Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40074 Brassica carinata HOM05D001925 ORTHO05D005701 3.5e-77 291.6 151 100.0
BcaC07g40045 Brassica carinata HOM05D001925 ORTHO05D005701 4.7e-21 105.1 53 96.2
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 8.8e-20 100.9 88 69.3
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 1.1e-19 100.5 88 67.0
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 1.5e-19 100.1 87 69.0
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 1.5e-19 100.1 88 68.2
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 1.5e-19 100.1 87 69.0
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 2.0e-19 99.8 88 68.2
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 2.0e-19 99.8 88 68.2
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 3.3e-19 99.0 88 67.0
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 2.2e-18 96.3 87 65.5
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 3.7e-18 95.5 86 68.6
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 1.4e-17 93.6 88 63.6
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 1.8e-17 93.2 85 68.2
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 1.2e-16 90.5 92 63.0
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 1.0e-15 87.4 88 64.8
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 3.2e-14 82.4 85 61.2
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 1.4e-12 77.0 83 53.0
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 2.3e-12 76.3 83 57.8
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 2.3e-12 76.3 87 54.0
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 4.0e-12 75.5 83 53.0
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 6.7e-12 74.7 56 73.2
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 1.2e-11 73.9 83 53.0
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 1.5e-11 73.6 77 54.5
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 1.5e-11 73.6 60 66.7
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 1.5e-11 73.6 60 66.7
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 2.0e-11 73.2 77 62.3
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 2.6e-11 72.8 83 51.8
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 2.6e-11 72.8 83 51.8
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 2.6e-11 72.8 83 51.8
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 2.6e-11 72.8 82 51.2
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 3.3e-11 72.4 60 65.0
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 3.3e-11 72.4 83 50.6
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 4.4e-11 72.0 85 51.8
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 4.4e-11 72.0 83 50.6
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 5.7e-11 71.6 65 55.4
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 5.7e-11 71.6 65 55.4
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 5.7e-11 71.6 89 50.6
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 7.5e-11 71.2 83 53.0
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 9.7e-11 70.9 80 52.5
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 9.7e-11 70.9 83 49.4
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 1.3e-10 70.5 60 58.3
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 1.3e-10 70.5 80 53.8
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 1.7e-10 70.1 80 51.2
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 1.7e-10 70.1 80 50.0
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.7e-10 70.1 80 50.0
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.7e-10 70.1 80 50.0
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.7e-10 70.1 80 50.0
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.7e-10 70.1 80 50.0
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 1.7e-10 70.1 80 50.0
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 2.2e-10 69.7 89 49.4
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 2.8e-10 69.3 59 64.4
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 2.8e-10 69.3 87 47.1
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 2.8e-10 69.3 87 47.1
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 3.7e-10 68.9 77 53.2
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 3.7e-10 68.9 77 53.2
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.7e-10 68.9 80 50.0
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 4.8e-10 68.6 85 51.8
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 4.8e-10 68.6 81 48.1
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 4.8e-10 68.6 81 48.1
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 4.8e-10 68.6 82 50.0
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 6.3e-10 68.2 85 50.6
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 6.3e-10 68.2 81 48.1
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 6.3e-10 68.2 78 51.3
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 8.2e-10 67.8 85 49.4
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 8.2e-10 67.8 87 49.4
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 8.2e-10 67.8 81 50.6
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.1e-09 67.4 80 48.8
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 1.1e-09 67.4 78 51.3
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 1.8e-09 66.6 78 48.7
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 1.8e-09 66.6 60 56.7
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 1.8e-09 66.6 82 50.0
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 2.4e-09 66.2 82 48.8
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 2.4e-09 66.2 60 60.0
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 2.4e-09 66.2 82 50.0
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 2.4e-09 66.2 78 51.3
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 3.1e-09 65.9 74 50.0
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 3.1e-09 65.9 74 50.0
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 4.1e-09 65.5 80 47.5
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 4.1e-09 65.5 80 47.5
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 4.1e-09 65.5 78 50.0
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 4.1e-09 65.5 59 61.0
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 5.3e-09 65.1 74 48.6
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 7.0e-09 64.7 61 55.7
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 9.1e-09 64.3 76 51.3
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 9.1e-09 64.3 83 48.2
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 9.1e-09 64.3 83 44.6
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 9.1e-09 64.3 78 48.7
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 1.6e-08 63.5 86 45.3
FAN15G3430 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.7e-08 62.8 87 46.0
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 2.7e-08 62.8 77 46.8
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 2.7e-08 62.8 77 46.8
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 2.7e-08 62.8 77 46.8
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 4.5e-08 62.0 83 47.0
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 5.9e-08 61.6 84 47.6
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 5.9e-08 61.6 86 44.2
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 5.9e-08 61.6 58 55.2
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 7.7e-08 61.2 79 43.0
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 1.3e-07 60.5 80 45.0
BcaC01g06469 Brassica carinata HOM05D055712 ORTHO05D096201 1.3e-07 60.5 36 80.6
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 1.3e-07 60.5 82 43.9
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 1.7e-07 60.1 84 46.4
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 1.7e-07 60.1 76 47.4
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 2.2e-07 59.7 58 53.4
FAN24G1219 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.9e-07 59.3 87 44.8
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 3.8e-07 58.9 54 61.1
C09p49930 Brassica napus HOM05D001925 ORTHO05D039571 1.1e-06 57.4 85 51.8
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 1.9e-06 56.6 75 45.3
FvH4_2g10061 Fragaria vesca HOM05D001925 ORTHO05D005701 2.5e-06 56.2 87 42.5
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 5.5e-06 55.1 91 37.4


User provided reference genes

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