Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40064 Brassica carinata HOM05D003740 ORTHO05D004611 4.4e-178 627.9 322 100.0
C08p32520 Brassica napus HOM05D003740 ORTHO05D004611 1.7e-177 625.9 322 99.4
A09p50150 Brassica napus HOM05D003740 ORTHO05D004611 3.7e-177 624.8 322 99.1
BraA09t40467Z Brassica rapa HOM05D003740 ORTHO05D004611 3.7e-177 624.8 322 99.1
BolC8t50867H Brassica oleracea HOM05D003740 ORTHO05D004611 4.9e-177 624.4 322 99.1
BcaB02g08329 Brassica carinata HOM05D003740 ORTHO05D004611 2.0e-175 619.0 322 97.8
Thhalv10005999m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 2.0e-175 619.0 322 97.5
Thhalv10007732m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 2.0e-175 619.0 322 97.5
BcaC02g09904 Brassica carinata HOM05D003740 ORTHO05D004611 3.5e-175 618.2 322 97.5
C04p35340 Brassica napus HOM05D003740 ORTHO05D004611 3.5e-175 618.2 322 97.5
BolC4t25088H Brassica oleracea HOM05D003740 ORTHO05D004611 3.5e-175 618.2 322 97.5
A04p03820 Brassica napus HOM05D003740 ORTHO05D004611 4.6e-175 617.8 322 97.8
AL5G38710 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 1.3e-174 616.3 322 96.6
AT3G57220 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 3.9e-174 614.8 322 96.3
BraA04t16052Z Brassica rapa HOM05D003740 ORTHO05D004611 8.6e-174 613.6 322 96.9
Carub.0005s2403 Capsella rubella HOM05D003740 ORTHO05D004611 1.5e-173 612.8 322 96.6
BraA05t19226Z Brassica rapa HOM05D003740 ORTHO05D004611 1.2e-170 603.2 322 94.7
AL4G39580 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 1.5e-170 602.8 322 94.1
A05p02310 Brassica napus HOM05D003740 ORTHO05D004611 3.4e-170 601.7 322 94.1
THA.LOC104816968 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 7.5e-170 600.5 322 93.2
AT2G41490 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 1.3e-169 599.7 322 93.5
C04p02750 Brassica napus HOM05D003740 ORTHO05D004611 1.7e-169 599.4 322 93.8
BolC4t21915H Brassica oleracea HOM05D003740 ORTHO05D004611 1.7e-169 599.4 322 93.8
BcaNung06793 Brassica carinata HOM05D003740 ORTHO05D004611 2.2e-169 599.0 322 93.5
CARHR136610 Cardamine hirsuta HOM05D003740 ORTHO05D004611 6.4e-169 597.4 322 92.9
THA.LOC104803288 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 1.1e-168 596.7 322 93.8
Sp4g23760 Schrenkiella parvula HOM05D003740 ORTHO05D004611 1.2e-167 593.2 322 92.5
Carub.0004s2379 Capsella rubella HOM05D003740 ORTHO05D004611 5.1e-166 587.8 322 91.3
Thhalv10016688m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 1.6e-164 582.8 324 91.0
Aa31LG10G12120 Aethionema arabicum HOM05D003740 ORTHO05D004611 8.1e-164 580.5 370 83.2
Aa31LG1G23510 Aethionema arabicum HOM05D003740 ORTHO05D004611 5.2e-163 577.8 322 90.1
Thecc.05G145300 Theobroma cacao HOM05D003740 ORTHO05D004611 8.1e-156 553.9 322 85.1
GSVIVG01033552001 Vitis vinifera HOM05D003740 ORTHO05D004611 4.0e-155 551.6 322 84.2
Prupe.7G050100 Prunus persica HOM05D003740 ORTHO05D004611 5.2e-155 551.2 322 83.5
Sed0013360 Sechium edule HOM05D003740 ORTHO05D004611 6.8e-155 550.8 322 84.8
Gorai.006G134300 Gossypium raimondii HOM05D003740 ORTHO05D004611 8.9e-155 550.4 322 84.2
PGR004G2716 Punica granatum HOM05D003740 ORTHO05D004611 1.2e-154 550.1 322 83.5
Dinv05312 Davidia involucrata HOM05D003740 ORTHO05D004611 2.0e-154 549.3 322 83.9
VMungo0720G0943 Vigna mungo HOM05D003740 ORTHO05D004611 2.0e-154 549.3 322 83.9
RcHm_v2.0_Chr3g0484361 Rosa chinensis HOM05D003740 ORTHO05D004611 3.4e-154 548.5 322 83.2
Gohir.D09G116000 Gossypium hirsutum HOM05D003740 ORTHO05D004611 4.4e-154 548.1 322 83.9
Manes.08G053600 Manihot esculenta HOM05D003740 ORTHO05D004611 4.4e-154 548.1 322 83.5
Peaxi162Scf00130g01015 Petunia axillaris HOM05D003740 ORTHO05D004611 4.4e-154 548.1 322 83.9
MD12G1086200 Malus domestica HOM05D003740 ORTHO05D004611 5.8e-154 547.7 322 83.9
Gohir.A09G119800 Gossypium hirsutum HOM05D003740 ORTHO05D004611 7.6e-154 547.4 322 83.5
Lalb_Chr02g0156411 Lupinus albus HOM05D003740 ORTHO05D004611 7.6e-154 547.4 322 83.5
Phvul.007G249500 Phaseolus vulgaris HOM05D003740 ORTHO05D004611 9.9e-154 547.0 322 83.5
TWI53G1619 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 9.9e-154 547.0 322 83.2
Glyma.10G105900 Glycine max HOM05D003740 ORTHO05D004611 1.7e-153 546.2 322 82.9
Ah.13g076780 Amaranthus hybridus HOM05D003740 ORTHO05D004611 2.2e-153 545.8 322 85.1
MELO3C014202.2 Cucumis melo HOM05D003740 ORTHO05D004611 2.2e-153 545.8 322 83.2
CsaV3_4G027630 Cucumis sativus L. HOM05D003740 ORTHO05D004611 2.2e-153 545.8 322 83.2
ClCG04G004010 Citrullus lanatus HOM05D003740 ORTHO05D004611 2.9e-153 545.4 322 83.2
Eucgr.A02296 Eucalyptus grandis HOM05D003740 ORTHO05D004611 2.9e-153 545.4 322 82.9
FAN05G1357 Fragaria x ananassa HOM05D003740 ORTHO05D004611 2.9e-153 545.4 322 82.3
Dinv34246 Davidia involucrata HOM05D003740 ORTHO05D004611 3.8e-153 545.0 322 82.9
FvH4_6g24760 Fragaria vesca HOM05D003740 ORTHO05D004611 4.9e-153 544.7 322 82.3
FAN09G1292 Fragaria x ananassa HOM05D003740 ORTHO05D004611 6.4e-153 544.3 322 82.0
Sed0006234 Sechium edule HOM05D003740 ORTHO05D004611 6.4e-153 544.3 322 84.2
MD14G1080600 Malus domestica HOM05D003740 ORTHO05D004611 1.1e-152 543.5 323 83.3
Lalb_Chr21g0316601 Lupinus albus HOM05D003740 ORTHO05D004611 1.9e-152 542.7 322 82.9
Medtr3g045150 Medicago truncatula HOM05D003740 ORTHO05D004611 1.9e-152 542.7 322 82.9
Ca_25790_v3 Cicer arietinum L. HOM05D003740 ORTHO05D004611 2.4e-152 542.3 322 82.9
Glyma.02G190700 Glycine max HOM05D003740 ORTHO05D004611 2.4e-152 542.3 322 82.6
CSS0019779 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 4.2e-152 541.6 322 82.9
Ciclev10005020m.g Citrus clementina HOM05D003740 ORTHO05D004611 5.4e-152 541.2 322 82.6
Medtr0012s0090 Medicago truncatula HOM05D003740 ORTHO05D004611 5.4e-152 541.2 322 82.9
PGSC0003DMG400012722 Solanum tuberosum HOM05D003740 ORTHO05D004611 5.4e-152 541.2 322 83.2
Migut.K00119 Erythranthe guttata HOM05D003740 ORTHO05D004611 7.1e-152 540.8 322 82.6
Solyc04g016520.3 Solanum lycopersicum HOM05D003740 ORTHO05D004611 7.1e-152 540.8 322 82.9
Sopen04g008590 Solanum pennellii HOM05D003740 ORTHO05D004611 7.1e-152 540.8 322 82.9
TWI77G0796 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 7.1e-152 540.8 322 82.6
EL10Ac3g07158 Beta vulgaris HOM05D003740 ORTHO05D004611 9.3e-152 540.4 323 83.3
Prupe.1G032300 Prunus persica HOM05D003740 ORTHO05D004611 9.3e-152 540.4 322 82.0
CAN.G1237.3 Capsicum annuum HOM05D003740 ORTHO05D004611 1.2e-151 540.0 322 82.6
Psat6g118200 Pisum sativum HOM05D003740 ORTHO05D004611 1.2e-151 540.0 322 82.6
arahy.Tifrunner.gnm1.ann1.0DR8LC Arachis hypogaea HOM05D003740 ORTHO05D004611 1.6e-151 539.7 322 82.3
MSTRG.26143 Avicennia marina HOM05D003740 ORTHO05D004611 1.6e-151 539.7 322 81.7
CiPaw.09G042200 Carya illinoinensis HOM05D003740 ORTHO05D004611 1.6e-151 539.7 322 83.2
Lj5g0015883 Lotus japonicus HOM05D003740 ORTHO05D004611 1.6e-151 539.7 322 82.3
QL07p005086 Quercus lobata HOM05D003740 ORTHO05D004611 2.1e-151 539.3 321 82.9
Rhsim03G0031000 Rhododendron simsii HOM05D003740 ORTHO05D004611 2.7e-151 538.9 322 82.0
Cfa016754 Carpinus fangiana HOM05D003740 ORTHO05D004611 3.5e-151 538.5 322 82.9
HanXRQChr10g0277771 Helianthus annuus HOM05D003740 ORTHO05D004611 3.5e-151 538.5 322 82.0
Migut.J01706 Erythranthe guttata HOM05D003740 ORTHO05D004611 4.6e-151 538.1 322 82.3
CDE08G1337 Ceratophyllum demersum HOM05D003740 ORTHO05D004611 6.0e-151 537.7 322 81.1
PSO339G5696 Papaver somniferum HOM05D003740 ORTHO05D004611 7.8e-151 537.3 322 80.7
PSO384G1999 Papaver somniferum HOM05D003740 ORTHO05D004611 7.8e-151 537.3 322 80.7
TWI74G0940 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 7.8e-151 537.3 322 82.0
Haze_19750 Corylus avellana HOM05D003740 ORTHO05D004611 1.0e-150 537.0 322 82.9
Actinidia39193 Actinidia chinensis HOM05D003740 ORTHO05D004611 1.3e-150 536.6 322 81.7
MSTRG.10801 Avicennia marina HOM05D003740 ORTHO05D004611 1.3e-150 536.6 322 81.7
TPR.G19664 Trifolium pratense HOM05D003740 ORTHO05D004611 1.7e-150 536.2 322 82.6
arahy.Tifrunner.gnm1.ann1.G7Z7YE Arachis hypogaea HOM05D003740 ORTHO05D004611 2.3e-150 535.8 323 82.0
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 3.9e-150 535.0 318 83.3
Actinidia38142 Actinidia chinensis HOM05D003740 ORTHO05D004611 5.1e-150 534.6 322 81.4
Nn7g37216 Nelumbo nucifera HOM05D003740 ORTHO05D004611 6.6e-150 534.3 322 81.7
FAN02G1973 Fragaria x ananassa HOM05D003740 ORTHO05D004611 1.1e-149 533.5 339 77.9
Nn6g34910 Nelumbo nucifera HOM05D003740 ORTHO05D004611 1.9e-149 532.7 322 81.4
Atru.chr6.1381 Acer truncatum HOM05D003740 ORTHO05D004611 9.6e-149 530.4 322 81.1
AUR62024529 Chenopodium quinoa HOM05D003740 ORTHO05D004611 1.3e-148 530.0 323 82.4
COL.COLO4_21300 Corchorus olitorius HOM05D003740 ORTHO05D004611 2.8e-148 528.9 366 74.0
RcHm_v2.0_Chr3g0484511 Rosa chinensis HOM05D003740 ORTHO05D004611 3.6e-148 528.5 322 81.4
unitig_748.g7227 Utricularia gibba HOM05D003740 ORTHO05D004611 5.3e-147 524.6 322 80.1
AUR62026121 Chenopodium quinoa HOM05D003740 ORTHO05D004611 2.0e-146 522.7 322 81.1
Oeu006922.2 Olea europaea HOM05D003740 ORTHO05D004611 2.6e-146 522.3 325 80.6
Sabra16G0047800 Salix brachista HOM05D003740 ORTHO05D004611 7.6e-146 520.8 322 78.9
Potri.006G045700 Populus trichocarpa HOM05D003740 ORTHO05D004611 9.9e-146 520.4 322 78.9
Cc06_g18360 Coffea canephora HOM05D003740 ORTHO05D004611 3.8e-145 518.5 322 80.1
SGA_v2.0_scaffold105G30359 Striga asiatica HOM05D003740 ORTHO05D004611 4.9e-145 518.1 302 85.4
CANSAT80G1359 Cannabis sativa HOM05D003740 ORTHO05D004611 8.4e-145 517.3 322 78.9
CANSAT80G1617 Cannabis sativa HOM05D003740 ORTHO05D004611 8.4e-145 517.3 322 78.9
DCAR_020539 Daucus carota HOM05D003740 ORTHO05D004611 8.4e-145 517.3 314 81.2
Lsat_1_v5_gn_6_15201 Lactuca sativa HOM05D003740 ORTHO05D004611 3.2e-144 515.4 302 84.4
Duzib128G1723 Durio zibethinus HOM05D003740 ORTHO05D004611 2.7e-143 512.3 302 84.4
Sc13g0001500 Simmondsia chinensis HOM05D003740 ORTHO05D004611 3.5e-143 511.9 304 81.9
Rhsim04G0107900 Rhododendron simsii HOM05D003740 ORTHO05D004611 4.6e-143 511.5 323 80.5
Atru.chr1.1193 Acer truncatum HOM05D003740 ORTHO05D004611 2.3e-142 509.2 304 82.9
TAR633G2274 Trochodendron aralioides HOM05D003740 ORTHO05D004611 3.0e-142 508.8 315 81.0
FAN14G5242 Fragaria x ananassa HOM05D003740 ORTHO05D004611 6.6e-142 507.7 304 81.2
Aqoxy2G02041 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 1.5e-141 506.5 322 76.4
TAR636G0750 Trochodendron aralioides HOM05D003740 ORTHO05D004611 1.9e-141 506.1 320 79.7
Os07g0661100 Oryza sativa ssp. japonica HOM05D003740 ORTHO05D004611 4.3e-141 505.0 322 75.2
CSS0009879 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 1.6e-140 503.1 322 79.2
SEGI_04340 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 6.2e-140 501.1 322 74.8
Zm00001eb110840 Zea mays HOM05D003740 ORTHO05D004611 1.4e-139 500.0 322 74.5
Zm00001eb329870 Zea mays HOM05D003740 ORTHO05D004611 2.4e-139 499.2 322 74.8
MBI13_g04792_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 6.9e-139 497.7 302 80.8
Potri.016G042100 Populus trichocarpa HOM05D003740 ORTHO05D004611 1.2e-138 496.9 304 78.9
Nitab4.5_0000826g0260 Nicotiana tabacum HOM05D003740 ORTHO05D004611 4.5e-138 495.0 341 74.8
Duzib106G0923 Durio zibethinus HOM05D003740 ORTHO05D004611 1.6e-132 476.5 322 75.2
SMO364G0515 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 2.1e-132 476.1 322 71.7
TPR.G2316 Trifolium pratense HOM05D003740 ORTHO05D004611 1.4e-131 473.4 322 73.9
Lj2A390G27 Lonicera japonica HOM05D003740 ORTHO05D004611 2.4e-131 472.6 308 78.6
Lj1A1122T44 Lonicera japonica HOM05D003740 ORTHO05D004611 7.6e-130 467.6 322 74.5
SalBow1G2954 Salvia bowleyana HOM05D003740 ORTHO05D004611 1.8e-126 456.4 351 68.7
Pp3c2_18380 Physcomitrium patens HOM05D003740 ORTHO05D004611 6.7e-126 454.5 332 69.9
Sp5g05360 Schrenkiella parvula HOM05D003740 ORTHO05D004611 2.0e-122 443.0 231 97.8
AagrBONN_evm.TU.Sc2ySwM_344.2027 Anthoceros agrestis HOM05D003740 ORTHO05D004611 2.5e-120 436.0 330 67.0
RcHm_v2.0_Chr3g0484421 Rosa chinensis HOM05D003740 ORTHO05D004611 1.6e-119 433.3 386 62.2
CARHR167400 Cardamine hirsuta HOM05D003740 ORTHO05D004611 7.9e-119 431.0 227 97.4
Mapoly0120s0027 Marchantia polymorpha HOM05D003740 ORTHO05D004611 2.3e-118 429.5 329 66.3
Hund19125 Selenicereus undatus HOM05D003740 ORTHO05D004611 2.5e-117 426.0 351 65.8
DCAR_016970 Daucus carota HOM05D003740 ORTHO05D004611 7.4e-117 424.5 309 71.8
ATR0782G053 Amborella trichopoda HOM05D003740 ORTHO05D004611 1.7e-113 413.3 248 82.7
AUR62004393 Chenopodium quinoa HOM05D003740 ORTHO05D004611 9.7e-109 397.5 292 71.2
SMO112G0012 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 6.3e-108 394.8 271 72.3
vmacro09044 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 1.3e-105 387.1 228 83.3
Medtr8g446850 Medicago truncatula HOM05D003740 ORTHO05D004611 3.2e-104 382.5 262 74.8
SHI12878 Sapria himalayana HOM05D003740 ORTHO05D004611 1.0e-102 377.5 321 60.1
AUR62022599 Chenopodium quinoa HOM05D003740 ORTHO05D004611 3.9e-102 375.6 307 65.5
TPR.G11551 Trifolium pratense HOM05D003740 ORTHO05D004611 5.7e-101 371.7 313 66.1
Cre16.g663100 Chlamydomonas reinhardtii HOM05D003740 ORTHO05D004611 1.4e-94 350.5 351 53.3
AagrBONN_evm.TU.Sc2ySwM_368.1663 Anthoceros agrestis HOM05D003740 ORTHO05D004611 5.5e-88 328.6 337 53.1
CiPaw.10G036600 Carya illinoinensis HOM05D003740 ORTHO05D004611 4.0e-86 322.4 198 81.8
PRCOL_00006546 Prasinoderma coloniale HOM05D003740 ORTHO05D004611 2.8e-84 316.2 362 51.4
CBR_g48687 Chara braunii HOM05D003740 ORTHO05D004611 2.7e-82 309.7 267 60.3
SEGI_25729 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 5.2e-78 295.4 196 73.0
Cpa.g.sc120.7 Carica papaya HOM05D003740 ORTHO05D004611 4.4e-69 265.8 151 84.8
SGA_v2.0_scaffold69G23130 Striga asiatica HOM05D003740 ORTHO05D004611 1.7e-65 253.8 248 60.5
MCO05G206 Micromonas commoda HOM05D003740 ORTHO05D004611 1.2e-61 241.1 302 46.7
Aqoxy6G01654 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 6.4e-60 235.3 222 58.1
Haze_26500 Corylus avellana HOM05D003740 ORTHO05D004611 7.0e-59 231.9 366 38.8
Cfa024885 Carpinus fangiana HOM05D003740 ORTHO05D004611 4.4e-53 212.6 304 41.8
AagrBONN_evm.TU.Sc2ySwM_117.4057 Anthoceros agrestis HOM05D003740 ORTHO05D004611 3.3e-48 196.4 182 58.8
Psat6g050760 Pisum sativum HOM05D003740 ORTHO05D018044 1.4e-46 191.0 118 80.5
HPP92_001282 Vanilla planifolia HOM05D003740 ORTHO05D004611 5.8e-45 185.7 190 54.2
Actinidia17677 Actinidia chinensis HOM05D003740 ORTHO05D004611 1.1e-27 128.3 104 61.5
vmacro09045 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 3.2e-27 126.7 75 81.3
MBI05_g15360_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 6.0e-26 122.5 72 80.6
SMO112G0048 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 1.4e-19 101.3 75 65.3
Psat6g009800 Pisum sativum HOM05D003740 ORTHO05D004611 2.1e-18 97.4 61 72.1
Nitab4.5_0001618g0330 Nicotiana tabacum HOM05D003740 ORTHO05D004611 1.5e-16 91.3 54 77.8
TPR.G40499 Trifolium pratense HOM05D003740 ORTHO05D004611 6.5e-12 75.9 60 63.3
Pp3c1_19750 Physcomitrium patens HOM05D003740 ORTHO05D004611 1.1e-11 75.1 123 39.8
Cpa.g.c37387 Carica papaya HOM05D003740 ORTHO05D004611 4.1e-06 56.6 28 89.3
Ah.04g151350 Amaranthus hybridus HOM05D002173 ORTHO05D002189 5.3e-06 56.2 36 72.2


User provided reference genes

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