Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39895 Brassica carinata HOM05D001463 ORTHO05D001282 3.7e-60 235.0 145 100.0
BolC8t50722H Brassica oleracea HOM05D001463 ORTHO05D001282 2.8e-55 218.8 140 99.3
C08p30990 Brassica napus HOM05D001463 ORTHO05D001282 1.4e-51 206.5 140 93.6
A09p48650 Brassica napus HOM05D001463 ORTHO05D001282 1.6e-50 203.0 140 92.1
BcaB01g00071 Brassica carinata HOM05D001463 ORTHO05D001282 3.5e-42 175.3 143 80.4
BcaB02g08404 Brassica carinata HOM05D001463 ORTHO05D001282 1.7e-41 172.9 126 70.6
BcaC02g09782 Brassica carinata HOM05D001463 ORTHO05D001282 8.7e-41 170.6 146 69.9
Sp5g06820 Schrenkiella parvula HOM05D001463 ORTHO05D001282 4.3e-40 168.3 145 75.9
A04p04330 Brassica napus HOM05D001463 ORTHO05D001282 2.1e-39 166.0 126 67.5
BraA04t16144Z Brassica rapa HOM05D001463 ORTHO05D001282 2.1e-39 166.0 126 67.5
C04p36660 Brassica napus HOM05D001463 ORTHO05D001282 3.1e-38 162.2 145 66.9
BolC4t25129H Brassica oleracea HOM05D001463 ORTHO05D001282 3.1e-38 162.2 145 66.9
BraA09t40317Z Brassica rapa HOM05D001463 ORTHO05D001282 2.6e-37 159.1 97 89.7
Carub.0005s2241 Capsella rubella HOM05D001463 ORTHO05D001282 2.4e-35 152.5 130 75.4
AL5G36870 Arabidopsis lyrata HOM05D001463 ORTHO05D001282 2.4e-30 136.0 144 69.4
Thhalv10010805m.g Eutrema salsugineum HOM05D001463 ORTHO05D001282 2.2e-28 129.4 146 72.6
AL4G37420 Arabidopsis lyrata HOM05D001463 ORTHO05D001282 3.2e-27 125.6 150 52.7
C04p67640 Brassica napus HOM05D001463 ORTHO05D001282 1.3e-25 120.2 151 49.0
BolC4t28263H Brassica oleracea HOM05D001463 ORTHO05D001282 1.3e-25 120.2 151 49.0
A04p30220 Brassica napus HOM05D001463 ORTHO05D001282 6.7e-25 117.9 151 60.9
BraA04t18486Z Brassica rapa HOM05D001463 ORTHO05D001282 6.7e-25 117.9 151 60.9
BcaC02g12118 Brassica carinata HOM05D001463 ORTHO05D001282 5.6e-24 114.8 154 50.0
CARHR165710 Cardamine hirsuta HOM05D001463 ORTHO05D001282 7.4e-24 114.4 145 69.0
Sp4g22150 Schrenkiella parvula HOM05D001463 ORTHO05D001282 1.1e-22 110.5 154 50.0
AT3G55646 Arabidopsis thaliana HOM05D001463 ORTHO05D001282 2.4e-22 109.4 127 65.4
A05p06550 Brassica napus HOM05D001463 ORTHO05D001282 3.1e-22 109.0 151 45.0
C04p07650 Brassica napus HOM05D001463 ORTHO05D001282 5.3e-22 108.2 151 49.7
BcaB02g09078 Brassica carinata HOM05D001463 ORTHO05D001282 1.5e-21 106.7 154 49.4
THA.LOC104810063 Tarenaya hassleriana HOM05D001463 ORTHO05D001282 1.3e-20 103.6 154 51.3
BraA05t19624Z Brassica rapa HOM05D001463 ORTHO05D001282 3.8e-20 102.1 159 45.9
BolC4t22381H Brassica oleracea HOM05D001463 ORTHO05D001282 6.5e-20 101.3 159 46.5
CARHR134770 Cardamine hirsuta HOM05D001463 ORTHO05D001282 7.1e-19 97.8 148 50.0
BcaB02g09077 Brassica carinata HOM05D001463 ORTHO05D001282 5.1e-17 91.7 148 41.2
BcaNung07238 Brassica carinata HOM05D001463 ORTHO05D001282 7.4e-16 87.8 150 44.7
AT2G39855 Arabidopsis thaliana HOM05D001463 ORTHO05D001282 9.7e-16 87.4 95 51.6
Thhalv10017636m.g Eutrema salsugineum HOM05D001463 ORTHO05D001282 6.3e-15 84.7 103 55.3
Carub.0004s2198 Capsella rubella HOM05D001463 ORTHO05D001282 1.1e-14 84.0 105 53.3
Cpa.g.sc19.255 Carica papaya HOM05D001463 ORTHO05D001282 1.4e-14 83.6 149 36.2
Haze_17151 Corylus avellana HOM05D001463 ORTHO05D001282 1.8e-14 83.2 144 42.4
BcaB02g09079 Brassica carinata HOM05D001463 ORTHO05D001282 9.0e-14 80.9 102 53.9
CiPaw.01G293300 Carya illinoinensis HOM05D001463 ORTHO05D001282 2.9e-12 75.9 144 39.6
QL08p062024 Quercus lobata HOM05D001463 ORTHO05D001282 6.5e-12 74.7 137 40.9
CiPaw.02G188100 Carya illinoinensis HOM05D001463 ORTHO05D001282 2.5e-11 72.8 168 35.7
Potri.010G196400 Populus trichocarpa HOM05D001463 ORTHO05D001282 2.5e-11 72.8 140 39.3
Glyma.02G252500 Glycine max HOM05D001463 ORTHO05D001282 5.5e-11 71.6 133 38.3
Cc02_g07230 Coffea canephora HOM05D001463 ORTHO05D001282 1.2e-10 70.5 138 36.2
Phvul.001G238300 Phaseolus vulgaris HOM05D001463 ORTHO05D001282 1.2e-10 70.5 156 35.9
Manes.08G082200 Manihot esculenta HOM05D001463 ORTHO05D001282 1.6e-10 70.1 128 37.5
Potri.008G061700 Populus trichocarpa HOM05D001463 ORTHO05D001282 2.7e-10 69.3 144 36.8
Dinv16275 Davidia involucrata HOM05D001463 ORTHO05D001282 4.6e-10 68.6 147 37.4
Lalb_Chr18g0052921 Lupinus albus HOM05D001463 ORTHO05D001282 4.6e-10 68.6 158 34.2
Manes.07G122500 Manihot esculenta HOM05D001463 ORTHO05D001282 6.1e-10 68.2 141 39.0
Sabra08G0045300 Salix brachista HOM05D001463 ORTHO05D001282 1.0e-09 67.4 139 37.4
TAR623G0111 Trochodendron aralioides HOM05D001463 ORTHO05D001282 1.8e-09 66.6 140 39.3
QL07p028303 Quercus lobata HOM05D001463 ORTHO05D001282 5.1e-09 65.1 133 36.8
MELO3C026564.2 Cucumis melo HOM05D001463 ORTHO05D001282 6.7e-09 64.7 158 34.8
Dinv34453 Davidia involucrata HOM05D001463 ORTHO05D001282 6.7e-09 64.7 145 37.2
Gohir.A05G302600 Gossypium hirsutum HOM05D001463 ORTHO05D001282 8.8e-09 64.3 149 36.9
CsaV3_5G008550 Cucumis sativus L. HOM05D001463 ORTHO05D001282 2.0e-08 63.2 158 34.2
Manes.09G098500 Manihot esculenta HOM05D001463 ORTHO05D001282 2.0e-08 63.2 165 32.1
CiPaw.10G149400 Carya illinoinensis HOM05D001463 ORTHO05D001282 2.5e-08 62.8 140 33.6
MD03G1083100 Malus domestica HOM05D001463 ORTHO05D001282 2.5e-08 62.8 146 34.2
PGR044G2554 Punica granatum HOM05D001463 ORTHO05D001282 3.3e-08 62.4 130 34.6
Manes.02G126600 Manihot esculenta HOM05D001463 ORTHO05D001282 4.3e-08 62.0 146 34.2
Psat0s558g0040 Pisum sativum HOM05D001463 ORTHO05D001282 5.7e-08 61.6 132 37.1
Eucgr.J00967 Eucalyptus grandis HOM05D001463 ORTHO05D001282 7.4e-08 61.2 157 33.1
FvH4_7g23590 Fragaria vesca HOM05D001463 ORTHO05D001282 7.4e-08 61.2 140 34.3
Lalb_Chr19g0125021 Lupinus albus HOM05D001463 ORTHO05D001282 7.4e-08 61.2 141 35.5
CARHR211340 Cardamine hirsuta HOM05D001463 ORTHO05D001282 9.7e-08 60.8 130 34.6
Thecc.05G028900 Theobroma cacao HOM05D001463 ORTHO05D001282 9.7e-08 60.8 145 33.1
AT5G02020 Arabidopsis thaliana HOM05D001463 ORTHO05D001282 1.3e-07 60.5 154 34.4
VMungo1383G2188 Vigna mungo HOM05D001463 ORTHO05D001282 1.3e-07 60.5 131 33.6
Sabra10G0151000 Salix brachista HOM05D001463 ORTHO05D001282 1.7e-07 60.1 136 35.3
AL6G11220 Arabidopsis lyrata HOM05D001463 ORTHO05D001282 2.2e-07 59.7 135 36.3
Medtr5g081360 Medicago truncatula HOM05D001463 ORTHO05D001282 2.2e-07 59.7 135 37.8
Cfa017303 Carpinus fangiana HOM05D001463 ORTHO05D001282 2.8e-07 59.3 128 34.4
CiPaw.09G201400 Carya illinoinensis HOM05D001463 ORTHO05D001282 2.8e-07 59.3 161 30.4
HanXRQChr06g0177681 Helianthus annuus HOM05D001463 ORTHO05D001282 2.8e-07 59.3 138 34.1
Prupe.6G264600 Prunus persica HOM05D001463 ORTHO05D001282 4.8e-07 58.5 136 34.6
Thecc.10G031300 Theobroma cacao HOM05D001463 ORTHO05D001282 4.8e-07 58.5 150 35.3
Gohir.A10G225400 Gossypium hirsutum HOM05D001463 ORTHO05D001282 8.2e-07 57.8 135 35.6
Thecc.09G312500 Theobroma cacao HOM05D001463 ORTHO05D001282 8.2e-07 57.8 144 34.0
Atru.chr12.267 Acer truncatum HOM05D001463 ORTHO05D001282 1.1e-06 57.4 139 33.8
Lalb_Chr01g0022791 Lupinus albus HOM05D001463 ORTHO05D001282 1.1e-06 57.4 133 37.6
MD04G1139000 Malus domestica HOM05D001463 ORTHO05D001282 1.1e-06 57.4 138 31.2
Medtr7g065150 Medicago truncatula HOM05D001463 ORTHO05D001282 1.1e-06 57.4 131 37.4
Gohir.D09G156600 Gossypium hirsutum HOM05D001463 ORTHO05D001282 1.4e-06 57.0 142 33.1
Gorai.006G178100 Gossypium raimondii HOM05D001463 ORTHO05D001282 1.4e-06 57.0 142 32.4
Cpa.g.sc56.61 Carica papaya HOM05D001463 ORTHO05D001282 1.8e-06 56.6 140 32.9
Duzib106G1514 Durio zibethinus HOM05D001463 ORTHO05D001282 2.4e-06 56.2 144 35.4
Gohir.A09G160900 Gossypium hirsutum HOM05D001463 ORTHO05D001282 2.4e-06 56.2 144 32.6
THA.LOC104827030 Tarenaya hassleriana HOM05D001463 ORTHO05D001282 2.4e-06 56.2 147 33.3
GSVIVG01024854001 Vitis vinifera HOM05D001463 ORTHO05D001282 2.4e-06 56.2 141 31.9
GSVIVG01034066001 Vitis vinifera HOM05D001463 ORTHO05D001282 2.4e-06 56.2 145 33.8
arahy.Tifrunner.gnm1.ann1.DI08LN Arachis hypogaea HOM05D001463 ORTHO05D001282 3.1e-06 55.8 140 33.6
CSS0026065 Camellia sinensis var. sinensis HOM05D001463 ORTHO05D001282 3.1e-06 55.8 167 33.5
MBI14_g02863_MAGBIO Magnolia biondii HOM05D001463 ORTHO05D001282 3.1e-06 55.8 156 31.4
Peaxi162Scf00975g10014 Petunia axillaris HOM05D001463 ORTHO05D001282 3.1e-06 55.8 131 34.4
Ca_05913_v3 Cicer arietinum L. HOM05D001463 ORTHO05D001282 4.1e-06 55.5 137 34.3
Manes.10G021200 Manihot esculenta HOM05D001463 ORTHO05D001282 5.3e-06 55.1 145 34.5
Rhsim03G0137600 Rhododendron simsii HOM05D001463 ORTHO05D001282 5.3e-06 55.1 136 33.8
ClCG04G007570 Citrullus lanatus HOM05D001463 ORTHO05D001282 6.9e-06 54.7 133 33.1
Cc06_g02060 Coffea canephora HOM05D001463 ORTHO05D001282 6.9e-06 54.7 144 33.3
CsaV3_4G025610 Cucumis sativus L. HOM05D001463 ORTHO05D001282 6.9e-06 54.7 135 32.6
Dinv37114 Davidia involucrata HOM05D001463 ORTHO05D001282 6.9e-06 54.7 142 35.2
Lsat_1_v5_gn_2_117121 Lactuca sativa HOM05D001463 ORTHO05D001282 6.9e-06 54.7 141 31.9
Lalb_Chr10g0104861 Lupinus albus HOM05D001463 ORTHO05D001282 6.9e-06 54.7 138 34.1
Gorai.012G073500 Gossypium raimondii HOM05D001463 ORTHO05D001282 9.1e-06 54.3 150 45.3
Prupe.6G067400 Prunus persica HOM05D001463 ORTHO05D001282 9.1e-06 54.3 148 34.5
Sc11g0007610 Simmondsia chinensis HOM05D001463 ORTHO05D001282 9.1e-06 54.3 115 35.7
TWI53G1409 Tripterygium wilfordii HOM05D001463 ORTHO05D001282 9.1e-06 54.3 146 32.2


User provided reference genes

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