Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39992 Brassica carinata HOM05D006876 ORTHO05D008708 4.4e-135 484.6 236 100.0
C08p32050 Brassica napus HOM05D006876 ORTHO05D008708 3.0e-131 471.9 236 98.3
A09p49640 Brassica napus HOM05D006876 ORTHO05D008708 6.6e-123 444.1 243 92.6
BolC8t50823H Brassica oleracea HOM05D006876 ORTHO05D008708 8.1e-121 437.2 214 99.5
BraA09t40417Z Brassica rapa HOM05D006876 ORTHO05D008708 4.2e-117 424.9 221 95.5
BcaC07g40117 Brassica carinata HOM05D006876 ORTHO05D008708 1.0e-107 393.7 216 89.4
Sp5g05770 Schrenkiella parvula HOM05D006876 ORTHO05D008708 1.8e-104 382.9 220 85.5
Carub.0005s2355 Capsella rubella HOM05D006876 ORTHO05D008708 3.5e-100 368.6 220 81.8
Thhalv10006232m.g Eutrema salsugineum HOM05D006876 ORTHO05D008708 7.9e-100 367.5 219 81.7
AL5G38200 Arabidopsis lyrata HOM05D006876 ORTHO05D008708 4.3e-98 361.7 219 81.7
Aa31LG10G11670 Aethionema arabicum HOM05D006876 ORTHO05D008708 2.0e-95 352.8 215 79.1
CARHR166970 Cardamine hirsuta HOM05D006876 ORTHO05D008708 4.5e-95 351.7 221 80.5
AT3G56820 Arabidopsis thaliana HOM05D006876 ORTHO05D008708 8.4e-94 347.4 221 79.2
THA.LOC104803253 Tarenaya hassleriana HOM05D006876 ORTHO05D008708 4.6e-84 315.1 221 70.1
Cpa.g.sc33.174 Carica papaya HOM05D006876 ORTHO05D008708 3.4e-71 272.3 227 60.8
MELO3C019167.2 Cucumis melo HOM05D006876 ORTHO05D008708 6.5e-70 268.1 202 63.4
Peaxi162Scf00003g05358 Petunia axillaris HOM05D006876 ORTHO05D008708 4.2e-69 265.4 232 59.9
ClCG04G005040 Citrullus lanatus HOM05D006876 ORTHO05D008708 7.2e-69 264.6 205 63.4
CsaV3_4G029000 Cucumis sativus L. HOM05D006876 ORTHO05D008708 1.2e-68 263.8 202 63.4
Nitab4.5_0000123g0090 Nicotiana tabacum HOM05D006876 ORTHO05D008708 7.9e-68 261.2 234 59.0
Prupe.7G023500 Prunus persica HOM05D006876 ORTHO05D008708 1.0e-67 260.8 233 59.2
MD12G1111100 Malus domestica HOM05D006876 ORTHO05D008708 1.8e-67 260.0 225 57.3
CiPaw.09G161500 Carya illinoinensis HOM05D006876 ORTHO05D008708 3.0e-67 259.2 208 61.1
CSS0024544 Camellia sinensis var. sinensis HOM05D006876 ORTHO05D008708 6.7e-67 258.1 219 58.9
Sopen10g028620 Solanum pennellii HOM05D006876 ORTHO05D008708 1.1e-66 257.3 240 57.1
Solyc10g076930.2 Solanum lycopersicum HOM05D006876 ORTHO05D008708 2.0e-66 256.5 240 57.5
Nitab4.5_0002131g0070 Nicotiana tabacum HOM05D006876 ORTHO05D008708 9.7e-66 254.2 243 57.6
Sed0006068 Sechium edule HOM05D006876 ORTHO05D008708 2.8e-65 252.7 201 61.7
PGSC0003DMG400007191 Solanum tuberosum HOM05D006876 ORTHO05D008708 3.7e-65 252.3 244 55.7
Ah.13g077470 Amaranthus hybridus HOM05D006876 ORTHO05D008708 8.2e-65 251.1 234 54.3
Potri.006G026300 Populus trichocarpa HOM05D006876 ORTHO05D008708 8.2e-65 251.1 227 59.0
RcHm_v2.0_Chr7g0183121 Rosa chinensis HOM05D006876 ORTHO05D008708 1.1e-64 250.8 248 52.4
Atru.chr8.919 Acer truncatum HOM05D006876 ORTHO05D008708 1.4e-64 250.4 224 57.6
Dinv13650 Davidia involucrata HOM05D006876 ORTHO05D008708 1.4e-64 250.4 213 59.6
Manes.09G001600 Manihot esculenta HOM05D006876 ORTHO05D008708 1.8e-64 250.0 228 57.9
PSO339G4949 Papaver somniferum HOM05D006876 ORTHO05D008708 1.8e-64 250.0 238 52.9
PSO384G4569 Papaver somniferum HOM05D006876 ORTHO05D008708 2.4e-64 249.6 204 58.3
Ciclev10012641m.g Citrus clementina HOM05D006876 ORTHO05D008708 5.3e-64 248.4 232 54.7
EL10Ac3g07376 Beta vulgaris HOM05D006876 ORTHO05D008708 9.1e-64 247.7 230 55.2
Thecc.05G117700 Theobroma cacao HOM05D006876 ORTHO05D008708 1.2e-63 247.3 228 57.0
FAN19G1913 Fragaria x ananassa HOM05D006876 ORTHO05D008708 1.5e-63 246.9 231 54.5
Sabra06G0019500 Salix brachista HOM05D006876 ORTHO05D008708 2.0e-63 246.5 227 58.1
RhsimUnG0021300 Rhododendron simsii HOM05D006876 ORTHO05D008708 7.7e-63 244.6 206 61.2
GSVIVG01025828001 Vitis vinifera HOM05D006876 ORTHO05D008708 7.7e-63 244.6 227 55.9
Lsat_1_v5_gn_6_24200 Lactuca sativa HOM05D006876 ORTHO05D008708 1.0e-62 244.2 216 57.9
QL07p015416 Quercus lobata HOM05D006876 ORTHO05D008708 1.0e-62 244.2 227 57.3
Sc19g0007790 Simmondsia chinensis HOM05D006876 ORTHO05D008708 1.7e-62 243.4 225 54.2
MSTRG.10760 Avicennia marina HOM05D006876 ORTHO05D008708 3.8e-62 242.3 237 54.0
FAN28G2491 Fragaria x ananassa HOM05D006876 ORTHO05D008708 3.8e-62 242.3 231 54.1
TWI53G1364 Tripterygium wilfordii HOM05D006876 ORTHO05D008708 5.0e-62 241.9 232 54.3
CANSAT78G2074 Cannabis sativa HOM05D006876 ORTHO05D008708 6.5e-62 241.5 200 59.5
Hma1.2p1_0694F.1_g204340 Hydrangea macrophylla HOM05D006876 ORTHO05D008708 6.5e-62 241.5 230 51.7
Lalb_Chr24g0400801 Lupinus albus HOM05D006876 ORTHO05D008708 8.5e-62 241.1 208 57.7
Cfa019902 Carpinus fangiana HOM05D006876 ORTHO05D008708 1.1e-61 240.7 201 60.2
arahy.Tifrunner.gnm1.ann1.SXUX32 Arachis hypogaea HOM05D006876 ORTHO05D008708 1.9e-61 240.0 213 56.3
arahy.Tifrunner.gnm1.ann1.U8TZLL Arachis hypogaea HOM05D006876 ORTHO05D008708 1.9e-61 240.0 213 56.3
Hund24486 Selenicereus undatus HOM05D006876 ORTHO05D008708 7.2e-61 238.0 229 55.0
COL.COLO4_21445 Corchorus olitorius HOM05D006876 ORTHO05D008708 1.6e-60 236.9 233 53.2
Eucgr.K01704 Eucalyptus grandis HOM05D006876 ORTHO05D008708 1.6e-60 236.9 222 55.9
vmacro07595 Vaccinium macrocarpon HOM05D006876 ORTHO05D008708 2.1e-60 236.5 229 55.9
Lj1g0024709 Lotus japonicus HOM05D006876 ORTHO05D008708 2.7e-60 236.1 214 58.9
PGR142G2444 Punica granatum HOM05D006876 ORTHO05D008708 6.1e-60 235.0 221 57.5
AUR62020968 Chenopodium quinoa HOM05D006876 ORTHO05D008708 1.0e-59 234.2 223 52.9
Cc06_g21190 Coffea canephora HOM05D006876 ORTHO05D008708 1.8e-59 233.4 204 56.4
MBI19_g10813_MAGBIO Magnolia biondii HOM05D006876 ORTHO05D008708 6.7e-59 231.5 225 52.9
Duzib114G0933 Durio zibethinus HOM05D006876 ORTHO05D008708 1.5e-58 230.3 233 54.5
Gohir.D13G092600 Gossypium hirsutum HOM05D006876 ORTHO05D008708 2.0e-58 229.9 234 52.1
SGA_v2.0_scaffold123G33492 Striga asiatica HOM05D001269 ORTHO05D001083 2.0e-58 229.9 239 51.9
Migut.K00190 Erythranthe guttata HOM05D006876 ORTHO05D008708 2.6e-58 229.6 202 57.9
SalBow1G4764 Salvia bowleyana HOM05D006876 ORTHO05D008708 4.4e-58 228.8 207 55.6
Gohir.A13G086570 Gossypium hirsutum HOM05D006876 ORTHO05D008708 3.7e-57 225.7 230 51.7
Hund24492 Selenicereus undatus HOM05D006876 ORTHO05D008708 1.1e-56 224.2 216 55.6
Medtr7g088040 Medicago truncatula HOM05D006876 ORTHO05D008708 5.3e-56 221.9 204 54.4
Gorai.010G139600 Gossypium raimondii HOM05D006876 ORTHO05D008708 7.0e-56 221.5 238 50.4
Os01g0810200 Oryza sativa ssp. japonica HOM05D006876 ORTHO05D008708 9.1e-56 221.1 239 50.6
VMungo1383G0045 Vigna mungo HOM05D006876 ORTHO05D008708 9.1e-56 221.1 213 54.5
unitig_899.g15477 Utricularia gibba HOM05D006876 ORTHO05D008708 1.2e-55 220.7 234 50.4
Phvul.001G101300 Phaseolus vulgaris HOM05D006876 ORTHO05D008708 2.0e-55 219.9 217 52.5
Migut.K00192 Erythranthe guttata HOM05D006876 ORTHO05D008708 1.7e-54 216.9 197 56.3
Aqoxy1G01501 Aquilegia oxysepala HOM05D006876 ORTHO05D008708 2.2e-54 216.5 223 52.5
Zm00001eb150270 Zea mays HOM05D006876 ORTHO05D008708 2.2e-54 216.5 238 48.7
Haze_20349 Corylus avellana HOM05D006876 ORTHO05D008708 1.5e-53 213.8 229 51.1
Glyma.19G122400 Glycine max HOM05D006876 ORTHO05D008708 3.2e-53 212.6 195 51.8
Nn7g37203 Nelumbo nucifera HOM05D006876 ORTHO05D008708 2.1e-52 209.9 210 51.9
Glyma.03G003700 Glycine max HOM05D006876 ORTHO05D008708 3.6e-52 209.1 195 51.8
arahy.Tifrunner.gnm1.ann1.R6YTNA Arachis hypogaea HOM05D006876 ORTHO05D008708 1.5e-50 203.8 200 52.0
TAR623G1567 Trochodendron aralioides HOM05D006876 ORTHO05D008708 6.3e-49 198.4 151 60.9
Aqoxy1G01505 Aquilegia oxysepala HOM05D006876 ORTHO05D008708 1.2e-47 194.1 131 67.2
Psat3g083640 Pisum sativum HOM05D006876 ORTHO05D008708 3.8e-46 189.1 135 63.0
ATR1096G134 Amborella trichopoda HOM05D006876 ORTHO05D008708 8.5e-46 188.0 199 49.2
DCAR_020618 Daucus carota HOM05D006876 ORTHO05D008708 1.8e-43 180.3 110 73.6
Lj4A828G46 Lonicera japonica HOM05D006876 ORTHO05D008708 2.6e-42 176.4 118 66.9
SEGI_40976 Sequoiadendron giganteum HOM05D006876 ORTHO05D008708 9.8e-42 174.5 137 59.1
ECA233G0065 Erigeron canadensis HOM05D000444 ORTHO05D000489 3.5e-39 166.0 108 67.6
Hma1.2p1_0694F.1_g204350 Hydrangea macrophylla HOM05D006876 ORTHO05D008708 4.5e-39 165.6 108 67.6
Oeu032953.2 Olea europaea HOM05D006876 ORTHO05D008708 1.7e-38 163.7 296 38.5
FvH4_1g29600 Fragaria vesca HOM05D006876 ORTHO05D008708 3.8e-38 162.5 164 50.0
CSS0021314 Camellia sinensis var. sinensis HOM05D006876 ORTHO05D008708 6.6e-38 161.8 109 67.0
QL05p001451 Quercus lobata HOM05D006876 ORTHO05D008708 1.1e-32 144.4 93 72.0
Lalb_Chr02g0157641 Lupinus albus HOM05D006876 ORTHO05D008708 1.3e-30 137.5 176 44.3
arahy.Tifrunner.gnm1.ann1.S4H51W Arachis hypogaea HOM05D006876 ORTHO05D008708 2.5e-29 133.3 135 48.1
Actinidia37859 Actinidia chinensis HOM05D006876 ORTHO05D008708 3.3e-29 132.9 87 72.4
arahy.Tifrunner.gnm1.ann1.8Z6XIB Arachis hypogaea HOM05D006876 ORTHO05D008708 2.9e-25 119.8 77 66.2
arahy.Tifrunner.gnm1.ann1.QI3NWI Arachis hypogaea HOM05D006876 ORTHO05D008708 1.1e-24 117.9 76 64.5
CBR_g17867 Chara braunii HOM05D006876 ORTHO05D008708 1.0e-22 111.3 118 44.9
arahy.Tifrunner.gnm1.ann1.ERVJ4V Arachis hypogaea HOM05D006876 ORTHO05D008708 1.5e-21 107.5 184 34.8
QL05p001731 Quercus lobata HOM05D006876 ORTHO05D008708 8.3e-17 91.7 69 71.0
QL05p085390 Quercus lobata HOM05D006876 ORTHO05D008708 8.3e-17 91.7 69 71.0
Oeu007164.1 Olea europaea HOM05D006876 ORTHO05D008708 2.4e-16 90.1 71 56.3
MCO02G060 Micromonas commoda HOM05D006876 ORTHO05D008708 5.4e-16 89.0 131 36.6
Ca_08331_v3 Cicer arietinum L. HOM05D006876 ORTHO05D008708 5.1e-14 82.4 68 60.3
arahy.Tifrunner.gnm1.ann1.Q5BN79 Arachis hypogaea HOM05D006876 ORTHO05D008708 8.6e-14 81.6 57 61.4
DCAR_020619 Daucus carota HOM05D006876 ORTHO05D008708 2.5e-13 80.1 107 43.9
C06p23790 Brassica napus HOM05D006876 ORTHO05D040197 7.3e-13 78.6 64 65.6
BolC6t37548H Brassica oleracea HOM05D006876 ORTHO05D040197 7.3e-13 78.6 64 65.6
Oeu039192.1 Olea europaea HOM05D006876 ORTHO05D008708 2.6e-10 70.1 103 44.7
Glyma.10G143650 Glycine max HOM05D006876 ORTHO05D008708 7.6e-10 68.6 43 62.8
HPP92_016900 Vanilla planifolia HOM05D006876 ORTHO05D008708 8.6e-06 55.1 95 35.8


User provided reference genes

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