-10 70.5 242 26.0
Potri.016G024600 Populus trichocarpa HOM05D007667 ORTHO05D008033 3.7e-10 70.1 249 28.5
arahy.Tifrunner.gnm1.ann1.B2YDCU Arachis hypogaea HOM05D007667 ORTHO05D008033 4.8e-10 69.7 242 26.0
Ciclev10012153m.g Citrus clementina HOM05D007667 ORTHO05D008033 1.1e-09 68.6 241 28.2
GSVIVG01025830001 Vitis vinifera HOM05D007667 ORTHO05D008033 1.1e-09 68.6 253 25.7
Glyma.03G003800 Glycine max HOM05D007667 ORTHO05D008033 2.4e-09 67.4 236 28.8
CANSAT01G1982 Cannabis sativa HOM05D007667 ORTHO05D008033 3.1e-09 67.0 257 24.5
SalBow6G3030 Salvia bowleyana HOM05D007667 ORTHO05D008033 3.1e-09 67.0 88 40.9
SalBow6G3731 Salvia bowleyana HOM05D007667 ORTHO05D008033 3.1e-09 67.0 88 40.9
CiPaw.09G161700 Carya illinoinensis HOM05D007667 ORTHO05D008033 4.1e-09 66.6 289 26.0
COL.COLO4_22773 Corchorus olitorius HOM05D007667 ORTHO05D008033 5.3e-09 66.2 91 40.7
Phvul.001G101500 Phaseolus vulgaris HOM05D007667 ORTHO05D008033 5.3e-09 66.2 278 26.6
Sabra06G0019700 Salix brachista HOM05D007667 ORTHO05D008033 5.3e-09 66.2 232 28.4
Duzib128G0300 Durio zibethinus HOM05D007667 ORTHO05D008033 6.9e-09 65.9 242 27.3
SGA_v2.0_scaffold66G22329 Striga asiatica HOM05D007667 ORTHO05D008033 1.2e-08 65.1 259 26.3
VMungo1383G2866 Vigna mungo HOM05D007667 ORTHO05D008033 3.4e-08 63.5 276 27.5
RhsimUnG0021200 Rhododendron simsii HOM05D007667 ORTHO05D008033 4.5e-08 63.2 267 27.0
TPR.G23684 Trifolium pratense HOM05D007667 ORTHO05D008033 4.5e-08 63.2 237 30.0
DCAR_020622 Daucus carota HOM05D007667 ORTHO05D008033 1.7e-07 61.2 134 31.3
Medtr7g087970 Medicago truncatula HOM05D007667 ORTHO05D008033 1.7e-07 61.2 238 26.5
Oeu041986.1 Olea europaea HOM05D007667 ORTHO05D008033 1.7e-07 61.2 248 27.0
Potri.006G026600 Populus trichocarpa HOM05D007667 ORTHO05D008033 2.9e-07 60.5 232 25.0
Glyma.19G122200 Glycine max HOM05D007667 ORTHO05D008033 3.8e-07 60.1 244 26.6
Haze_20347 Corylus avellana HOM05D007667 ORTHO05D008033 5.0e-07 59.7 238 25.2
Psat0s3111g0200 Pisum sativum HOM05D007667 ORTHO05D008033 5.0e-07 59.7 235 29.4
Cfa019904 Carpinus fangiana HOM05D007667 ORTHO05D008033 1.1e-06 58.5 342 23.4
Lj1g0016001 Lotus japonicus HOM05D007667 ORTHO05D008033 1.4e-06 58.2 244 26.2
Migut.J01575 Erythranthe guttata HOM05D007667 ORTHO05D008033 1.9e-06 57.8 257 25.7
Oeu060747.1 Olea europaea HOM05D007667 ORTHO05D008033 1.9e-06 57.8 238 27.7
RcHm_v2.0_Chr3g0495051 Rosa chinensis HOM05D007667 ORTHO05D008033 1.9e-06 57.8 240 26.7
Thecc.05G130400 Theobroma cacao HOM05D007667 ORTHO05D008033 1.9e-06 57.8 233 24.0
Cc06_g20370 Coffea canephora HOM05D007667 ORTHO05D008033 5.5e-06 56.2 88 31.8
CsaV3_3G039420 Cucumis sativus L. HOM05D007667 ORTHO05D008033 9.4e-06 55.5 241 25.3


User provided reference genes

Program Settings