Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39789 Brassica carinata HOM05D003892 ORTHO05D004522 0.0e+00 1196.8 606 100.0
BolC8t50600H Brassica oleracea HOM05D003892 ORTHO05D004522 0.0e+00 1190.6 607 99.7
C08p29890 Brassica napus HOM05D003892 ORTHO05D004522 0.0e+00 1158.3 606 96.9
A09p47680 Brassica napus HOM05D003892 ORTHO05D004522 0.0e+00 1110.1 610 92.6
BraA09t40224Z Brassica rapa HOM05D003892 ORTHO05D004522 0.0e+00 1098.2 611 91.8
BcaB01g00163 Brassica carinata HOM05D003892 ORTHO05D004522 8.3e-303 1043.1 638 85.7
Sp5g07700 Schrenkiella parvula HOM05D003892 ORTHO05D004522 1.4e-297 1025.8 617 85.7
Thhalv10010226m.g Eutrema salsugineum HOM05D003892 ORTHO05D004522 8.3e-279 963.4 596 82.9
AL5G35820 Arabidopsis lyrata HOM05D003892 ORTHO05D004522 9.9e-272 939.9 616 80.2
CARHR164690 Cardamine hirsuta HOM05D003892 ORTHO05D004522 5.4e-270 934.1 606 79.5
BcaB02g08458 Brassica carinata HOM05D003892 ORTHO05D004522 1.2e-269 932.9 612 80.4
Carub.0005s2135 Capsella rubella HOM05D003892 ORTHO05D004522 1.1e-265 919.8 614 79.2
AT3G54750 Arabidopsis thaliana HOM05D003892 ORTHO05D004522 1.4e-265 919.5 590 79.7
A04p05070 Brassica napus HOM05D003892 ORTHO05D004522 1.5e-264 916.0 612 79.1
BraA04t16218Z Brassica rapa HOM05D003892 ORTHO05D004522 7.6e-264 913.7 612 78.6
BcaC02g09701 Brassica carinata HOM05D003892 ORTHO05D004522 1.3e-260 902.9 612 77.6
C04p37570 Brassica napus HOM05D003892 ORTHO05D004522 1.6e-258 896.0 612 77.1
Aa31LG11G3840 Aethionema arabicum HOM05D003892 ORTHO05D004522 9.3e-230 800.4 635 68.0
THA.LOC104825242 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 1.3e-210 736.9 627 64.4
THA.LOC104824220 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 1.4e-201 706.8 637 61.5
Aa31LG2G20030 Aethionema arabicum HOM05D003892 ORTHO05D004522 2.0e-171 606.7 557 61.0
Thecc.05G110400 Theobroma cacao HOM05D003892 ORTHO05D004522 2.6e-163 579.7 636 51.4
Ciclev10011278m.g Citrus clementina HOM05D003892 ORTHO05D004522 3.7e-162 575.9 636 51.4
COL.COLO4_29492 Corchorus olitorius HOM05D003892 ORTHO05D004522 1.2e-157 560.8 633 49.9
Gorai.002G233300 Gossypium raimondii HOM05D003892 ORTHO05D004522 4.4e-155 552.4 631 49.9
Gohir.D01G189600 Gossypium hirsutum HOM05D003892 ORTHO05D004522 6.4e-154 548.5 631 49.6
Gohir.A01G199500 Gossypium hirsutum HOM05D003892 ORTHO05D004522 3.2e-153 546.2 631 49.3
QL07p026283 Quercus lobata HOM05D003892 ORTHO05D004522 4.6e-152 542.3 637 48.4
Duzib106G1451 Durio zibethinus HOM05D003892 ORTHO05D004522 7.8e-152 541.6 633 48.7
Cfa017615 Carpinus fangiana HOM05D003892 ORTHO05D004522 9.6e-150 534.6 636 49.5
Duzib128G1914 Durio zibethinus HOM05D003892 ORTHO05D004522 1.4e-148 530.8 634 49.5
Gorai.009G395500 Gossypium raimondii HOM05D003892 ORTHO05D004522 1.4e-148 530.8 633 49.1
Potri.016G065600 Populus trichocarpa HOM05D003892 ORTHO05D004522 1.4e-148 530.8 636 48.1
CiPaw.10G021500 Carya illinoinensis HOM05D003892 ORTHO05D004522 1.8e-148 530.4 633 49.6
Potri.006G199200 Populus trichocarpa HOM05D003892 ORTHO05D004522 1.8e-148 530.4 632 49.4
TWI15G0645 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 8.9e-148 528.1 632 48.3
Gohir.D04G093300 Gossypium hirsutum HOM05D003892 ORTHO05D004522 2.0e-147 526.9 633 49.1
Manes.08G037500 Manihot esculenta HOM05D003892 ORTHO05D004522 6.4e-146 521.9 640 48.1
TAR633G1336 Trochodendron aralioides HOM05D003892 ORTHO05D004522 5.4e-145 518.8 643 48.2
Atru.chr8.1281 Acer truncatum HOM05D003892 ORTHO05D004522 2.3e-143 513.5 663 46.0
MD14G1044900 Malus domestica HOM05D003892 ORTHO05D004522 1.5e-142 510.8 634 46.4
Eucgr.A02543 Eucalyptus grandis HOM05D003892 ORTHO05D004522 2.6e-139 500.0 644 46.3
GSVIVG01015854001 Vitis vinifera HOM05D003892 ORTHO05D004522 7.6e-139 498.4 637 44.9
CANSAT64G1569 Cannabis sativa HOM05D003892 ORTHO05D004522 1.3e-138 497.7 635 46.9
CSS0037074 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 2.2e-138 496.9 639 47.1
Hma1.2p1_0304F.1_g119340 Hydrangea macrophylla HOM05D003892 ORTHO05D004522 8.4e-138 495.0 637 46.3
Haze_20130 Corylus avellana HOM05D003892 ORTHO05D004522 5.4e-137 492.3 693 43.4
MD12G1046200 Malus domestica HOM05D003892 ORTHO05D004522 9.3e-137 491.5 632 45.7
Prupe.7G089700 Prunus persica HOM05D003892 ORTHO05D004522 1.6e-136 490.7 637 45.8
Lj1C1061G1 Lonicera japonica HOM05D003892 ORTHO05D004522 3.3e-134 483.0 639 45.1
Nn2g14423 Nelumbo nucifera HOM05D003892 ORTHO05D004522 2.1e-133 480.3 647 45.9
PGR004G2391 Punica granatum HOM05D003892 ORTHO05D004522 7.1e-129 465.3 629 45.0
arahy.Tifrunner.gnm1.ann1.H4389H Arachis hypogaea HOM05D003892 ORTHO05D004522 2.1e-128 463.8 668 43.6
DCAR_013462 Daucus carota HOM05D003892 ORTHO05D004522 7.9e-128 461.8 620 43.4
arahy.Tifrunner.gnm1.ann1.IGZ3F9 Arachis hypogaea HOM05D003892 ORTHO05D004522 1.0e-127 461.5 619 44.4
Lj1g0007585 Lotus japonicus HOM05D003892 ORTHO05D004522 2.3e-127 460.3 615 45.4
Glyma.03G205000 Glycine max HOM05D003892 ORTHO05D004522 6.7e-127 458.8 635 44.1
Sabra16G0067100 Salix brachista HOM05D003892 ORTHO05D004522 1.9e-126 457.2 637 44.6
Lalb_Chr01g0017711 Lupinus albus HOM05D003892 ORTHO05D004522 2.5e-126 456.8 661 43.4
TPR.G34451 Trifolium pratense HOM05D003892 ORTHO05D004522 4.3e-126 456.1 631 43.3
Rhsim03G0058500 Rhododendron simsii HOM05D003892 ORTHO05D004522 7.4e-126 455.3 652 44.5
Glyma.19G202400 Glycine max HOM05D003892 ORTHO05D004522 2.1e-125 453.8 636 43.6
Actinidia03963 Actinidia chinensis HOM05D003892 ORTHO05D004522 2.8e-125 453.4 663 43.6
FAN05G2923 Fragaria x ananassa HOM05D003892 ORTHO05D004522 2.8e-125 453.4 630 43.0
Psat3g027080 Pisum sativum HOM05D003892 ORTHO05D004522 3.7e-125 453.0 642 43.0
Sc22g0003030 Simmondsia chinensis HOM05D003892 ORTHO05D004522 1.4e-124 451.1 639 44.3
Lalb_Chr25g0287841 Lupinus albus HOM05D003892 ORTHO05D004522 1.8e-124 450.7 636 43.6
Phvul.001G198500 Phaseolus vulgaris HOM05D003892 ORTHO05D004522 4.0e-124 449.5 633 43.4
AUR62038416 Chenopodium quinoa HOM05D003892 ORTHO05D004522 6.9e-124 448.7 621 43.8
Sed0022353 Sechium edule HOM05D003892 ORTHO05D004522 6.9e-124 448.7 635 42.8
ClCG10G017850 Citrullus lanatus HOM05D003892 ORTHO05D004522 9.0e-124 448.4 638 43.1
Medtr7g106900 Medicago truncatula HOM05D003892 ORTHO05D004522 1.2e-123 448.0 633 43.4
Sopen01g002690 Solanum pennellii HOM05D003892 ORTHO05D004522 2.0e-123 447.2 617 44.4
arahy.Tifrunner.gnm1.ann1.L9LT45 Arachis hypogaea HOM05D003892 ORTHO05D004522 2.6e-123 446.8 657 42.9
AUR62036307 Chenopodium quinoa HOM05D003892 ORTHO05D004522 7.6e-123 445.3 615 43.6
HanXRQChr13g0398781 Helianthus annuus HOM05D003892 ORTHO05D004522 7.6e-123 445.3 623 44.5
Solyc01g006700.3 Solanum lycopersicum HOM05D003892 ORTHO05D004522 1.3e-122 444.5 646 43.5
EL10Ac5g11803 Beta vulgaris HOM05D003892 ORTHO05D004522 2.2e-122 443.7 634 43.8
Ca_09081_v3 Cicer arietinum L. HOM05D003892 ORTHO05D004522 3.8e-122 443.0 642 42.8
HanXRQChr02g0052851 Helianthus annuus HOM05D003892 ORTHO05D004522 4.9e-122 442.6 616 44.6
PGSC0003DMG400021344 Solanum tuberosum HOM05D003892 ORTHO05D004522 1.4e-121 441.0 638 43.3
Sabra06G0153100 Salix brachista HOM05D003892 ORTHO05D004522 7.1e-121 438.7 632 44.1
TWI81G0594 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 9.3e-121 438.3 504 49.2
FAN05G3327 Fragaria x ananassa HOM05D003892 ORTHO05D004522 3.5e-120 436.4 661 41.0
FAN02G1525 Fragaria x ananassa HOM05D003892 ORTHO05D004522 4.6e-120 436.0 634 42.1
CAN.G388.52 Capsicum annuum HOM05D003892 ORTHO05D004522 6.7e-119 432.2 654 42.5
FAN14G4612 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.5e-118 431.0 661 40.5
RcHm_v2.0_Chr3g0477411 Rosa chinensis HOM05D003892 ORTHO05D004522 1.5e-118 431.0 629 41.5
Hund10790 Selenicereus undatus HOM05D003892 ORTHO05D004522 5.7e-118 429.1 643 43.1
VMungo1383G0340 Vigna mungo HOM05D003892 ORTHO05D004522 3.7e-117 426.4 634 42.0
Cc06_g06980 Coffea canephora HOM05D003892 ORTHO05D004522 1.8e-116 424.1 608 43.4
MELO3C009588.2 Cucumis melo HOM05D003892 ORTHO05D004522 2.4e-116 423.7 641 42.3
Oeu058130.1 Olea europaea HOM05D003892 ORTHO05D004522 5.3e-116 422.5 656 40.4
Lj6g0017825 Lotus japonicus HOM05D003892 ORTHO05D004522 6.9e-116 422.2 618 44.3
CsaV3_3G038440 Cucumis sativus L. HOM05D003892 ORTHO05D004522 1.5e-115 421.0 641 42.4
ECA233G3816 Erigeron canadensis HOM05D003892 ORTHO05D004522 3.8e-114 416.4 614 42.8
Lsat_1_v5_gn_6_34240 Lactuca sativa HOM05D003892 ORTHO05D004522 6.5e-114 415.6 614 42.7
Dinv25081 Davidia involucrata HOM05D003892 ORTHO05D004522 1.4e-113 414.5 506 49.0
Aqoxy2G02397 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 1.3e-111 407.9 641 40.7
arahy.Tifrunner.gnm1.ann1.P5VIE6 Arachis hypogaea HOM05D003892 ORTHO05D004522 1.9e-110 404.1 634 41.3
Aqoxy1G00583 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 2.5e-110 403.7 649 41.6
MSTRG.5909 Avicennia marina HOM05D003892 ORTHO05D004522 4.3e-110 402.9 623 41.1
Cpa.g.sc222.13 Carica papaya HOM05D003892 ORTHO05D004522 5.7e-110 402.5 568 43.7
PSO210G1032 Papaver somniferum HOM05D003892 ORTHO05D004522 5.7e-110 402.5 634 40.2
PSO832G2838 Papaver somniferum HOM05D003892 ORTHO05D004522 1.4e-108 397.9 653 40.0
Nitab4.5_0003430g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 1.5e-107 394.4 624 42.0
CDE07G1113 Ceratophyllum demersum HOM05D003892 ORTHO05D004522 5.9e-107 392.5 632 41.5
ECA238G3852 Erigeron canadensis HOM05D003892 ORTHO05D004522 7.7e-107 392.1 618 39.2
FvH4_6g21040 Fragaria vesca HOM05D003892 ORTHO05D004522 1.0e-106 391.7 562 42.2
Ah.12g059580 Amaranthus hybridus HOM05D003892 ORTHO05D004522 1.7e-106 391.0 639 39.7
SalBow1G1519 Salvia bowleyana HOM05D003892 ORTHO05D004522 1.9e-105 387.5 602 40.7
SalBow1G7123 Salvia bowleyana HOM05D003892 ORTHO05D004522 4.2e-105 386.3 602 40.7
SGA_v2.0_scaffold112G31566 Striga asiatica HOM05D003892 ORTHO05D004522 6.1e-104 382.5 608 40.6
Migut.J00728 Erythranthe guttata HOM05D003892 ORTHO05D004522 1.4e-103 381.3 632 38.9
HPP92_013933 Vanilla planifolia HOM05D003892 ORTHO05D004522 1.8e-103 380.9 626 38.8
MBI11_g43834_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 2.3e-103 380.6 618 42.2
TAR636G2427 Trochodendron aralioides HOM05D003892 ORTHO05D004522 1.5e-102 377.9 394 49.7
SGA_v2.0_scaffold31G12827 Striga asiatica HOM05D003892 ORTHO05D004522 3.7e-101 373.2 623 38.8
Peaxi162Scf00751g00063 Petunia axillaris HOM05D003892 ORTHO05D004522 6.3e-101 372.5 611 40.9
Peaxi162Scf00210g00093 Petunia axillaris HOM05D003892 ORTHO05D004522 8.2e-101 372.1 611 40.9
Sed0022528 Sechium edule HOM05D003892 ORTHO05D004522 3.8e-98 363.2 635 38.9
Dinv11899 Davidia involucrata HOM05D003892 ORTHO05D004522 3.2e-97 360.1 406 50.7
Lsat_1_v5_gn_2_121661 Lactuca sativa HOM05D003892 ORTHO05D004522 3.2e-97 360.1 599 40.2
ATR0580G241 Amborella trichopoda HOM05D003892 ORTHO05D004522 1.6e-96 357.8 613 36.5
Zm00001eb032200 Zea mays HOM05D003892 ORTHO05D004522 1.4e-92 344.7 613 37.7
Os12g0621700 Oryza sativa ssp. japonica HOM05D003892 ORTHO05D004522 9.1e-92 342.0 611 37.0
MBI11_g33439_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 3.1e-84 317.0 351 52.4
Gohir.A04G055942 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.9e-81 307.8 323 50.5
Medtr7g029625 Medicago truncatula HOM05D003892 ORTHO05D004522 9.4e-81 305.4 623 37.6
Nitab4.5_0000300g0030 Nicotiana tabacum HOM05D003892 ORTHO05D004522 8.0e-72 275.8 500 38.6
GSVIVG01020969001 Vitis vinifera HOM05D003892 ORTHO05D004522 2.3e-71 274.2 379 44.9
Sed0005279 Sechium edule HOM05D000521 ORTHO05D004522 6.8e-71 272.7 397 43.8
Actinidia37779 Actinidia chinensis HOM05D003892 ORTHO05D004522 3.4e-70 270.4 255 52.2
Gohir.D07G211433 Gossypium hirsutum HOM05D003892 ORTHO05D004522 2.0e-67 261.2 418 43.1
CSS0004478 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 1.1e-65 255.4 376 45.7
vmacro07513 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 1.4e-60 238.4 384 40.6
Pp3c26_8020 Physcomitrium patens HOM05D003892 ORTHO05D004522 1.2e-59 235.3 624 30.9
SMO351G0585 Selaginella moellendorffii HOM05D003892 ORTHO05D004522 1.9e-57 228.0 565 31.5
Pp3c4_31220 Physcomitrium patens HOM05D003892 ORTHO05D004522 5.2e-55 219.9 376 36.4
AagrBONN_evm.TU.Sc2ySwM_228.3493 Anthoceros agrestis HOM05D003892 ORTHO05D004522 3.4e-54 217.2 356 36.5
arahy.Tifrunner.gnm1.ann1.75SLRD Arachis hypogaea HOM05D003892 ORTHO05D004522 2.2e-53 214.5 260 46.2
Mapoly0011s0047 Marchantia polymorpha HOM05D003892 ORTHO05D004522 9.2e-52 209.1 569 30.9
SHI28320 Sapria himalayana HOM05D003892 ORTHO05D004522 4.0e-47 193.7 578 27.9
unitig_26.g9151 Utricularia gibba HOM05D003892 ORTHO05D004522 2.0e-46 191.4 242 43.0
unitig_749.g14208 Utricularia gibba HOM05D003892 ORTHO05D004522 3.2e-44 184.1 238 42.9
Gohir.A04G055921 Gossypium hirsutum HOM05D003892 ORTHO05D004522 4.6e-43 180.3 256 47.7
Nitab4.5_0000429g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 1.7e-42 178.3 331 39.3
Cfa017831 Carpinus fangiana HOM05D003892 ORTHO05D004522 3.0e-42 177.6 202 47.0
CSS0016552 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 5.6e-33 146.7 181 44.8
arahy.Tifrunner.gnm1.ann1.R2HNIM Arachis hypogaea HOM05D003892 ORTHO05D004522 1.6e-32 145.2 299 35.5
arahy.Tifrunner.gnm1.ann1.C1NY7P Arachis hypogaea HOM05D003892 ORTHO05D004522 1.1e-31 142.5 320 35.3
GSVIVG01020973001 Vitis vinifera HOM05D003892 ORTHO05D004522 2.2e-29 134.8 105 58.1
arahy.Tifrunner.gnm1.ann1.84GXZP Arachis hypogaea HOM05D003892 ORTHO05D004522 3.8e-29 134.0 271 37.3
CBR_g20103 Chara braunii HOM05D003892 ORTHO05D004522 4.2e-28 130.6 373 29.5
GSVIVG01020966001 Vitis vinifera HOM05D003892 ORTHO05D004522 2.7e-27 127.9 95 61.1
vmacro07512 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 1.3e-26 125.6 253 38.7
HPP92_012152 Vanilla planifolia HOM05D003892 ORTHO05D004522 3.3e-25 120.9 120 51.7
Nitab4.5_0003430g0040 Nicotiana tabacum HOM05D003892 ORTHO05D004522 1.3e-18 99.0 223 36.3
TAR636G1189 Trochodendron aralioides HOM05D003892 ORTHO05D004522 2.3e-18 98.2 191 42.4
Aa31LG2G20020 Aethionema arabicum HOM05D003892 ORTHO05D004522 1.5e-17 95.5 79 70.9
arahy.Tifrunner.gnm1.ann1.Z2YKN3 Arachis hypogaea HOM05D003892 ORTHO05D004522 8.1e-16 89.7 225 34.2
SEGI_30208 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 1.1e-15 89.4 71 57.7
arahy.Tifrunner.gnm1.ann1.U7JCXR Arachis hypogaea HOM05D003892 ORTHO05D004522 2.4e-15 88.2 207 36.2
Aqoxy2G02169 Aquilegia oxysepala HOM05D001785 ORTHO05D001933 3.1e-15 87.8 266 31.6
SEGI_25684 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 2.9e-13 81.3 270 31.1
Cre03.g197600 Chlamydomonas reinhardtii HOM05D003892 ORTHO05D004522 1.2e-11 75.9 297 26.6
Sabra17G0067200 Salix brachista HOM05D003892 ORTHO05D004522 3.7e-08 64.3 89 41.6
Actinidia37778 Actinidia chinensis HOM05D003892 ORTHO05D004522 6.2e-08 63.5 145 36.6
arahy.Tifrunner.gnm1.ann1.RB1WVK Arachis hypogaea HOM05D003892 ORTHO05D004522 5.8e-06 57.0 206 30.6
Ah.02g116070 Amaranthus hybridus HOM05D003892 ORTHO05D004522 1.0e-05 56.2 89 36.0


User provided reference genes

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