Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40108 Brassica carinata HOM05D005060 ORTHO05D005975 9.5e-56 220.3 144 100.0
A09p49780 Brassica napus HOM05D005060 ORTHO05D005975 3.2e-51 205.3 144 86.8
BraA09t40431Z Brassica rapa HOM05D005060 ORTHO05D005975 3.2e-51 205.3 144 86.8
BcaC07g40003 Brassica carinata HOM05D005060 ORTHO05D005975 1.6e-50 203.0 144 86.1
C08p32160 Brassica napus HOM05D005060 ORTHO05D005975 1.6e-50 203.0 144 86.1
BolC8t50834H Brassica oleracea HOM05D005060 ORTHO05D005975 1.6e-50 203.0 144 86.1
A04p03610 Brassica napus HOM05D005060 ORTHO05D005975 6.2e-47 191.0 144 84.0
BolC6t37551H Brassica oleracea HOM05D005060 ORTHO05D005975 5.8e-45 184.5 144 86.8
C06p23830 Brassica napus HOM05D005060 ORTHO05D005975 7.5e-45 184.1 144 86.8
BcaB02g08343 Brassica carinata HOM05D005060 ORTHO05D005975 3.7e-44 181.8 146 78.1
BcaC02g09878 Brassica carinata HOM05D005060 ORTHO05D005975 3.7e-44 181.8 147 78.9
C04p35630 Brassica napus HOM05D005060 ORTHO05D005975 3.7e-44 181.8 147 78.9
BolC4t25241H Brassica oleracea HOM05D005060 ORTHO05D005975 3.7e-44 181.8 147 78.9
Sp5g05680 Schrenkiella parvula HOM05D005060 ORTHO05D005975 1.9e-43 179.5 152 79.6
Thhalv10006294m.g Eutrema salsugineum HOM05D005060 ORTHO05D005975 3.5e-42 175.3 151 84.1
BraA07t29972Z Brassica rapa HOM05D000531 ORTHO05D001630 5.0e-41 171.4 148 75.7
Carub.0005s2365 Capsella rubella HOM05D005060 ORTHO05D005975 6.2e-39 164.5 153 77.1
AT3G56910 Arabidopsis thaliana HOM05D005060 ORTHO05D005975 6.8e-38 161.0 151 70.9
AL5G38310 Arabidopsis lyrata HOM05D005060 ORTHO05D005975 8.9e-38 160.6 153 77.1
A07p23120 Brassica napus HOM05D005060 ORTHO05D005975 1.2e-37 160.2 145 73.1
CARHR167060 Cardamine hirsuta HOM05D005060 ORTHO05D005975 3.4e-37 158.7 152 71.1
BcaC08g44810 Brassica carinata HOM05D005060 ORTHO05D005975 9.9e-37 157.1 142 64.1
A07p12270 Brassica napus HOM05D006945 ORTHO05D005549 2.6e-21 105.9 78 76.9
A07p12290 Brassica napus HOM05D006945 ORTHO05D005549 2.6e-21 105.9 78 76.9
BraA07t29011Z Brassica rapa HOM05D006945 ORTHO05D005549 2.6e-21 105.9 78 76.9
Aa31LG10G11770 Aethionema arabicum HOM05D005060 ORTHO05D005975 1.9e-19 99.8 156 66.7
BcaB03g14272 Brassica carinata HOM05D005060 ORTHO05D005975 5.1e-17 91.7 109 58.7
THA.LOC104803240 Tarenaya hassleriana HOM05D005060 ORTHO05D005975 5.8e-13 78.2 152 60.5
Thecc.05G132800 Theobroma cacao HOM05D005060 ORTHO05D005975 2.1e-10 69.7 150 42.7
Atru.chr1.1520 Acer truncatum HOM05D005060 ORTHO05D005975 7.9e-10 67.8 155 43.2
Ciclev10013047m.g Citrus clementina HOM05D005060 ORTHO05D005975 1.8e-09 66.6 141 54.6
Gohir.D01G177000 Gossypium hirsutum HOM05D005060 ORTHO05D005975 8.7e-09 64.3 150 40.7
Gorai.002G226200 Gossypium raimondii HOM05D005060 ORTHO05D005975 8.7e-09 64.3 150 40.7
Gohir.A01G192800 Gossypium hirsutum HOM05D005060 ORTHO05D005975 3.3e-08 62.4 150 40.0
Sabra16G0032200 Salix brachista HOM05D005060 ORTHO05D005975 3.3e-08 62.4 151 41.7
vmacro08973 Vaccinium macrocarpon HOM05D005060 ORTHO05D005975 3.3e-08 62.4 137 35.0
Lj1g0025022 Lotus japonicus HOM05D005060 ORTHO05D005975 4.3e-08 62.0 162 38.3
Ca_08351_v3 Cicer arietinum L. HOM05D005060 ORTHO05D005975 5.6e-08 61.6 155 40.6
Cpa.g.sc33.199 Carica papaya HOM05D005060 ORTHO05D005975 9.6e-08 60.8 151 47.0
Potri.016G027600 Populus trichocarpa HOM05D005060 ORTHO05D005975 9.6e-08 60.8 145 39.3
TWI53G1989 Tripterygium wilfordii HOM05D005060 ORTHO05D005975 2.1e-07 59.7 153 43.1
Prupe.2G065900 Prunus persica HOM05D005060 ORTHO05D005975 2.8e-07 59.3 90 60.0
Lalb_Chr24g0400621 Lupinus albus HOM05D005060 ORTHO05D005975 3.7e-07 58.9 160 36.9
Lalb_Chr22g0358011 Lupinus albus HOM05D005060 ORTHO05D005975 4.8e-07 58.5 162 38.9
Sabra16G0031900 Salix brachista HOM05D005060 ORTHO05D005975 8.1e-07 57.8 92 55.4
Lalb_Chr14g0365381 Lupinus albus HOM05D005060 ORTHO05D005975 1.4e-06 57.0 161 37.9
MD07G1060800 Malus domestica HOM05D005060 ORTHO05D005975 2.4e-06 56.2 99 47.5
Phvul.001G116500 Phaseolus vulgaris HOM05D005060 ORTHO05D005975 2.4e-06 56.2 148 40.5
VMungo1383G0657 Vigna mungo HOM05D005060 ORTHO05D005975 2.4e-06 56.2 148 40.5
Duzib093G0151 Durio zibethinus HOM05D005060 ORTHO05D005975 4.0e-06 55.5 150 41.3
Rhsim04G0118500 Rhododendron simsii HOM05D005060 ORTHO05D005975 5.3e-06 55.1 153 35.3
Gohir.A13G001200 Gossypium hirsutum HOM05D005060 ORTHO05D005975 9.0e-06 54.3 145 34.5
MD02G1260500 Malus domestica HOM05D005060 ORTHO05D005975 9.0e-06 54.3 159 37.1


User provided reference genes

Program Settings