Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 1.8e-294 1015.4 575 100.0
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 1.1e-293 1012.7 575 99.0
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 8.1e-292 1006.5 575 98.4
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 2.9e-281 971.5 575 95.7
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 7.1e-280 966.8 575 95.1
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 5.9e-242 840.9 574 82.1
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 1.5e-229 799.7 570 80.5
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 1.6e-223 779.6 575 76.9
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 8.9e-214 747.3 575 71.1
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 2.3e-206 722.6 574 69.5
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 2.6e-205 719.2 574 70.0
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 7.1e-203 711.1 565 71.3
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 3.9e-201 705.3 575 66.3
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 8.6e-201 704.1 574 66.7
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 5.2e-198 694.9 574 65.5
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 1.4e-195 686.8 575 69.7
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 1.7e-188 663.3 577 62.9
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 8.1e-183 644.4 565 66.7
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 2.5e-171 606.3 545 58.3
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 1.3e-132 477.6 579 46.8
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 6.5e-132 475.3 545 48.3
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 1.8e-126 457.2 555 45.2
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 2.9e-124 449.9 579 44.9
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 3.8e-124 449.5 577 44.9
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.6e-122 444.1 578 45.0
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 6.1e-122 442.2 545 46.2
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 4.0e-121 439.5 572 43.4
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 2.2e-119 433.7 547 45.9
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 3.7e-119 433.0 574 44.9
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 3.1e-118 429.9 577 42.6
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 9.2e-118 428.3 539 45.5
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 5.9e-117 425.6 575 42.6
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 1.6e-114 417.5 583 42.7
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 2.8e-114 416.8 561 42.8
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 2.8e-114 416.8 561 42.8
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 4.7e-114 416.0 574 43.9
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 4.7e-114 416.0 580 42.8
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 1.0e-113 414.8 537 42.3
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 3.0e-113 413.3 578 42.0
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 2.6e-112 410.2 579 40.9
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.4e-112 409.8 573 43.3
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 1.3e-111 407.9 552 42.9
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 3.7e-111 406.4 566 42.2
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 8.3e-111 405.2 546 42.7
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 1.1e-110 404.8 596 41.4
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 9.2e-110 401.7 579 42.3
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 1.3e-108 397.9 584 42.0
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 3.9e-108 396.4 571 41.5
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 3.9e-108 396.4 580 40.0
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 8.6e-108 395.2 645 39.1
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 1.5e-107 394.4 558 41.6
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 1.5e-107 394.4 553 42.9
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 1.9e-107 394.0 559 41.9
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 2.5e-107 393.7 558 40.0
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 7.3e-107 392.1 588 41.7
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.8e-106 390.2 573 42.4
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 8.0e-106 388.7 553 40.7
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 2.6e-104 383.6 575 39.5
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 5.8e-104 382.5 562 39.9
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 7.5e-104 382.1 545 41.5
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.3e-103 381.3 562 39.9
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 2.2e-103 380.6 536 40.5
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 2.9e-103 380.2 545 41.5
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 6.4e-103 379.0 562 39.9
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 1.1e-102 378.3 573 40.0
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 1.4e-102 377.9 578 40.0
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 2.4e-102 377.1 553 39.4
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 5.4e-102 375.9 554 40.6
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 1.2e-101 374.8 576 40.8
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 4.6e-101 372.9 576 38.7
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 4.6e-101 372.9 571 38.7
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 1.0e-100 371.7 556 43.9
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 2.3e-100 370.5 575 39.1
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 3.0e-100 370.2 573 38.4
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 3.0e-100 370.2 554 40.3
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 6.6e-100 369.0 583 39.3
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 8.6e-100 368.6 582 38.3
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 3.3e-99 366.7 521 39.2
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 4.3e-99 366.3 572 37.6
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 2.8e-98 363.6 567 38.3
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 2.8e-98 363.6 563 38.2
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 3.6e-98 363.2 579 38.2
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 2.3e-97 360.5 576 37.5
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 4.0e-97 359.8 572 36.7
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 2.6e-96 357.1 582 38.1
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 7.5e-96 355.5 461 44.7
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 1.3e-95 354.8 581 37.2
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 3.7e-95 353.2 561 38.7
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 4.9e-95 352.8 563 37.7
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 6.4e-95 352.4 582 38.7
MD08G1226900 Malus domestica HOM05D003578 ORTHO05D004021 8.3e-95 352.1 462 43.5
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 2.4e-94 350.5 576 41.3
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 5.4e-94 349.4 580 37.6
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 7.1e-94 349.0 582 38.5
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.7e-93 347.1 480 43.3
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 3.5e-93 346.7 538 41.3
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 6.6e-92 342.4 548 38.5
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 1.8e-89 334.3 580 35.5
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 5.8e-88 329.3 567 35.8
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 2.9e-87 327.0 593 36.3
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 3.7e-87 326.6 563 36.2
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 1.4e-86 324.7 555 36.9
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 6.0e-85 319.3 534 37.5
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 6.6e-84 315.8 541 37.3
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 6.6e-84 315.8 576 34.7
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 8.6e-84 315.5 569 34.8
Lj1C1063G12 Lonicera japonica HOM05D003578 ORTHO05D004021 1.5e-83 314.7 377 47.7
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 4.3e-83 313.2 575 35.3
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 1.6e-82 311.2 596 35.9
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 2.8e-82 310.5 605 36.2
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 2.8e-82 310.5 575 35.0
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 3.6e-82 310.1 473 39.1
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 1.8e-81 307.8 575 35.0
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 3.1e-81 307.0 502 36.3
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 9.9e-80 302.0 578 33.7
Psat1g170240 Pisum sativum HOM05D003578 ORTHO05D004021 1.7e-79 301.2 481 38.3
Oeu026056.1 Olea europaea HOM05D003578 ORTHO05D004021 2.2e-79 300.8 464 41.2
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 2.9e-79 300.4 389 44.5
Eucgr.G00629 Eucalyptus grandis HOM05D003578 ORTHO05D004021 4.6e-77 293.1 425 41.2
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 1.6e-74 284.6 583 33.1
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 4.8e-74 283.1 465 39.4
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 3.8e-71 273.5 580 31.2
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 7.9e-69 265.8 364 42.3
A07p22210 Brassica napus HOM05D003578 ORTHO05D004021 1.3e-63 248.4 160 80.0
ATR0193G049 Amborella trichopoda HOM05D003578 ORTHO05D004021 3.3e-59 233.8 457 34.6
SEGI_09452 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 1.5e-56 224.9 389 33.9
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 2.6e-56 224.2 559 29.2
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 9.3e-54 215.7 266 42.9
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 6.9e-49 199.5 257 41.2
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 7.2e-46 189.5 553 29.1
SEGI_11795 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 1.1e-43 182.2 358 32.7
Zm00001eb040130 Zea mays HOM05D003578 ORTHO05D004021 3.1e-41 174.1 401 32.4
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 3.4e-40 170.6 328 33.8
GSVIVG01023069001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.7e-39 168.3 236 43.2
CiPaw.05G040600 Carya illinoinensis HOM05D003578 ORTHO05D004021 2.9e-39 167.5 255 43.5
SMO254G0006 Selaginella moellendorffii HOM05D003578 ORTHO05D004021 6.5e-39 166.4 464 28.9
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 2.0e-35 154.8 248 34.7
Mapoly0042s0088 Marchantia polymorpha HOM05D003578 ORTHO05D004021 3.1e-33 147.5 498 25.7
Pp3c7_8870 Physcomitrium patens HOM05D003578 ORTHO05D004021 6.1e-29 133.3 451 25.9
HPP92_025538 Vanilla planifolia HOM05D003578 ORTHO05D004021 5.7e-27 126.7 249 29.7
Cre02.g098300 Chlamydomonas reinhardtii HOM05D003578 ORTHO05D004021 3.8e-23 114.0 423 23.4
Nn7g38101 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.1e-22 112.5 164 41.5
ATR0686G046 Amborella trichopoda HOM05D003578 ORTHO05D004021 1.9e-22 111.7 131 44.3
PRCOL_00003819 Prasinoderma coloniale HOM05D003578 ORTHO05D004021 1.9e-22 111.7 556 21.8
CBR_g55876 Chara braunii HOM05D003578 ORTHO05D004021 2.5e-22 111.3 452 22.8
Nn1g00799 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.5e-22 111.3 179 39.7
Aqoxy2G02352 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 4.2e-22 110.5 146 42.5
Actinidia00223 Actinidia chinensis HOM05D003578 ORTHO05D004021 8.0e-21 106.3 308 31.5
Lsat_1_v5_gn_4_72880 Lactuca sativa HOM05D003578 ORTHO05D004021 3.3e-19 100.9 154 33.8
COL.COLO4_34280 Corchorus olitorius HOM05D003578 ORTHO05D004021 9.7e-19 99.4 86 60.5
GSVIVG01023034001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.4e-17 94.7 153 35.9
GSVIVG01023046001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.1e-17 94.4 153 35.3
PGSC0003DMG400023774 Solanum tuberosum HOM05D003578 ORTHO05D004021 7.7e-16 89.7 123 44.7
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 1.3e-15 89.0 74 56.8
arahy.Tifrunner.gnm1.ann1.3K20HM Arachis hypogaea HOM05D003578 ORTHO05D004021 3.8e-15 87.4 175 33.7
CAN.G1352.18 Capsicum annuum HOM05D003578 ORTHO05D004021 3.2e-14 84.3 162 45.7
CsaV3_6G032180 Cucumis sativus L. HOM05D003578 ORTHO05D004021 2.7e-13 81.3 105 41.0
HPP92_026283 Vanilla planifolia HOM05D003578 ORTHO05D004021 1.0e-12 79.3 163 32.5
Lj1A1063T36 Lonicera japonica HOM05D003578 ORTHO05D004021 1.8e-12 78.6 215 26.5
Nn1g00803 Nelumbo nucifera HOM05D003578 ORTHO05D004021 4.0e-12 77.4 175 30.9
Zm00001eb226250 Zea mays HOM05D003578 ORTHO05D004021 2.0e-11 75.1 124 33.9
Solyc01g104520.3 Solanum lycopersicum HOM05D003578 ORTHO05D004021 4.4e-11 73.9 122 42.6
arahy.Tifrunner.gnm1.ann1.0Y2WZB Arachis hypogaea HOM05D003578 ORTHO05D004021 1.7e-10 72.0 140 30.0
Zm00001eb317570 Zea mays HOM05D003578 ORTHO05D004021 4.8e-10 70.5 130 31.5
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 1.6e-08 65.5 67 44.8
Nn1g08562 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.0e-07 62.8 117 30.8
Nn7g38100 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.3e-07 62.4 131 38.9
MCO01G050 Micromonas commoda HOM05D003578 ORTHO05D004021 5.0e-07 60.5 247 23.1
GSVIVG01023076001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.5e-06 58.9 46 56.5
Zm00001eb322170 Zea mays HOM05D003578 ORTHO05D004021 1.9e-06 58.5 84 33.3
GSVIVG01023027001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.5e-06 58.2 46 56.5
arahy.Tifrunner.gnm1.ann1.ZN95YA Arachis hypogaea HOM05D003578 ORTHO05D004021 9.5e-06 56.2 73 39.7


User provided reference genes

Program Settings