Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 3.7e-112 408.3 217 100.0
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 3.1e-111 405.2 217 99.5
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 2.0e-110 402.5 217 98.6
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 2.7e-110 402.1 217 99.1
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 1.3e-109 399.8 217 98.2
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 1.3e-109 399.8 217 98.2
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 9.8e-105 383.6 217 93.1
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 4.8e-104 381.3 219 93.2
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 1.2e-102 376.7 217 91.2
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 1.7e-101 372.9 220 90.9
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 3.2e-100 368.6 220 90.0
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 7.2e-100 367.5 220 90.9
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 7.2e-100 367.5 220 90.9
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 7.2e-100 367.5 220 90.9
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 9.4e-100 367.1 217 88.9
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 3.0e-98 362.1 217 87.6
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 7.5e-97 357.5 211 92.4
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 7.0e-95 350.9 198 88.9
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 1.3e-80 303.5 227 73.6
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 1.0e-77 293.9 209 79.4
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 2.5e-76 289.3 181 89.0
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 5.6e-76 288.1 228 70.2
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 9.5e-76 287.3 177 86.4
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 8.9e-74 280.8 217 70.5
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 2.0e-73 279.6 222 67.6
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 9.8e-73 277.3 233 64.4
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 2.9e-72 275.8 220 65.9
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 4.9e-72 275.0 232 64.2
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 1.4e-71 273.5 207 69.1
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 2.4e-71 272.7 231 63.6
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 2.4e-71 272.7 212 68.9
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 2.4e-71 272.7 208 68.3
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 3.2e-71 272.3 230 66.1
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 3.2e-71 272.3 231 64.9
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 5.4e-71 271.6 225 64.0
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 7.1e-71 271.2 233 62.7
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 2.7e-70 269.2 197 71.6
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 4.6e-70 268.5 216 66.2
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 4.6e-70 268.5 216 66.2
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 4.6e-70 268.5 208 67.3
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 4.6e-70 268.5 208 67.3
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 4.6e-70 268.5 207 68.1
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 6.0e-70 268.1 225 64.9
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 7.8e-70 267.7 207 67.1
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 7.8e-70 267.7 207 67.6
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 1.0e-69 267.3 214 66.4
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.3e-69 266.9 208 66.8
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 2.3e-69 266.2 207 67.1
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 3.0e-69 265.8 211 65.9
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 3.0e-69 265.8 209 67.5
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 3.0e-69 265.8 206 66.5
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 3.0e-69 265.8 212 65.6
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 3.0e-69 265.8 207 66.2
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 3.9e-69 265.4 206 67.5
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 5.1e-69 265.0 206 68.0
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 5.1e-69 265.0 202 69.3
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 6.6e-69 264.6 227 60.8
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 8.6e-69 264.2 208 66.3
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 8.6e-69 264.2 214 65.0
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 1.1e-68 263.8 220 64.1
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.1e-68 263.8 206 67.5
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 1.1e-68 263.8 210 66.2
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 1.5e-68 263.5 211 64.9
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 1.5e-68 263.5 202 68.8
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.9e-68 263.1 238 60.9
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.9e-68 263.1 238 60.9
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.9e-68 263.1 211 66.8
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 3.3e-68 262.3 194 70.1
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 3.3e-68 262.3 223 63.2
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.3e-68 261.9 238 60.5
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 4.3e-68 261.9 233 64.4
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 5.6e-68 261.5 202 67.8
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 5.6e-68 261.5 198 69.7
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 7.3e-68 261.2 238 60.5
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 7.3e-68 261.2 238 60.5
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 7.3e-68 261.2 198 69.2
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 9.5e-68 260.8 237 63.7
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 9.5e-68 260.8 238 60.5
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 9.5e-68 260.8 238 60.5
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 9.5e-68 260.8 208 65.9
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 1.2e-67 260.4 202 67.3
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 1.6e-67 260.0 234 62.0
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 1.6e-67 260.0 210 65.2
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 2.1e-67 259.6 221 62.0
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 2.1e-67 259.6 232 62.5
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 2.8e-67 259.2 231 61.9
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 2.8e-67 259.2 238 60.1
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 2.8e-67 259.2 224 61.2
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 3.6e-67 258.8 213 64.3
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 4.7e-67 258.5 202 66.3
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 4.7e-67 258.5 203 65.0
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 4.7e-67 258.5 213 63.4
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 4.7e-67 258.5 221 62.4
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 1.1e-66 257.3 207 64.7
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 1.8e-66 256.5 205 65.9
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 1.8e-66 256.5 209 65.1
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 3.1e-66 255.8 233 62.2
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 5.2e-66 255.0 210 62.4
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 6.8e-66 254.6 212 63.7
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 8.9e-66 254.2 234 59.8
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 1.2e-65 253.8 215 64.2
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 1.5e-65 253.4 239 60.7
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 2.0e-65 253.1 210 64.8
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 2.0e-65 253.1 195 66.7
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 2.0e-65 253.1 202 65.3
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 4.4e-65 251.9 228 61.4
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 1.3e-64 250.4 219 64.8
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 2.9e-64 249.2 219 64.4
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 3.8e-64 248.8 234 59.4
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 2.4e-63 246.1 197 65.5
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 7.1e-63 244.6 199 66.3
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 2.1e-62 243.0 215 59.1
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 2.1e-62 243.0 235 58.3
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 3.5e-62 242.3 223 60.1
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 7.8e-62 241.1 225 57.8
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 1.3e-61 240.4 194 63.4
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 2.3e-61 239.6 210 60.0
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 3.3e-60 235.7 226 56.2
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 4.7e-59 231.9 201 61.7
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 6.2e-59 231.5 228 61.8
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 1.4e-58 230.3 194 59.8
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 2.4e-58 229.6 228 61.4
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 3.1e-58 229.2 192 60.4
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 1.9e-55 219.9 193 62.2
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 5.4e-55 218.4 197 59.4
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 3.6e-51 205.7 204 53.9
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 1.4e-50 203.8 148 68.9
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 6.0e-46 188.3 225 52.0
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 2.3e-45 186.4 171 56.1
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 1.1e-44 184.1 220 51.8
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 5.5e-39 165.2 125 68.0
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 4.6e-38 162.2 126 64.3
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 1.1e-34 151.0 197 47.7
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 6.9e-34 148.3 114 65.8
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 9.0e-34 147.9 127 62.2
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 9.0e-34 147.9 217 43.8
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 1.5e-33 147.1 102 70.6
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 4.2e-31 139.0 107 65.4
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 1.4e-13 80.9 90 55.6
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 3.3e-12 76.3 62 61.3
AagrBONN_evm.TU.Sc2ySwM_117.4181 Anthoceros agrestis HOM05D025074 ORTHO05D006395 7.9e-06 55.1 170 28.8
AagrBONN_evm.TU.Sc2ySwM_117.4197 Anthoceros agrestis HOM05D025074 ORTHO05D006395 7.9e-06 55.1 170 28.8


User provided reference genes

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