Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39982 Brassica carinata HOM05D004518 ORTHO05D005434 3.0e-157 558.5 294 100.0
BolC8t50814H Brassica oleracea HOM05D004518 ORTHO05D005434 1.4e-154 549.7 306 96.1
BcaC07g40121 Brassica carinata HOM05D004518 ORTHO05D005434 5.9e-153 544.3 294 96.9
A09p49580 Brassica napus HOM05D004518 ORTHO05D005434 1.1e-151 540.0 306 94.4
BraA09t40411Z Brassica rapa HOM05D004518 ORTHO05D005434 1.1e-151 540.0 306 94.4
C08p31960 Brassica napus HOM05D004518 ORTHO05D005434 3.9e-149 531.6 305 94.1
Carub.0005s2348 Capsella rubella HOM05D004518 ORTHO05D005434 1.1e-148 530.0 294 94.2
AT3G56740 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 1.9e-148 529.3 294 93.9
CARHR166870 Cardamine hirsuta HOM05D004518 ORTHO05D005434 4.3e-148 528.1 294 92.9
Thhalv10006131m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 1.6e-147 526.2 294 93.2
Sp5g05830 Schrenkiella parvula HOM05D004518 ORTHO05D005434 1.1e-146 523.5 294 93.9
AL5G38100 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 1.4e-146 523.1 294 92.9
Aa31LG10G11580 Aethionema arabicum HOM05D004518 ORTHO05D005434 6.9e-138 494.2 294 87.8
THA.LOC104803258 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 6.1e-126 454.5 296 82.1
THA.LOC104824396 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 1.4e-125 453.4 297 82.2
Thhalv10017035m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 4.4e-124 448.4 295 82.4
Sp4g23460 Schrenkiella parvula HOM05D004518 ORTHO05D005434 4.4e-124 448.4 295 82.7
RcHm_v2.0_Chr2g0125741 Rosa chinensis HOM05D004518 ORTHO05D005434 9.1e-122 440.7 294 76.9
Prupe.7G034400 Prunus persica HOM05D004518 ORTHO05D005434 3.8e-120 435.3 294 77.6
AL4G39130 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 5.0e-120 434.9 294 79.3
BraA05t19203Z Brassica rapa HOM05D004518 ORTHO05D005434 5.0e-120 434.9 297 78.5
Dinv03206 Davidia involucrata HOM05D004518 ORTHO05D005434 6.5e-120 434.5 294 75.9
Atru.chr1.1396 Acer truncatum HOM05D004518 ORTHO05D005434 1.1e-119 433.7 294 76.9
Dinv05720 Davidia involucrata HOM05D004518 ORTHO05D005434 1.1e-119 433.7 294 75.5
AT2G41160 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 1.9e-119 433.0 294 78.9
Hma1.2p1_0252F.1_g102810 Hydrangea macrophylla HOM05D004518 ORTHO05D005434 2.5e-119 432.6 295 74.9
CSS0002759 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 3.2e-119 432.2 295 74.9
CSS0023469 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 3.2e-119 432.2 295 74.9
GSVIVG01025741001 Vitis vinifera HOM05D004518 ORTHO05D005434 4.2e-119 431.8 295 75.3
MD14G1089500 Malus domestica HOM05D004518 ORTHO05D005434 7.2e-119 431.0 294 75.2
CARHR136250 Cardamine hirsuta HOM05D004518 ORTHO05D005434 9.4e-119 430.6 294 79.3
FAN05G1433 Fragaria x ananassa HOM05D004518 ORTHO05D005434 1.2e-118 430.3 294 75.2
Gohir.D13G001500 Gossypium hirsutum HOM05D004518 ORTHO05D005434 1.2e-118 430.3 295 75.9
Gorai.013G001400 Gossypium raimondii HOM05D004518 ORTHO05D005434 1.2e-118 430.3 295 75.9
Glyma.19G129500 Glycine max HOM05D004518 ORTHO05D005434 2.7e-118 429.1 294 75.2
Cfa019996 Carpinus fangiana HOM05D004518 ORTHO05D005434 3.6e-118 428.7 294 77.2
COL.COLO4_07077 Corchorus olitorius HOM05D004518 ORTHO05D005434 4.7e-118 428.3 295 76.6
TWI53G0703 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 8.0e-118 427.6 293 76.8
MD12G1096200 Malus domestica HOM05D004518 ORTHO05D005434 6.8e-117 424.5 294 75.9
Thecc.05G127700 Theobroma cacao HOM05D004518 ORTHO05D005434 6.8e-117 424.5 295 75.3
Actinidia06430 Actinidia chinensis HOM05D004518 ORTHO05D005434 1.5e-116 423.3 295 74.9
Glyma.03G126400 Glycine max HOM05D004518 ORTHO05D005434 2.6e-116 422.5 294 74.1
BolC4t21891H Brassica oleracea HOM05D004518 ORTHO05D005434 3.4e-116 422.2 298 76.8
CsaV3_3G042950 Cucumis sativus L. HOM05D004518 ORTHO05D005434 3.4e-116 422.2 294 74.5
TWI74G1405 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 3.4e-116 422.2 293 77.1
Carub.0004s2347 Capsella rubella HOM05D004518 ORTHO05D005434 4.4e-116 421.8 294 76.9
Phvul.001G121800 Phaseolus vulgaris HOM05D004518 ORTHO05D005434 4.4e-116 421.8 296 73.6
FvH4_6g25340 Fragaria vesca HOM05D004518 ORTHO05D005434 7.5e-116 421.0 294 73.8
Lj1g0025115 Lotus japonicus HOM05D004518 ORTHO05D005434 7.5e-116 421.0 294 74.1
ClCG10G013700 Citrullus lanatus HOM05D004518 ORTHO05D005434 2.2e-115 419.5 294 74.1
MELO3C026597.2 Cucumis melo HOM05D004518 ORTHO05D005434 3.7e-115 418.7 294 74.5
Potri.006G040100 Populus trichocarpa HOM05D004518 ORTHO05D005434 3.7e-115 418.7 294 74.8
Lalb_Chr14g0365751 Lupinus albus HOM05D004518 ORTHO05D005434 4.8e-115 418.3 294 73.8
FAN09G3120 Fragaria x ananassa HOM05D004518 ORTHO05D005434 6.3e-115 417.9 320 69.4
Aa31LG3G910 Aethionema arabicum HOM05D004518 ORTHO05D005434 1.1e-114 417.2 293 76.8
Duzib106G1523 Durio zibethinus HOM05D004518 ORTHO05D005434 1.4e-114 416.8 295 73.9
Aa31LG3G900 Aethionema arabicum HOM05D004518 ORTHO05D005434 3.1e-114 415.6 311 74.0
CiPaw.10G040700 Carya illinoinensis HOM05D004518 ORTHO05D005434 3.1e-114 415.6 294 74.8
CANSAT64G1638 Cannabis sativa HOM05D004518 ORTHO05D005434 5.4e-114 414.8 294 75.9
Sed0000448 Sechium edule HOM05D004518 ORTHO05D005434 7.0e-114 414.5 294 72.4
A05p02070 Brassica napus HOM05D004518 ORTHO05D005434 1.2e-113 413.7 288 77.8
Medtr7g089550 Medicago truncatula HOM05D004518 ORTHO05D005434 1.2e-113 413.7 294 72.4
C04p02460 Brassica napus HOM05D004518 ORTHO05D005434 2.0e-113 412.9 289 77.9
PSO339G3176 Papaver somniferum HOM05D004518 ORTHO05D005434 2.0e-113 412.9 295 72.9
CiPaw.09G048700 Carya illinoinensis HOM05D004518 ORTHO05D005434 3.5e-113 412.1 294 72.8
Lalb_Chr24g0400371 Lupinus albus HOM05D004518 ORTHO05D005434 3.5e-113 412.1 294 72.4
PGR031G0872 Punica granatum HOM05D004518 ORTHO05D005434 7.7e-113 411.0 294 73.1
VMungo1383G1992 Vigna mungo HOM05D004518 ORTHO05D005434 7.7e-113 411.0 297 73.1
Manes.09G003700 Manihot esculenta HOM05D004518 ORTHO05D005434 1.0e-112 410.6 291 73.9
PSO384G3583 Papaver somniferum HOM05D004518 ORTHO05D005434 3.8e-112 408.7 295 72.2
BcaC02g12756 Brassica carinata HOM05D004518 ORTHO05D005434 1.1e-111 407.1 339 68.1
Migut.J01644 Erythranthe guttata HOM05D004518 ORTHO05D005434 1.2e-110 403.7 294 70.4
Rhsim07G0181600 Rhododendron simsii HOM05D004518 ORTHO05D005434 1.2e-110 403.7 317 65.9
TWI77G0289 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 1.6e-110 403.3 293 73.7
arahy.Tifrunner.gnm1.ann1.5HY1FK Arachis hypogaea HOM05D004518 ORTHO05D005434 4.7e-110 401.7 324 66.0
Cc06_g19630 Coffea canephora HOM05D004518 ORTHO05D005434 4.7e-110 401.7 294 69.4
Sed0017951 Sechium edule HOM05D004518 ORTHO05D005434 4.7e-110 401.7 292 71.9
MBI13_g09215_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 8.8e-109 397.5 298 70.5
TAR623G1611 Trochodendron aralioides HOM05D004518 ORTHO05D005434 2.0e-108 396.4 293 71.0
Haze_20236 Corylus avellana HOM05D002003 ORTHO05D005434 2.6e-108 396.0 327 68.2
ECA247G2040 Erigeron canadensis HOM05D004518 ORTHO05D005434 7.5e-108 394.4 294 69.4
Sopen10g031320 Solanum pennellii HOM05D004518 ORTHO05D005434 7.5e-108 394.4 295 68.8
Ciclev10012184m.g Citrus clementina HOM05D004518 ORTHO05D005434 1.7e-107 393.3 286 73.4
PGSC0003DMG400023695 Solanum tuberosum HOM05D004518 ORTHO05D005434 2.8e-107 392.5 295 68.8
Oeu022968.1 Olea europaea HOM05D004518 ORTHO05D005434 3.7e-107 392.1 294 69.0
EL10Ac3g07249 Beta vulgaris HOM05D004518 ORTHO05D005434 4.9e-107 391.7 294 69.4
HanXRQChr10g0292841 Helianthus annuus HOM05D004518 ORTHO05D005434 3.1e-106 389.0 296 68.2
Lsat_1_v5_gn_9_30021 Lactuca sativa HOM05D004518 ORTHO05D005434 4.1e-106 388.7 292 68.8
Peaxi162Scf00696g00027 Petunia axillaris HOM05D004518 ORTHO05D005434 9.2e-106 387.5 298 68.8
Eucgr.A02232 Eucalyptus grandis HOM05D004518 ORTHO05D005434 2.0e-105 386.3 292 68.5
SGA_v2.0_scaffold66G22264 Striga asiatica HOM05D004518 ORTHO05D005434 4.5e-105 385.2 286 71.3
Solyc10g080810.2 Solanum lycopersicum HOM05D004518 ORTHO05D005434 1.0e-104 384.0 295 67.5
Nitab4.5_0001173g0020 Nicotiana tabacum HOM05D004518 ORTHO05D005434 1.7e-104 383.3 295 68.8
MBI19_g14619_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 2.5e-103 379.4 321 63.9
SGA_v2.0_scaffold69G23161 Striga asiatica HOM05D004518 ORTHO05D005434 4.3e-103 378.6 294 67.7
unitig_744.g24180 Utricularia gibba HOM05D004518 ORTHO05D005434 2.1e-102 376.3 296 66.6
Potri.016G035800 Populus trichocarpa HOM05D004518 ORTHO05D005434 5.2e-101 371.7 294 68.4
MSTRG.19796 Avicennia marina HOM05D004518 ORTHO05D005434 8.9e-101 370.9 294 66.3
Eucgr.K01645 Eucalyptus grandis HOM05D004518 ORTHO05D005434 7.5e-100 367.9 296 65.9
Oeu063781.2 Olea europaea HOM05D004518 ORTHO05D005434 1.1e-98 364.0 352 55.7
HPP92_018980 Vanilla planifolia HOM05D004518 ORTHO05D005434 2.4e-98 362.8 294 64.6
Os01g0268800 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 4.1e-98 362.1 295 65.8
Gohir.A13G002100 Gossypium hirsutum HOM05D004518 ORTHO05D005434 5.4e-98 361.7 295 67.5
Nn7g36811 Nelumbo nucifera HOM05D004518 ORTHO05D005434 9.2e-98 360.9 271 70.1
CDE08G0004 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 2.3e-96 356.3 298 64.1
Zm00001eb128690 Zea mays HOM05D004518 ORTHO05D005434 3.9e-96 355.5 296 64.9
unitig_21.g20688 Utricularia gibba HOM05D004518 ORTHO05D005434 1.2e-94 350.5 296 61.1
FAN02G2919 Fragaria x ananassa HOM05D004518 ORTHO05D005434 5.2e-93 345.1 238 73.9
Duzib128G0186 Durio zibethinus HOM05D004518 ORTHO05D005434 6.8e-93 344.7 238 74.4
Aqoxy2G00434 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 1.5e-92 343.6 240 72.1
Peaxi162Scf00076g00330 Petunia axillaris HOM05D004518 ORTHO05D005434 2.6e-92 342.8 286 64.7
vmacro05025 Vaccinium macrocarpon HOM05D004518 ORTHO05D005434 1.9e-90 336.7 327 57.2
QL07p011297 Quercus lobata HOM05D004518 ORTHO05D005434 9.2e-90 334.3 279 66.7
CDE08G0582 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 8.6e-88 327.8 295 62.4
CAN.G128.73 Capsicum annuum HOM05D004518 ORTHO05D005434 8.1e-86 321.2 241 68.9
arahy.Tifrunner.gnm1.ann1.CJ2XLM Arachis hypogaea HOM05D004518 ORTHO05D005434 1.4e-85 320.5 313 59.4
Hund19087 Selenicereus undatus HOM05D004518 ORTHO05D005434 6.8e-85 318.2 294 60.5
Sc13g0001070 Simmondsia chinensis HOM05D004518 ORTHO05D005434 3.7e-83 312.4 196 80.1
Hund24582 Selenicereus undatus HOM05D004518 ORTHO05D005434 1.4e-82 310.5 294 61.2
Mapoly0023s0107 Marchantia polymorpha HOM05D004518 ORTHO05D005434 7.8e-81 304.7 307 55.7
Psat3g079720 Pisum sativum HOM05D004518 ORTHO05D005434 1.3e-80 303.9 209 74.2
Pp3c15_13440 Physcomitrium patens HOM05D004518 ORTHO05D005434 7.3e-79 298.1 294 56.1
Sabra06G0027100 Salix brachista HOM05D004518 ORTHO05D005434 2.8e-78 296.2 279 63.4
SMO364G0164 Selaginella moellendorffii HOM05D004518 ORTHO05D005434 1.8e-77 293.5 306 54.9
AUR62030305 Chenopodium quinoa HOM05D004518 ORTHO05D005434 9.9e-76 287.7 294 56.1
HPP92_001027 Vanilla planifolia HOM05D004518 ORTHO05D005434 9.9e-76 287.7 254 61.8
AUR62018357 Chenopodium quinoa HOM05D004518 ORTHO05D005434 2.2e-75 286.6 294 56.1
Actinidia22259 Actinidia chinensis HOM05D004518 ORTHO05D005434 2.4e-74 283.1 217 72.8
Pp3c9_17200 Physcomitrium patens HOM05D004518 ORTHO05D005434 6.6e-72 275.0 271 55.7
Zm00001eb150410 Zea mays HOM05D004518 ORTHO05D005434 1.6e-70 270.4 249 57.8
DCAR_020579 Daucus carota HOM05D004518 ORTHO05D005434 4.7e-70 268.9 295 52.5
TPR.G16082 Trifolium pratense HOM05D002003 ORTHO05D002037 2.4e-69 266.5 206 68.0
SHI48963 Sapria himalayana HOM05D004518 ORTHO05D005434 6.9e-69 265.0 369 44.4
Aqoxy2G02076 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 2.6e-68 263.1 205 66.8
AagrBONN_evm.TU.Sc2ySwM_344.4495 Anthoceros agrestis HOM05D004518 ORTHO05D005434 5.8e-68 261.9 217 60.8
ATR0307G082 Amborella trichopoda HOM05D004518 ORTHO05D005434 3.9e-64 249.2 208 66.3
SGA_v2.0_scaffold66G22363 Striga asiatica HOM05D004518 ORTHO05D005434 3.3e-63 246.1 328 47.3
CDE02G2541 Ceratophyllum demersum HOM05D002603 ORTHO05D002907 5.6e-63 245.4 291 51.5
CBR_g11167 Chara braunii HOM05D004518 ORTHO05D005434 2.1e-62 243.4 317 42.9
Lj1A1090G38 Lonicera japonica HOM05D004518 ORTHO05D005434 2.1e-62 243.4 292 50.7
Os01g0806000 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 1.6e-57 227.3 199 60.8
Lj2A402T37 Lonicera japonica HOM05D004518 ORTHO05D005434 2.1e-54 216.9 179 67.6
CBR_g18715 Chara braunii HOM05D004518 ORTHO05D005434 2.2e-51 206.8 333 40.2
Pp3c26_11360 Physcomitrium patens HOM05D004518 ORTHO05D005434 2.6e-44 183.3 330 36.7
Cpa.g.sc92.78 Carica papaya HOM05D004518 ORTHO05D005434 2.2e-43 180.3 123 74.0
TPR.G27640 Trifolium pratense HOM05D004518 ORTHO05D005434 9.3e-34 148.3 90 81.1
MSTRG.5996 Avicennia marina HOM05D004518 ORTHO05D005434 1.5e-31 141.0 90 74.4
BolC4t21949H Brassica oleracea HOM05D004518 ORTHO05D005434 6.3e-30 135.6 230 44.8
C04p03070 Brassica napus HOM05D004518 ORTHO05D005434 1.5e-28 131.0 268 40.7
Cre08.g386050 Chlamydomonas reinhardtii HOM05D004518 ORTHO05D005434 5.9e-28 129.0 307 32.2
SEGI_26369 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 1.1e-26 124.8 84 66.7
TAR369G0459 Trochodendron aralioides HOM05D004518 ORTHO05D005434 2.9e-19 100.1 100 61.0
Dinv05308 Davidia involucrata HOM05D004518 ORTHO05D005434 1.4e-18 97.8 60 75.0
MCO13G544 Micromonas commoda HOM05D004518 ORTHO05D005434 1.9e-18 97.4 327 29.4
Psat3g079760 Pisum sativum HOM05D004518 ORTHO05D005434 3.2e-18 96.7 74 67.6
FAN02G0789 Fragaria x ananassa HOM05D004518 ORTHO05D011253 4.4e-15 86.3 68 66.2
MBI19_g45264_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 1.8e-13 80.9 169 37.3
PGSC0003DMG400012448 Solanum tuberosum HOM05D004518 ORTHO05D005434 7.5e-07 58.9 42 59.5
SEGI_36601 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 2.2e-06 57.4 42 61.9
PGSC0003DMG400010553 Solanum tuberosum HOM05D004518 ORTHO05D005434 3.7e-06 56.6 38 60.5


User provided reference genes

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