Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39710 Brassica carinata HOM05D000639 ORTHO05D015473 5.1e-102 374.4 187 100.0
BcaC02g10301 Brassica carinata HOM05D000797 ORTHO05D015473 5.7e-93 344.4 174 97.1
C08p04620 Brassica napus HOM05D000797 ORTHO05D015473 6.2e-92 340.9 185 91.9
BcaC07g39709 Brassica carinata HOM05D000639 ORTHO05D015473 1.2e-90 336.7 202 87.1
BcaC07g37096 Brassica carinata HOM05D000797 ORTHO05D015473 2.6e-82 308.9 195 83.6
BolC7t44670H Brassica oleracea HOM05D000639 ORTHO05D015473 1.7e-81 306.2 184 84.8
BolC8t50484H Brassica oleracea HOM05D000797 ORTHO05D015473 1.9e-80 302.8 185 84.3
BraA03t10242Z Brassica rapa HOM05D000639 ORTHO05D015473 5.1e-78 294.7 156 92.9
BcaC03g15480 Brassica carinata HOM05D000797 ORTHO05D015473 6.7e-70 267.7 181 78.5
BcaC06g34973 Brassica carinata HOM05D000797 ORTHO05D015473 4.3e-40 168.7 109 81.7
BraA03t11017Z Brassica rapa HOM05D000797 ORTHO05D015473 8.3e-20 101.3 80 66.2
A03p17430 Brassica napus HOM05D000797 ORTHO05D102316 9.2e-19 97.8 55 85.5
BolC7t44488H Brassica oleracea HOM05D000639 ORTHO05D004019 1.3e-17 94.0 90 57.8
C07p39650 Brassica napus HOM05D000639 ORTHO05D004019 1.7e-17 93.6 90 57.8
THA.LOC104818926 Tarenaya hassleriana HOM05D000639 ORTHO05D004019 3.9e-17 92.4 90 56.7
Lalb_Chr15g0083501 Lupinus albus HOM05D000639 ORTHO05D004019 5.1e-17 92.0 90 55.6
A06p38610 Brassica napus HOM05D000639 ORTHO05D004019 8.6e-17 91.3 90 56.7
Thhalv10003986m.g Eutrema salsugineum HOM05D000639 ORTHO05D004019 8.6e-17 91.3 90 56.7
AL8G22390 Arabidopsis lyrata HOM05D000639 ORTHO05D004019 1.1e-16 90.9 101 52.5
Ca_21493_v3 Cicer arietinum L. HOM05D000639 ORTHO05D004019 1.1e-16 90.9 114 48.2
Sp2g19400 Schrenkiella parvula HOM05D000639 ORTHO05D004019 1.1e-16 90.9 90 56.7
AT5G49020 Arabidopsis thaliana HOM05D000639 ORTHO05D004019 1.5e-16 90.5 101 51.5
A02p37840 Brassica napus HOM05D000639 ORTHO05D004019 1.5e-16 90.5 90 55.6
BraA02t08766Z Brassica rapa HOM05D000639 ORTHO05D004019 1.5e-16 90.5 90 55.6
TPR.G13846 Trifolium pratense HOM05D000639 ORTHO05D004019 1.5e-16 90.5 99 50.5
Phvul.003G105500 Phaseolus vulgaris HOM05D000639 ORTHO05D004019 1.9e-16 90.1 90 54.4
VMungo1215G1558 Vigna mungo HOM05D000639 ORTHO05D004019 1.9e-16 90.1 90 54.4
CARHR286220 Cardamine hirsuta HOM05D000639 ORTHO05D004019 2.5e-16 89.7 90 55.6
Glyma.09G044700 Glycine max HOM05D000639 ORTHO05D004019 2.5e-16 89.7 91 52.7
arahy.Tifrunner.gnm1.ann1.KA48HN Arachis hypogaea HOM05D000639 ORTHO05D004019 3.3e-16 89.4 109 47.7
arahy.Tifrunner.gnm1.ann1.LR2V9P Arachis hypogaea HOM05D000639 ORTHO05D004019 3.3e-16 89.4 109 47.7
BcaC03g17691 Brassica carinata HOM05D000639 ORTHO05D004019 3.3e-16 89.4 90 54.4
Carub.0008s0884 Capsella rubella HOM05D000639 ORTHO05D004019 3.3e-16 89.4 101 50.5
Glyma.07G247300 Glycine max HOM05D000639 ORTHO05D004019 3.3e-16 89.4 109 47.7
TPR.G3204 Trifolium pratense HOM05D000639 ORTHO05D004019 3.3e-16 89.4 109 47.7
C02p57000 Brassica napus HOM05D000639 ORTHO05D004019 4.3e-16 89.0 90 54.4
BolC2t11770H Brassica oleracea HOM05D000639 ORTHO05D004019 4.3e-16 89.0 90 54.4
Glyma.15G148200 Glycine max HOM05D000639 ORTHO05D004019 4.3e-16 89.0 110 46.4
Glyma.17G026500 Glycine max HOM05D000639 ORTHO05D004019 4.3e-16 89.0 109 47.7
Medtr4g119900 Medicago truncatula HOM05D000639 ORTHO05D004019 4.3e-16 89.0 109 47.7
THA.LOC104802688 Tarenaya hassleriana HOM05D000639 ORTHO05D004019 4.3e-16 89.0 90 54.4
Duzib212G0808 Durio zibethinus HOM05D000639 ORTHO05D004019 5.6e-16 88.6 93 51.6
Ca_01937_v3 Cicer arietinum L. HOM05D000639 ORTHO05D004019 7.3e-16 88.2 96 51.0
Lalb_Chr13g0303571 Lupinus albus HOM05D000639 ORTHO05D004019 7.3e-16 88.2 89 53.9
Phvul.009G248200 Phaseolus vulgaris HOM05D000639 ORTHO05D004019 7.3e-16 88.2 91 51.6
VMungo1309G0809 Vigna mungo HOM05D000639 ORTHO05D004019 7.3e-16 88.2 91 51.6
Aqoxy2G02982 Aquilegia oxysepala HOM05D000639 ORTHO05D004019 9.5e-16 87.8 90 53.3
CiPaw.01G148600 Carya illinoinensis HOM05D000639 ORTHO05D004019 9.5e-16 87.8 109 46.8
COL.COLO4_13868 Corchorus olitorius HOM05D000639 ORTHO05D004019 9.5e-16 87.8 90 52.2
Gorai.006G076000 Gossypium raimondii HOM05D000639 ORTHO05D004019 9.5e-16 87.8 90 52.2
Medtr2g436780 Medicago truncatula HOM05D000639 ORTHO05D004019 9.5e-16 87.8 96 53.1
Duzib151G0063 Durio zibethinus HOM05D000639 ORTHO05D004019 1.2e-15 87.4 90 52.2
Gohir.A09G062500 Gossypium hirsutum HOM05D000639 ORTHO05D004019 1.2e-15 87.4 90 52.2
FvH4_4g18050 Fragaria vesca HOM05D000639 ORTHO05D004019 1.6e-15 87.0 90 51.1
FAN07G2352 Fragaria x ananassa HOM05D000639 ORTHO05D005322 1.6e-15 87.0 90 51.1
FAN12G1449 Fragaria x ananassa HOM05D000639 ORTHO05D004019 1.6e-15 87.0 90 51.1
Lj4g0016454 Lotus japonicus HOM05D000639 ORTHO05D004019 1.6e-15 87.0 90 52.2
RcHm_v2.0_Chr4g0422261 Rosa chinensis HOM05D000639 ORTHO05D004019 1.6e-15 87.0 90 51.1
Cpa.g.sc16.172 Carica papaya HOM05D000639 ORTHO05D004019 2.1e-15 86.7 108 47.2
ClCG06G005130 Citrullus lanatus HOM05D000639 ORTHO05D004019 2.1e-15 86.7 90 53.3
Haze_01200 Corylus avellana HOM05D000639 ORTHO05D004019 2.1e-15 86.7 107 47.7
MELO3C021330.2 Cucumis melo HOM05D000639 ORTHO05D004019 2.1e-15 86.7 90 53.3
CsaV3_6G017170 Cucumis sativus L. HOM05D000639 ORTHO05D004019 2.1e-15 86.7 90 53.3
Gorai.006G262700 Gossypium raimondii HOM05D000639 ORTHO05D004019 2.1e-15 86.7 90 52.2
Lalb_Chr12g0196591 Lupinus albus HOM05D000639 ORTHO05D004019 2.1e-15 86.7 89 52.8
Cfa015385 Carpinus fangiana HOM05D000639 ORTHO05D004019 3.6e-15 85.9 109 46.8
DCAR_027075 Daucus carota HOM05D000639 ORTHO05D004019 3.6e-15 85.9 132 43.2
FAN17G3001 Fragaria x ananassa HOM05D000639 ORTHO05D004019 3.6e-15 85.9 90 50.0
MD16G1168900 Malus domestica HOM05D000639 ORTHO05D004019 3.6e-15 85.9 90 52.2
Nn3g21443 Nelumbo nucifera HOM05D000639 ORTHO05D004019 3.6e-15 85.9 90 52.2
MSTRG.3915 Avicennia marina HOM05D000639 ORTHO05D004019 4.7e-15 85.5 114 46.5
CARHR081540 Cardamine hirsuta HOM05D000639 ORTHO05D004019 4.7e-15 85.5 90 53.3
CDE08G1566 Ceratophyllum demersum HOM05D000639 ORTHO05D004019 4.7e-15 85.5 109 45.9
Thhalv10020486m.g Eutrema salsugineum HOM05D000639 ORTHO05D004019 4.7e-15 85.5 90 52.2
FAN12G0276 Fragaria x ananassa HOM05D000639 ORTHO05D004019 4.7e-15 85.5 90 50.0
Lj6g0003576 Lotus japonicus HOM05D000639 ORTHO05D004019 4.7e-15 85.5 90 53.3
Aa31LG5G17500 Aethionema arabicum HOM05D000639 ORTHO05D004019 6.2e-15 85.1 91 52.7
Ciclev10004703m.g Citrus clementina HOM05D000639 ORTHO05D004019 6.2e-15 85.1 90 52.2
Gohir.A09G239000 Gossypium hirsutum HOM05D000639 ORTHO05D004019 8.1e-15 84.7 109 45.0
HanXRQChr03g0080961 Helianthus annuus HOM05D000639 ORTHO05D004019 8.1e-15 84.7 90 51.1
Lsat_1_v5_gn_5_53081 Lactuca sativa HOM05D000639 ORTHO05D004019 8.1e-15 84.7 90 52.2
Manes.03G195300 Manihot esculenta HOM05D000639 ORTHO05D004019 8.1e-15 84.7 90 52.2
Prupe.1G136600 Prunus persica HOM05D000639 ORTHO05D004019 8.1e-15 84.7 96 49.0
BcaC05g29770 Brassica carinata HOM05D000639 ORTHO05D004019 1.1e-14 84.3 90 51.1
CDE02G3502 Ceratophyllum demersum HOM05D000639 ORTHO05D004019 1.1e-14 84.3 90 52.2
Nn4g25839 Nelumbo nucifera HOM05D000639 ORTHO05D004019 1.1e-14 84.3 90 52.2
Potri.010G014600 Populus trichocarpa HOM05D000639 ORTHO05D004019 1.1e-14 84.3 90 52.2
Atru.chr4.2839 Acer truncatum HOM05D000639 ORTHO05D004019 1.4e-14 84.0 89 52.8
AT3G06930 Arabidopsis thaliana HOM05D000639 ORTHO05D004019 1.4e-14 84.0 90 51.1
CiPaw.02G082800 Carya illinoinensis HOM05D000639 ORTHO05D004019 1.4e-14 84.0 108 46.3
Hma1.2p1_0078F.1_g040530 Hydrangea macrophylla HOM05D000639 ORTHO05D004019 1.4e-14 84.0 84 52.4
Rhsim02G0009000 Rhododendron simsii HOM05D000639 ORTHO05D004019 1.4e-14 84.0 107 45.8
Sp3g05880 Schrenkiella parvula HOM05D000639 ORTHO05D004019 1.4e-14 84.0 90 51.1
AL3G18100 Arabidopsis lyrata HOM05D000639 ORTHO05D004019 1.8e-14 83.6 96 49.0
HanXRQChr13g0411281 Helianthus annuus HOM05D000639 ORTHO05D004019 1.8e-14 83.6 90 52.2
MD13G1168500 Malus domestica HOM05D000639 ORTHO05D004019 1.8e-14 83.6 94 51.1
Actinidia01464 Actinidia chinensis HOM05D000639 ORTHO05D004019 2.3e-14 83.2 90 50.0
Carub.0003s0645 Capsella rubella HOM05D000639 ORTHO05D004019 2.3e-14 83.2 90 50.0
ATR0796G199 Amborella trichopoda HOM05D000639 ORTHO05D004019 3.1e-14 82.8 90 51.1
CANSAT78G0502 Cannabis sativa HOM05D000639 ORTHO05D004019 3.1e-14 82.8 109 44.0
SalBow2G1467 Salvia bowleyana HOM05D000639 ORTHO05D004019 3.1e-14 82.8 109 45.9
Hund24894 Selenicereus undatus HOM05D000639 ORTHO05D004019 4.0e-14 82.4 93 48.4
GSVIVG01017761001 Vitis vinifera HOM05D000639 ORTHO05D004019 4.0e-14 82.4 90 51.1
CSS0034707 Camellia sinensis var. sinensis HOM05D000639 ORTHO05D004019 5.2e-14 82.0 90 50.0
Gohir.D10G170500 Gossypium hirsutum HOM05D000639 ORTHO05D004019 5.2e-14 82.0 90 52.2
Gorai.011G190400 Gossypium raimondii HOM05D000639 ORTHO05D004019 5.2e-14 82.0 90 52.2
Psat4g027520 Pisum sativum HOM05D000639 ORTHO05D004019 5.2e-14 82.0 109 45.0
QL06p008928 Quercus lobata HOM05D000639 ORTHO05D004019 5.2e-14 82.0 109 45.0
TAR365G0782 Trochodendron aralioides HOM05D000639 ORTHO05D004019 5.2e-14 82.0 98 46.9
vmacro15235 Vaccinium macrocarpon HOM05D000639 ORTHO05D004019 5.2e-14 82.0 107 44.9
Rhsim04G0222300 Rhododendron simsii HOM05D000639 ORTHO05D004019 8.9e-14 81.3 108 43.5
AUR62028692 Chenopodium quinoa HOM05D000639 ORTHO05D004019 1.2e-13 80.9 90 51.1
Gohir.A10G164200 Gossypium hirsutum HOM05D000639 ORTHO05D004019 1.2e-13 80.9 90 51.1
Lj6C676T4 Lonicera japonica HOM05D000639 ORTHO05D004019 1.2e-13 80.9 109 43.1
vmacro08153 Vaccinium macrocarpon HOM05D000639 ORTHO05D004019 1.2e-13 80.9 109 43.1
Actinidia40256 Actinidia chinensis HOM05D000639 ORTHO05D004019 1.5e-13 80.5 90 48.9
ECA240G4511 Erigeron canadensis HOM05D000639 ORTHO05D004019 1.5e-13 80.5 96 46.9
Eucgr.B01318 Eucalyptus grandis HOM05D000639 ORTHO05D004019 1.5e-13 80.5 89 50.6
PGR031G2129 Punica granatum HOM05D000639 ORTHO05D004019 1.5e-13 80.5 90 50.0
SEGI_12073 Sequoiadendron giganteum HOM05D000639 ORTHO05D004019 1.5e-13 80.5 114 45.6
Sc19g0005320 Simmondsia chinensis HOM05D000639 ORTHO05D004019 1.5e-13 80.5 90 52.2
BcaC05g29823 Brassica carinata HOM05D000639 ORTHO05D004019 2.0e-13 80.1 90 51.1
A05p41240 Brassica napus HOM05D000639 ORTHO05D004019 2.0e-13 80.1 90 51.1
BolC5t34700H Brassica oleracea HOM05D000639 ORTHO05D004019 2.0e-13 80.1 90 51.1
BraA05t22847Z Brassica rapa HOM05D000639 ORTHO05D004019 2.0e-13 80.1 90 51.1
Migut.G00162 Erythranthe guttata HOM05D000639 ORTHO05D004019 2.0e-13 80.1 109 45.0
MBI19_g29220_MAGBIO Magnolia biondii HOM05D000639 ORTHO05D004019 2.0e-13 80.1 90 51.1
Os07g0671700 Oryza sativa ssp. japonica HOM05D000639 ORTHO05D004019 2.0e-13 80.1 90 50.0
TWI09G1119 Tripterygium wilfordii HOM05D000639 ORTHO05D004019 2.0e-13 80.1 90 46.7
C05p60460 Brassica napus HOM05D000639 ORTHO05D004019 2.6e-13 79.7 90 50.0
PSO210G5853 Papaver somniferum HOM05D000639 ORTHO05D004019 2.6e-13 79.7 90 51.1
PSO302G0100 Papaver somniferum HOM05D000639 ORTHO05D004019 2.6e-13 79.7 90 51.1
TWI73G0330 Tripterygium wilfordii HOM05D000639 ORTHO05D004019 2.6e-13 79.7 90 46.7
Cc03_g01920 Coffea canephora HOM05D000639 ORTHO05D004019 3.4e-13 79.3 109 44.0
Oeu029702.2 Olea europaea HOM05D000639 ORTHO05D004019 5.8e-13 78.6 90 50.0
Thecc.04G284900 Theobroma cacao HOM05D000639 ORTHO05D004019 5.8e-13 78.6 82 52.4
Oeu027725.1 Olea europaea HOM05D000639 ORTHO05D004019 7.6e-13 78.2 127 42.5
unitig_748.g8732 Utricularia gibba HOM05D000639 ORTHO05D004019 7.6e-13 78.2 84 50.0
Ah.04g164890 Amaranthus hybridus HOM05D000639 ORTHO05D004019 9.9e-13 77.8 93 48.4
Zm00001eb330380 Zea mays HOM05D000639 ORTHO05D004019 9.9e-13 77.8 117 41.9
EL10Ac3g06602 Beta vulgaris HOM05D000639 ORTHO05D004019 2.2e-12 76.6 93 48.4
TAR362G0702 Trochodendron aralioides HOM05D000639 ORTHO05D004019 2.2e-12 76.6 90 47.8
Zm00001eb111180 Zea mays HOM05D000639 ORTHO05D004019 3.7e-12 75.9 94 50.0
SGA_v2.0_scaffold147G36295 Striga asiatica HOM05D000639 ORTHO05D004019 4.9e-12 75.5 89 48.3
MSTRG.10095 Avicennia marina HOM05D000639 ORTHO05D004019 6.4e-12 75.1 109 41.3
AUR62008114 Chenopodium quinoa HOM05D000639 ORTHO05D004019 6.4e-12 75.1 90 48.9
HPP92_000402 Vanilla planifolia HOM05D000639 ORTHO05D004019 6.4e-12 75.1 90 46.7
CSS0043025 Camellia sinensis var. sinensis HOM05D000639 ORTHO05D004019 8.4e-12 74.7 109 41.3
Gohir.D09G239900 Gossypium hirsutum HOM05D000639 ORTHO05D004019 1.9e-11 73.6 82 50.0
Lj3A817G85 Lonicera japonica HOM05D000639 ORTHO05D004019 5.4e-11 72.0 89 46.1
Lj3C819G5 Lonicera japonica HOM05D000639 ORTHO05D004019 5.4e-11 72.0 89 46.1
CSS0034341 Camellia sinensis var. sinensis HOM05D000639 ORTHO05D004019 2.7e-10 69.7 84 45.2
Nitab4.5_0000570g0130 Nicotiana tabacum HOM05D000639 ORTHO05D004019 1.0e-09 67.8 102 42.2
Nitab4.5_0003466g0120 Nicotiana tabacum HOM05D000639 ORTHO05D004019 1.0e-09 67.8 102 42.2
CSS0036548 Camellia sinensis var. sinensis HOM05D000639 ORTHO05D004019 1.3e-09 67.4 107 39.3
Pp3c1_7870 Physcomitrium patens HOM05D000639 ORTHO05D004019 1.3e-09 67.4 89 41.6
Solyc12g099560.2 Solanum lycopersicum HOM05D000639 ORTHO05D004019 1.3e-09 67.4 83 48.2
Sopen12g034240 Solanum pennellii HOM05D000639 ORTHO05D004019 1.3e-09 67.4 83 48.2
PGSC0003DMG400004710 Solanum tuberosum HOM05D000639 ORTHO05D004019 1.3e-09 67.4 83 48.2
CSS0050135 Camellia sinensis var. sinensis HOM05D000639 ORTHO05D004019 1.7e-09 67.0 84 45.2
Peaxi162Scf00086g00431 Petunia axillaris HOM05D000639 ORTHO05D004019 1.7e-09 67.0 86 45.3
DCAR_023284 Daucus carota HOM05D000639 ORTHO05D004019 6.6e-09 65.1 136 35.3
CAN.G484.33 Capsicum annuum HOM05D000639 ORTHO05D004019 1.1e-08 64.3 89 47.2
Nitab4.5_0001904g0120 Nicotiana tabacum HOM05D000639 ORTHO05D004019 1.1e-08 64.3 82 46.3
Nitab4.5_0001233g0100 Nicotiana tabacum HOM05D000639 ORTHO05D004019 1.9e-08 63.5 82 46.3
AagrBONN_evm.TU.Sc2ySwM_228.3515 Anthoceros agrestis HOM05D000639 ORTHO05D004019 2.5e-08 63.2 64 48.4
Actinidia14303 Actinidia chinensis HOM05D000639 ORTHO05D004019 3.3e-08 62.8 85 42.4
Solyc05g054240.3 Solanum lycopersicum HOM05D000639 ORTHO05D004019 4.3e-08 62.4 82 46.3
Sopen05g032730 Solanum pennellii HOM05D000639 ORTHO05D004019 4.3e-08 62.4 82 46.3
PGSC0003DMG400008452 Solanum tuberosum HOM05D000639 ORTHO05D004019 1.6e-07 60.5 82 45.1
Lj6C675G15 Lonicera japonica HOM05D000639 ORTHO05D004019 2.1e-07 60.1 54 55.6
CAN.G449.33 Capsicum annuum HOM05D000639 ORTHO05D004019 2.8e-07 59.7 101 39.6
Peaxi162Scf00576g00011 Petunia axillaris HOM05D000639 ORTHO05D004019 2.8e-07 59.7 103 38.8
SMO118G0363 Selaginella moellendorffii HOM05D000639 ORTHO05D004019 2.8e-07 59.7 105 39.0


User provided reference genes

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