Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40028 Brassica carinata HOM05D000171 ORTHO05D000101 2.0e-82 308.9 145 100.0
BcaC07g40029 Brassica carinata HOM05D000171 ORTHO05D000101 1.5e-80 302.8 142 100.0
BolC9t57934H Brassica oleracea HOM05D000171 ORTHO05D000101 6.6e-49 197.6 144 72.9
BcaC04g23284 Brassica carinata HOM05D000171 ORTHO05D000101 9.0e-46 187.2 141 69.5
C09p10250 Brassica napus HOM05D000171 ORTHO05D000101 4.4e-45 184.9 142 67.6
BraSC296t45960Z Brassica rapa HOM05D000171 ORTHO05D000101 4.4e-45 184.9 142 69.0
BolC9t53923H Brassica oleracea HOM05D000171 ORTHO05D000101 9.9e-45 183.7 142 67.6
C09p10160 Brassica napus HOM05D000171 ORTHO05D000101 1.5e-40 169.9 112 75.9
BolC9t53915H Brassica oleracea HOM05D000171 ORTHO05D000101 1.3e-39 166.8 112 75.0
BcaC04g23280 Brassica carinata HOM05D000171 ORTHO05D000101 2.8e-39 165.6 131 66.4
BcaNung03037 Brassica carinata HOM05D000171 ORTHO05D000101 4.5e-37 158.3 145 63.4
C09p10210 Brassica napus HOM05D000171 ORTHO05D000101 1.1e-35 153.7 113 69.0
CARHR276420 Cardamine hirsuta HOM05D000171 ORTHO05D000101 7.4e-32 141.0 148 52.0
BcaB04g21422 Brassica carinata HOM05D000635 ORTHO05D000101 4.8e-31 138.3 87 75.9
C02p62250 Brassica napus HOM05D004904 ORTHO05D000101 2.4e-30 136.0 150 51.3
Carub.0008s2336 Capsella rubella HOM05D000171 ORTHO05D000101 5.3e-30 134.8 151 53.0
CARHR276200 Cardamine hirsuta HOM05D000171 ORTHO05D000101 6.9e-30 134.4 149 50.3
AL8G39600 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 3.4e-29 132.1 114 58.8
Carub.0008s2318 Capsella rubella HOM05D000171 ORTHO05D000101 4.5e-29 131.7 146 50.7
CARHR276430 Cardamine hirsuta HOM05D000171 ORTHO05D000101 9.9e-29 130.6 143 49.0
Thhalv10004411m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 7.1e-27 124.4 149 49.7
AL8G39570 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 9.3e-27 124.0 151 48.3
AT5G62510 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 3.5e-26 122.1 150 46.7
BolC2t12282H Brassica oleracea HOM05D000171 ORTHO05D000101 4.6e-26 121.7 145 49.0
Carub.0008s2334 Capsella rubella HOM05D000171 ORTHO05D000101 4.6e-26 121.7 148 49.3
AL8G39540 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 6.0e-26 121.3 116 54.3
Thhalv10005275m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 6.0e-26 121.3 150 48.7
AT5G62660 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 1.3e-25 120.2 103 59.2
Carub.0008s2333 Capsella rubella HOM05D000171 ORTHO05D000101 6.7e-25 117.9 148 48.0
Thhalv10028181m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 7.4e-24 114.4 155 47.1
Carub.0004s2322 Capsella rubella HOM05D000171 ORTHO05D000101 1.8e-22 109.8 158 44.3
AT2G40920 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 4.0e-22 108.6 157 43.9
Thhalv10005666m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 4.0e-22 108.6 153 43.8
AL4G38860 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 6.9e-22 107.8 145 46.2
Carub.0008s2317 Capsella rubella HOM05D000171 ORTHO05D000101 1.5e-21 106.7 146 41.8
C03p27370 Brassica napus HOM05D000171 ORTHO05D000101 3.5e-18 95.5 129 45.7
BolC3t15117H Brassica oleracea HOM05D000171 ORTHO05D000101 3.5e-18 95.5 129 45.7
BcaB01g03499 Brassica carinata HOM05D000171 ORTHO05D000101 4.6e-18 95.1 156 39.7
Sp4g23370 Schrenkiella parvula HOM05D000171 ORTHO05D000101 4.6e-18 95.1 151 42.4
AL8G39400 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.0e-17 94.0 90 52.2
BcaC01g05366 Brassica carinata HOM05D000171 ORTHO05D000101 1.8e-17 93.2 129 45.0
AL4G38850 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 6.7e-17 91.3 156 38.5
BraA02t06939Z Brassica rapa HOM05D000171 ORTHO05D000101 6.7e-17 91.3 154 39.0
C02p31520 Brassica napus HOM05D000171 ORTHO05D000101 8.7e-17 90.9 155 39.4
Carub.0001s4456 Capsella rubella HOM05D000171 ORTHO05D000101 8.7e-17 90.9 147 40.8
A02p18980 Brassica napus HOM05D000171 ORTHO05D000101 1.1e-16 90.5 155 39.4
CARHR049150 Cardamine hirsuta HOM05D000171 ORTHO05D000101 1.1e-16 90.5 123 43.1
BcaB01g03501 Brassica carinata HOM05D000171 ORTHO05D000101 1.5e-16 90.1 122 43.4
AL4G31270 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.9e-16 89.7 151 38.4
Thhalv10011525m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 2.5e-16 89.4 156 39.1
Thhalv10012025m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 2.5e-16 89.4 156 39.1
A03p23050 Brassica napus HOM05D000171 ORTHO05D000101 3.3e-16 89.0 124 43.5
BraA03t11528Z Brassica rapa HOM05D000171 ORTHO05D000101 3.3e-16 89.0 124 43.5
AT2G40910 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 4.3e-16 88.6 132 40.9
BcaB01g03500 Brassica carinata HOM05D000171 ORTHO05D000101 4.3e-16 88.6 155 39.4
Carub.0008s2338 Capsella rubella HOM05D000171 ORTHO05D000101 4.3e-16 88.6 70 60.0
Thhalv10005397m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 4.3e-16 88.6 132 42.4
BolC3t15121H Brassica oleracea HOM05D000171 ORTHO05D000101 5.7e-16 88.2 145 38.6
C03p27440 Brassica napus HOM05D000171 ORTHO05D000101 7.4e-16 87.8 145 38.6
BcaC01g05368 Brassica carinata HOM05D000171 ORTHO05D000101 9.7e-16 87.4 122 43.4
C03p27380 Brassica napus HOM05D000171 ORTHO05D000101 2.8e-15 85.9 122 42.6
BolC3t15119H Brassica oleracea HOM05D000171 ORTHO05D000101 2.8e-15 85.9 122 42.6
Carub.0004s2438 Capsella rubella HOM05D000171 ORTHO05D000101 6.3e-15 84.7 156 37.2
BcaC02g07628 Brassica carinata HOM05D000171 ORTHO05D000101 8.2e-15 84.3 133 36.8
Carub.0003s3064 Capsella rubella HOM05D000171 ORTHO05D000101 1.4e-14 83.6 122 41.0
CARHR276410 Cardamine hirsuta HOM05D000171 ORTHO05D000101 1.4e-14 83.6 84 51.2
BraA02t06948Z Brassica rapa HOM05D000171 ORTHO05D000101 1.8e-14 83.2 133 39.8
AT2G40925 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 3.1e-14 82.4 97 47.4
Carub.0003s3063 Capsella rubella HOM05D000171 ORTHO05D000101 6.9e-14 81.3 158 38.0
BraA08t32678Z Brassica rapa HOM05D000171 ORTHO05D000101 9.0e-14 80.9 157 36.3
AL4G38870 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.2e-13 80.5 96 44.8
BcaC08g43649 Brassica carinata HOM05D000171 ORTHO05D000101 1.2e-13 80.5 157 36.3
BcaB03g13267 Brassica carinata HOM05D000171 ORTHO05D000101 1.5e-13 80.1 153 38.6
C06p10670 Brassica napus HOM05D000171 ORTHO05D000101 1.5e-13 80.1 157 36.3
BolC6t36149H Brassica oleracea HOM05D000171 ORTHO05D000101 1.5e-13 80.1 157 36.3
CARHR136020 Cardamine hirsuta HOM05D000171 ORTHO05D000101 1.5e-13 80.1 114 41.2
BcaC07g38624 Brassica carinata HOM05D000171 ORTHO05D000101 2.0e-13 79.7 153 37.3
BcaC03g15472 Brassica carinata HOM05D000171 ORTHO05D000101 2.6e-13 79.3 150 36.0
BcaC04g19915 Brassica carinata HOM05D000171 ORTHO05D000101 3.4e-13 79.0 154 37.7
BcaC04g20172 Brassica carinata HOM05D000171 ORTHO05D000101 3.4e-13 79.0 154 37.7
A02p19000 Brassica napus HOM05D000171 ORTHO05D000101 4.5e-13 78.6 102 43.1
Thhalv10016561m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 5.9e-13 78.2 127 37.8
CARHR210940 Cardamine hirsuta HOM05D000171 ORTHO05D000101 7.7e-13 77.8 117 38.5
Sp1g09440 Schrenkiella parvula HOM05D000171 ORTHO05D000101 1.3e-12 77.0 153 36.6
BraA10t43382Z Brassica rapa HOM05D000171 ORTHO05D000101 1.7e-12 76.6 154 36.4
Carub.0007s2126 Capsella rubella HOM05D000171 ORTHO05D000101 2.2e-12 76.3 143 35.7
CARHR264750 Cardamine hirsuta HOM05D000171 ORTHO05D000101 2.2e-12 76.3 72 50.0
Sp1g05850 Schrenkiella parvula HOM05D000171 ORTHO05D000101 2.2e-12 76.3 131 36.6
AL7G33990 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 2.9e-12 75.9 158 33.5
BcaC07g38647 Brassica carinata HOM05D000171 ORTHO05D000101 2.9e-12 75.9 121 42.1
BolC8t49058H Brassica oleracea HOM05D000171 ORTHO05D000101 2.9e-12 75.9 121 42.1
AL8G39590 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 3.8e-12 75.5 63 54.0
C08p14200 Brassica napus HOM05D000171 ORTHO05D000101 3.8e-12 75.5 121 42.1
CARHR182090 Cardamine hirsuta HOM05D000171 ORTHO05D000101 3.8e-12 75.5 158 36.7
AL3G47620 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 5.0e-12 75.1 158 35.4
BcaB06g26495 Brassica carinata HOM05D000171 ORTHO05D000101 6.5e-12 74.7 158 36.1
Carub.0005s0876 Capsella rubella HOM05D000171 ORTHO05D000101 6.5e-12 74.7 129 35.7
AT1G55947 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 1.1e-11 73.9 130 38.5
BolC8t49012H Brassica oleracea HOM05D000171 ORTHO05D000101 1.1e-11 73.9 151 37.1
CARHR226260 Cardamine hirsuta HOM05D000171 ORTHO05D000101 2.5e-11 72.8 146 34.2
A08p33570 Brassica napus HOM05D000171 ORTHO05D000101 5.5e-11 71.6 121 40.5
BolC4t27998H Brassica oleracea HOM05D000748 ORTHO05D000101 7.2e-11 71.2 89 40.4
BraA08t32091Z Brassica rapa HOM05D000171 ORTHO05D000101 9.4e-11 70.9 132 35.6
Thhalv10025237m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 1.2e-10 70.5 144 34.0
C03p93170 Brassica napus HOM05D000171 ORTHO05D000101 1.6e-10 70.1 132 35.6
BraA08t35273Z Brassica rapa HOM05D000171 ORTHO05D000101 2.7e-10 69.3 121 39.7
CARHR226700 Cardamine hirsuta HOM05D000171 ORTHO05D000101 6.1e-10 68.2 124 35.5
A02p18970 Brassica napus HOM05D000171 ORTHO05D000101 7.9e-10 67.8 94 40.4
BcaC01g01564 Brassica carinata HOM05D000171 ORTHO05D000101 3.0e-09 65.9 132 34.1
BolC3t21616H Brassica oleracea HOM05D000171 ORTHO05D000101 3.0e-09 65.9 132 34.1
BcaB01g03496 Brassica carinata HOM05D000171 ORTHO05D000101 1.5e-08 63.5 65 53.8
BcaNung02552 Brassica carinata HOM05D000171 ORTHO05D000101 4.3e-08 62.0 137 33.6
BcaNung02553 Brassica carinata HOM05D000171 ORTHO05D000101 5.7e-08 61.6 164 31.1
BcaB03g11646 Brassica carinata HOM05D000171 ORTHO05D000101 1.3e-07 60.5 165 30.9
BcaB04g16928 Brassica carinata HOM05D000171 ORTHO05D000101 2.2e-07 59.7 110 35.5
BolC7t45552H Brassica oleracea HOM05D000171 ORTHO05D000101 2.2e-07 59.7 137 32.8
C09p47030 Brassica napus HOM05D000171 ORTHO05D000101 2.8e-07 59.3 71 43.7
AL7G44280 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 8.2e-07 57.8 114 32.5
BcaB03g11650 Brassica carinata HOM05D000171 ORTHO05D000101 1.4e-06 57.0 164 29.9
AL3G49550 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 2.4e-06 56.2 77 40.3
CARHR257640 Cardamine hirsuta HOM05D000171 ORTHO05D000101 2.4e-06 56.2 50 54.0
Thhalv10008003m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 2.4e-06 56.2 150 30.7
AL5G33270 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 6.9e-06 54.7 157 29.9
AL1G49450 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 9.1e-06 54.3 121 33.1


User provided reference genes

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