Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39991 Brassica carinata HOM05D009749 ORTHO05D008033 2.9e-185 651.7 332 100.0
BolC8t50822H Brassica oleracea HOM05D009749 ORTHO05D008033 2.9e-185 651.7 332 100.0
C08p32040 Brassica napus HOM05D009749 ORTHO05D008033 1.5e-181 639.4 332 98.8
A09p49630 Brassica napus HOM05D009749 ORTHO05D008033 2.4e-171 605.5 332 92.8
BraA09t40416Z Brassica rapa HOM05D009749 ORTHO05D008033 2.4e-171 605.5 332 92.8
Sp5g05780 Schrenkiella parvula HOM05D009749 ORTHO05D008033 2.7e-146 522.3 335 80.9
BolC4t25234H Brassica oleracea HOM05D009749 ORTHO05D008033 1.6e-135 486.5 342 75.4
A04p03560 Brassica napus HOM05D009749 ORTHO05D008033 2.1e-135 486.1 335 76.7
C04p35700 Brassica napus HOM05D009749 ORTHO05D008033 2.8e-135 485.7 335 76.7
BcaC07g40118 Brassica carinata HOM05D009749 ORTHO05D008033 2.2e-132 476.1 342 78.9
BolC6t37547H Brassica oleracea HOM05D009749 ORTHO05D008033 1.9e-128 463.0 334 74.9
AL5G38190 Arabidopsis lyrata HOM05D009749 ORTHO05D008033 6.2e-127 458.0 339 75.2
BcaC08g44807 Brassica carinata HOM05D009749 ORTHO05D008033 2.4e-126 456.1 334 74.3
BcaB02g08346 Brassica carinata HOM05D009749 ORTHO05D008033 4.0e-126 455.3 336 75.3
BraA04t16080Z Brassica rapa HOM05D009749 ORTHO05D008033 6.9e-126 454.5 337 72.7
C06p23780 Brassica napus HOM05D009749 ORTHO05D008033 2.2e-124 449.5 334 73.7
AT3G56810 Arabidopsis thaliana HOM05D009749 ORTHO05D008033 1.9e-123 446.4 341 73.0
A07p23080 Brassica napus HOM05D009749 ORTHO05D008033 6.7e-121 438.0 338 71.9
BraA07t29970Z Brassica rapa HOM05D009749 ORTHO05D008033 6.7e-121 438.0 338 71.9
BcaB02g07636 Brassica carinata HOM05D009749 ORTHO05D008033 6.2e-119 431.4 334 72.2
CARHR166960 Cardamine hirsuta HOM05D009749 ORTHO05D008033 1.4e-118 430.3 342 72.5
Carub.0005s2354 Capsella rubella HOM05D009749 ORTHO05D008033 1.3e-108 397.1 343 67.9
BcaC02g09872 Brassica carinata HOM05D009749 ORTHO05D008033 2.2e-92 343.2 262 71.4
Thhalv10006250m.g Eutrema salsugineum HOM05D009749 ORTHO05D008033 1.5e-59 234.2 183 69.9
Thhalv10006450m.g Eutrema salsugineum HOM05D009749 ORTHO05D008033 9.5e-51 204.9 157 73.9
THA.LOC104803305 Tarenaya hassleriana HOM05D009749 ORTHO05D008033 3.1e-49 199.9 328 45.4
Aa31LG10G11650 Aethionema arabicum HOM05D009749 ORTHO05D008033 2.5e-35 153.7 142 63.4
Atru.chr8.918 Acer truncatum HOM05D007667 ORTHO05D008033 1.1e-14 85.1 352 29.3
CiPaw.09G161700 Carya illinoinensis HOM05D007667 ORTHO05D008033 6.7e-12 75.9 401 27.4
CANSAT01G1982 Cannabis sativa HOM05D007667 ORTHO05D008033 2.5e-11 73.9 261 26.4
MD12G1111200 Malus domestica HOM05D007667 ORTHO05D008033 2.5e-11 73.9 242 30.2
Sabra16G0030500 Salix brachista HOM05D007667 ORTHO05D008033 1.3e-10 71.6 227 28.2
PGR142G2092 Punica granatum HOM05D007667 ORTHO05D008033 4.8e-10 69.7 333 27.9
Potri.016G024600 Populus trichocarpa HOM05D007667 ORTHO05D008033 6.2e-10 69.3 229 27.5
Glyma.03G003800 Glycine max HOM05D007667 ORTHO05D008033 1.4e-09 68.2 334 25.1
Phvul.001G101500 Phaseolus vulgaris HOM05D007667 ORTHO05D008033 1.4e-09 68.2 345 25.5
Medtr7g087970 Medicago truncatula HOM05D007667 ORTHO05D008033 4.0e-09 66.6 383 24.5
VMungo1383G2866 Vigna mungo HOM05D007667 ORTHO05D008033 4.0e-09 66.6 242 29.3
Eucgr.K01702 Eucalyptus grandis HOM05D007667 ORTHO05D008033 6.9e-09 65.9 285 25.6
arahy.Tifrunner.gnm1.ann1.2JVN0K Arachis hypogaea HOM05D007667 ORTHO05D008033 9.0e-09 65.5 354 26.6
Duzib128G0300 Durio zibethinus HOM05D007667 ORTHO05D008033 9.0e-09 65.5 320 24.1
Glyma.19G122200 Glycine max HOM05D007667 ORTHO05D008033 9.0e-09 65.5 347 26.2
Manes.08G067300 Manihot esculenta HOM05D007667 ORTHO05D008033 1.2e-08 65.1 233 28.8
GSVIVG01025830001 Vitis vinifera HOM05D007667 ORTHO05D008033 2.0e-08 64.3 285 24.9
SalBow6G3030 Salvia bowleyana HOM05D007667 ORTHO05D008033 2.6e-08 63.9 96 37.5
SalBow6G3731 Salvia bowleyana HOM05D007667 ORTHO05D008033 2.6e-08 63.9 96 37.5
Psat0s3111g0200 Pisum sativum HOM05D007667 ORTHO05D008033 3.4e-08 63.5 343 24.5
arahy.Tifrunner.gnm1.ann1.B2YDCU Arachis hypogaea HOM05D007667 ORTHO05D008033 5.8e-08 62.8 203 28.1
Cfa019904 Carpinus fangiana HOM05D007667 ORTHO05D008033 7.6e-08 62.4 376 25.3
Ciclev10012153m.g Citrus clementina HOM05D007667 ORTHO05D008033 1.3e-07 61.6 194 29.9
Sabra06G0019700 Salix brachista HOM05D007667 ORTHO05D008033 1.7e-07 61.2 216 28.7
SGA_v2.0_scaffold66G22329 Striga asiatica HOM05D007667 ORTHO05D008033 2.2e-07 60.8 252 25.8
Haze_20347 Corylus avellana HOM05D007667 ORTHO05D008033 2.9e-07 60.5 241 24.5
Migut.J01575 Erythranthe guttata HOM05D007667 ORTHO05D008033 2.9e-07 60.5 253 27.3
CSS0027019 Camellia sinensis var. sinensis HOM05D007667 ORTHO05D008033 1.1e-06 58.5 278 27.3
DCAR_020622 Daucus carota HOM05D007667 ORTHO05D008033 1.4e-06 58.2 109 34.9
Potri.006G026600 Populus trichocarpa HOM05D007667 ORTHO05D008033 1.4e-06 58.2 211 26.1
vmacro07594 Vaccinium macrocarpon HOM05D007667 ORTHO05D008033 1.4e-06 58.2 282 26.6
RhsimUnG0021200 Rhododendron simsii HOM05D007667 ORTHO05D008033 1.9e-06 57.8 255 26.7
MSTRG.6277 Avicennia marina HOM05D007667 ORTHO05D008033 2.5e-06 57.4 279 25.4
Thecc.05G130400 Theobroma cacao HOM05D007667 ORTHO05D008033 2.5e-06 57.4 337 24.6
Lalb_Chr14g0365211 Lupinus albus HOM05D007667 ORTHO05D008033 4.2e-06 56.6 219 25.1
COL.COLO4_22773 Corchorus olitorius HOM05D007667 ORTHO05D008033 5.5e-06 56.2 272 27.2
MELO3C030720.2 Cucumis melo HOM05D007667 ORTHO05D008033 7.1e-06 55.8 270 22.6
Ah.13g077440 Amaranthus hybridus HOM05D007667 ORTHO05D008033 9.3e-06 55.5 425 23.8
RcHm_v2.0_Chr3g0495051 Rosa chinensis HOM05D007667 ORTHO05D008033 9.3e-06 55.5 252 26.2


User provided reference genes

Program Settings