Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39606 Brassica carinata HOM05D002205 ORTHO05D018573 1.6e-137 492.7 236 100.0
BcaC03g14864 Brassica carinata HOM05D002205 ORTHO05D018573 8.8e-75 284.3 213 69.0
BolC8t50387H Brassica oleracea HOM05D002205 ORTHO05D018573 3.2e-69 265.8 126 100.0
C08p27660 Brassica napus HOM05D002205 ORTHO05D018573 1.1e-61 240.7 119 96.6
A02p18250 Brassica napus HOM05D002205 ORTHO05D018573 2.3e-59 233.0 136 85.3
C02p23320 Brassica napus HOM05D002205 ORTHO05D018573 2.6e-58 229.6 122 90.2
BcaC03g15881 Brassica carinata HOM05D003212 ORTHO05D017586 3.5e-39 166.0 198 52.0
BcaC05g27062 Brassica carinata HOM05D002205 ORTHO05D004847 2.9e-38 162.9 183 51.9
C05p29210 Brassica napus HOM05D002205 ORTHO05D004847 2.9e-38 162.9 183 51.9
BolC5t31653H Brassica oleracea HOM05D002205 ORTHO05D004847 2.9e-38 162.9 183 51.9
BraA09t39142Z Brassica rapa HOM05D002205 ORTHO05D004847 8.6e-38 161.4 183 51.9
Sp1g26160 Schrenkiella parvula HOM05D002205 ORTHO05D004847 2.5e-37 159.8 183 51.4
A09p36150 Brassica napus HOM05D002205 ORTHO05D004847 4.3e-37 159.1 183 51.4
CARHR029690 Cardamine hirsuta HOM05D002205 ORTHO05D004847 5.6e-37 158.7 183 51.9
Thhalv10008197m.g Eutrema salsugineum HOM05D002205 ORTHO05D004847 7.2e-37 158.3 183 51.4
A08p24530 Brassica napus HOM05D002205 ORTHO05D004847 1.6e-36 157.1 183 51.9
BcaB07g32640 Brassica carinata HOM05D002205 ORTHO05D004847 2.1e-36 156.8 209 45.9
AT1G30300 Arabidopsis thaliana HOM05D002205 ORTHO05D004847 2.8e-36 156.4 183 51.4
FAN21G0057 Fragaria x ananassa HOM05D002205 ORTHO05D004847 4.7e-36 155.6 183 48.6
BraA08t34409Z Brassica rapa HOM05D002205 ORTHO05D004847 6.1e-36 155.2 183 51.4
Aa31LG6G5440 Aethionema arabicum HOM05D002205 ORTHO05D004847 8.0e-36 154.8 183 50.3
AL1G44250 Arabidopsis lyrata HOM05D002205 ORTHO05D004847 8.0e-36 154.8 183 50.8
BcaC01g00182 Brassica carinata HOM05D002205 ORTHO05D004847 1.4e-35 154.1 183 50.8
BolC3t19922H Brassica oleracea HOM05D002205 ORTHO05D004847 1.4e-35 154.1 183 50.8
Carub.0001s2853 Capsella rubella HOM05D002205 ORTHO05D004847 1.4e-35 154.1 183 51.4
BcaB03g12208 Brassica carinata HOM05D002205 ORTHO05D004847 3.0e-35 152.9 183 50.8
C03p76660 Brassica napus HOM05D002205 ORTHO05D004847 5.2e-35 152.1 183 50.3
Hma1.2p1_0318F.1_g123750 Hydrangea macrophylla HOM05D002205 ORTHO05D004847 6.8e-35 151.8 183 48.6
Zm00001eb031800 Zea mays HOM05D002205 ORTHO05D004847 6.8e-35 151.8 195 47.7
FAN25G1086 Fragaria x ananassa HOM05D002205 ORTHO05D004847 2.0e-34 150.2 183 47.5
FAN11G0257 Fragaria x ananassa HOM05D002205 ORTHO05D004847 7.5e-34 148.3 183 46.4
Glyma.05G143300 Glycine max HOM05D002205 ORTHO05D004847 7.5e-34 148.3 183 47.5
GSVIVG01021548001 Vitis vinifera HOM05D002205 ORTHO05D004847 7.5e-34 148.3 186 46.8
PGR083G2813 Punica granatum HOM05D002205 ORTHO05D004847 9.8e-34 147.9 183 47.0
arahy.Tifrunner.gnm1.ann1.4B2CWV Arachis hypogaea HOM05D002205 ORTHO05D004847 1.3e-33 147.5 183 46.4
arahy.Tifrunner.gnm1.ann1.WT34VK Arachis hypogaea HOM05D002205 ORTHO05D004847 1.3e-33 147.5 183 46.4
Lj1C1169G11 Lonicera japonica HOM05D002205 ORTHO05D004847 1.3e-33 147.5 202 44.6
Ciclev10015916m.g Citrus clementina HOM05D002205 ORTHO05D004847 1.7e-33 147.1 183 47.5
Phvul.006G168145 Phaseolus vulgaris HOM05D002205 ORTHO05D004847 2.2e-33 146.7 183 47.0
Dinv21519 Davidia involucrata HOM05D002205 ORTHO05D004847 2.9e-33 146.4 183 46.4
CDE05G1148 Ceratophyllum demersum HOM05D002205 ORTHO05D004847 3.7e-33 146.0 183 47.5
Ca_00510_v3 Cicer arietinum L. HOM05D002205 ORTHO05D004847 3.7e-33 146.0 193 45.1
COL.COLO4_31010 Corchorus olitorius HOM05D002205 ORTHO05D004847 3.7e-33 146.0 193 46.6
Lj4g0000856 Lotus japonicus HOM05D002205 ORTHO05D004847 3.7e-33 146.0 183 46.4
ATR1098G096 Amborella trichopoda HOM05D002205 ORTHO05D004847 6.4e-33 145.2 183 45.4
TPR.G26265 Trifolium pratense HOM05D002205 ORTHO05D004847 6.4e-33 145.2 183 45.4
Aqoxy1G01658 Aquilegia oxysepala HOM05D002205 ORTHO05D004847 8.3e-33 144.8 186 46.2
CiPaw.09G119700 Carya illinoinensis HOM05D002205 ORTHO05D004847 8.3e-33 144.8 183 46.4
Lalb_Chr15g0086621 Lupinus albus HOM05D002205 ORTHO05D004847 8.3e-33 144.8 183 45.9
MBI18_g11219_MAGBIO Magnolia biondii HOM05D002205 ORTHO05D004847 8.3e-33 144.8 184 44.6
Ah.14g086280 Amaranthus hybridus HOM05D002205 ORTHO05D004847 1.1e-32 144.4 180 47.2
A07p39660 Brassica napus HOM05D002205 ORTHO05D018573 1.1e-32 144.4 74 91.9
A10p19760 Brassica napus HOM05D002205 ORTHO05D018573 1.1e-32 144.4 74 91.9
Cpa.g.sc17.50 Carica papaya HOM05D002205 ORTHO05D004847 1.1e-32 144.4 183 45.9
SGA_v2.0_scaffold120G32940 Striga asiatica HOM05D002205 ORTHO05D004847 1.1e-32 144.4 183 47.5
VMungo0540G1690 Vigna mungo HOM05D002205 ORTHO05D004847 1.1e-32 144.4 183 47.0
Medtr2g018660 Medicago truncatula HOM05D002205 ORTHO05D004847 1.8e-32 143.7 193 44.0
TWI73G0911 Tripterygium wilfordii HOM05D002205 ORTHO05D004847 1.8e-32 143.7 183 45.9
FAN16G1117 Fragaria x ananassa HOM05D002205 ORTHO05D004847 2.4e-32 143.3 201 43.3
Nn3g20332 Nelumbo nucifera HOM05D002205 ORTHO05D004847 2.4e-32 143.3 183 44.8
Lj6g0014068 Lotus japonicus HOM05D002205 ORTHO05D004847 3.2e-32 142.9 183 45.9
Manes.17G074200 Manihot esculenta HOM05D002205 ORTHO05D004847 3.2e-32 142.9 183 47.0
arahy.Tifrunner.gnm1.ann1.GW4I6G Arachis hypogaea HOM05D002205 ORTHO05D004847 4.1e-32 142.5 182 42.9
EL10Ac8g19627 Beta vulgaris HOM05D002205 ORTHO05D004847 4.1e-32 142.5 183 47.0
Glyma.15G090400 Glycine max HOM05D002205 ORTHO05D004847 4.1e-32 142.5 183 44.8
TWI09G0418 Tripterygium wilfordii HOM05D002205 ORTHO05D004847 4.1e-32 142.5 183 45.4
Glyma.13G221800 Glycine max HOM05D002205 ORTHO05D004847 5.4e-32 142.1 183 45.4
Phvul.002G178000 Phaseolus vulgaris HOM05D002205 ORTHO05D004847 5.4e-32 142.1 155 49.7
TAR627G0288 Trochodendron aralioides HOM05D002205 ORTHO05D004847 5.4e-32 142.1 183 47.5
Sc05g0005980 Simmondsia chinensis HOM05D002205 ORTHO05D004847 7.0e-32 141.7 183 45.9
CSS0050225 Camellia sinensis var. sinensis HOM05D002205 ORTHO05D004847 9.2e-32 141.4 171 47.4
Oeu015213.1 Olea europaea HOM05D002205 ORTHO05D004847 9.2e-32 141.4 183 45.9
CANSAT35G0337 Cannabis sativa HOM05D002205 ORTHO05D004847 1.2e-31 141.0 183 47.5
AUR62030135 Chenopodium quinoa HOM05D002205 ORTHO05D004847 1.2e-31 141.0 183 44.8
Psat1g192120 Pisum sativum HOM05D002205 ORTHO05D004847 1.2e-31 141.0 193 44.6
Sed0018506 Sechium edule HOM05D002205 ORTHO05D004847 1.2e-31 141.0 183 45.4
MSTRG.7513 Avicennia marina HOM05D002205 ORTHO05D004847 1.6e-31 140.6 183 45.9
PSO541G1418 Papaver somniferum HOM05D002205 ORTHO05D004847 1.6e-31 140.6 183 45.9
Gohir.D06G144600 Gossypium hirsutum HOM05D002205 ORTHO05D004847 2.0e-31 140.2 183 46.4
Gorai.010G168300 Gossypium raimondii HOM05D002205 ORTHO05D004847 2.0e-31 140.2 183 46.4
Gohir.A06G196100 Gossypium hirsutum HOM05D002205 ORTHO05D004847 3.5e-31 139.4 183 46.4
MD05G1279500 Malus domestica HOM05D002205 ORTHO05D004847 3.5e-31 139.4 182 44.5
Prupe.4G085600 Prunus persica HOM05D002205 ORTHO05D004847 4.6e-31 139.0 183 45.9
PGSC0003DMG400002293 Solanum tuberosum HOM05D002205 ORTHO05D004847 5.9e-31 138.7 182 46.7
Actinidia13441 Actinidia chinensis HOM05D002205 ORTHO05D004847 7.8e-31 138.3 183 45.9
Gohir.A06G139900 Gossypium hirsutum HOM05D002205 ORTHO05D004847 7.8e-31 138.3 183 45.9
Thecc.06G144400 Theobroma cacao HOM05D002205 ORTHO05D004847 1.0e-30 137.9 183 45.4
CAN.G103.15 Capsicum annuum HOM05D002205 ORTHO05D004847 1.3e-30 137.5 183 45.4
Migut.K01167 Erythranthe guttata HOM05D002205 ORTHO05D004847 1.3e-30 137.5 183 44.8
Gohir.D06G203600 Gossypium hirsutum HOM05D002205 ORTHO05D004847 1.3e-30 137.5 183 45.4
Gorai.010G237500 Gossypium raimondii HOM05D002205 ORTHO05D004847 1.3e-30 137.5 183 45.4
Nitab4.5_0002071g0030 Nicotiana tabacum HOM05D002205 ORTHO05D004847 1.3e-30 137.5 193 44.6
Rhsim13G0117500 Rhododendron simsii HOM05D002205 ORTHO05D004847 1.3e-30 137.5 193 44.0
arahy.Tifrunner.gnm1.ann1.R7LP1S Arachis hypogaea HOM05D002205 ORTHO05D004847 1.7e-30 137.1 194 39.7
Potri.011G081600 Populus trichocarpa HOM05D002205 ORTHO05D004847 2.3e-30 136.7 183 43.7
Peaxi162Scf00045g02427 Petunia axillaris HOM05D002205 ORTHO05D004847 3.0e-30 136.3 183 45.9
Sopen08g008680 Solanum pennellii HOM05D002205 ORTHO05D004847 3.0e-30 136.3 183 45.9
Hund17750 Selenicereus undatus HOM05D002205 ORTHO05D004847 3.9e-30 136.0 183 44.8
Nitab4.5_0000315g0040 Nicotiana tabacum HOM05D002205 ORTHO05D004847 5.0e-30 135.6 193 44.0
MD10G1258200 Malus domestica HOM05D002205 ORTHO05D004847 6.6e-30 135.2 183 42.6
RcHm_v2.0_Chr5g0014931 Rosa chinensis HOM05D002205 ORTHO05D004847 6.6e-30 135.2 183 44.3
Duzib192G0694 Durio zibethinus HOM05D002205 ORTHO05D004847 1.5e-29 134.0 186 45.2
Solyc08g023500.4 Solanum lycopersicum HOM05D002205 ORTHO05D004847 1.5e-29 134.0 183 45.4
Actinidia09937 Actinidia chinensis HOM05D002205 ORTHO05D004847 5.6e-29 132.1 183 44.3
Cfa000899 Carpinus fangiana HOM05D002205 ORTHO05D004847 5.6e-29 132.1 183 43.2
Sabra11G0065700 Salix brachista HOM05D002205 ORTHO05D004847 5.6e-29 132.1 186 42.5
Eucgr.D00270 Eucalyptus grandis HOM05D002205 ORTHO05D004847 7.3e-29 131.7 191 44.5
Lsat_1_v5_gn_4_29840 Lactuca sativa HOM05D002205 ORTHO05D004847 1.2e-28 131.0 183 44.3
Manes.01G173000 Manihot esculenta HOM05D002205 ORTHO05D004847 2.8e-28 129.8 186 41.9
unitig_37.g12087 Utricularia gibba HOM05D002205 ORTHO05D004847 2.8e-28 129.8 183 42.1
CsaV3_1G036870 Cucumis sativus L. HOM05D002205 ORTHO05D004847 6.2e-28 128.6 183 42.1
Duzib235G1243 Durio zibethinus HOM05D002205 ORTHO05D004847 6.2e-28 128.6 190 43.7
QL05p055095 Quercus lobata HOM05D002205 ORTHO05D004847 8.0e-28 128.3 237 37.6
SEGI_24320 Sequoiadendron giganteum HOM05D002205 ORTHO05D004847 1.8e-27 127.1 193 40.4
MELO3C002770.2 Cucumis melo HOM05D002205 ORTHO05D004847 2.3e-27 126.7 183 42.1
ECA234G0538 Erigeron canadensis HOM05D002205 ORTHO05D004847 2.3e-27 126.7 186 43.5
Rhsim13G0117600 Rhododendron simsii HOM05D002205 ORTHO05D004847 3.1e-27 126.3 183 42.6
Cc00_g02010 Coffea canephora HOM05D002205 ORTHO05D004847 4.0e-27 125.9 183 41.0
Dinv32214 Davidia involucrata HOM05D002205 ORTHO05D004847 4.0e-27 125.9 173 44.5
HanXRQChr17g0564031 Helianthus annuus HOM05D002205 ORTHO05D004847 8.9e-27 124.8 183 43.2
Sed0018770 Sechium edule HOM05D002205 ORTHO05D004847 1.2e-26 124.4 212 38.7
BolC2t09647H Brassica oleracea HOM05D003212 ORTHO05D017586 3.4e-26 122.9 141 51.1
THA.LOC104812309 Tarenaya hassleriana HOM05D002205 ORTHO05D004847 3.4e-26 122.9 185 40.5
BcaC01g06666 Brassica carinata HOM05D002205 ORTHO05D004847 1.3e-25 120.9 106 60.4
A09p02870 Brassica napus HOM05D002205 ORTHO05D004847 1.3e-25 120.9 182 42.3
BcaC08g44593 Brassica carinata HOM05D002205 ORTHO05D017586 1.7e-25 120.6 117 58.1
BolC3t15977H Brassica oleracea HOM05D002205 ORTHO05D004847 1.7e-25 120.6 109 58.7
Manes.01G173100 Manihot esculenta HOM05D002205 ORTHO05D004847 1.7e-25 120.6 184 41.3
AT4G03610 Arabidopsis thaliana HOM05D002205 ORTHO05D004847 2.2e-25 120.2 107 57.9
BcaB01g02544 Brassica carinata HOM05D002205 ORTHO05D004847 2.9e-25 119.8 110 59.1
Atru.chr10.1082 Acer truncatum HOM05D002205 ORTHO05D004847 3.7e-25 119.4 103 56.3
BraA09t35932Z Brassica rapa HOM05D002205 ORTHO05D004847 4.9e-25 119.0 107 58.9
Sp6g03600 Schrenkiella parvula HOM05D002205 ORTHO05D004847 4.9e-25 119.0 161 45.3
BraA03t12216Z Brassica rapa HOM05D002205 ORTHO05D004847 6.4e-25 118.6 109 58.7
C03p36630 Brassica napus HOM05D002205 ORTHO05D004847 8.3e-25 118.2 109 57.8
AL6G49170 Arabidopsis lyrata HOM05D002205 ORTHO05D004847 1.1e-24 117.9 107 57.9
BcaC04g23959 Brassica carinata HOM05D002205 ORTHO05D004847 1.1e-24 117.9 107 57.9
BolC9t53222H Brassica oleracea HOM05D002205 ORTHO05D004847 1.1e-24 117.9 107 57.9
C09p02950 Brassica napus HOM05D002205 ORTHO05D004847 1.4e-24 117.5 107 57.9
CARHR252020 Cardamine hirsuta HOM05D002205 ORTHO05D004847 1.4e-24 117.5 107 56.1
HPP92_018655 Vanilla planifolia HOM05D002205 ORTHO05D004847 2.4e-24 116.7 93 61.3
A03p30340 Brassica napus HOM05D002205 ORTHO05D004847 3.2e-24 116.3 109 57.8
BcaB01g01908 Brassica carinata HOM05D002205 ORTHO05D004847 5.4e-24 115.5 107 57.9
Carub.0006s3345 Capsella rubella HOM05D002205 ORTHO05D004847 7.0e-24 115.2 107 57.0
Thhalv10028809m.g Eutrema salsugineum HOM05D002205 ORTHO05D004847 2.0e-23 113.6 107 55.1
AUR62002680 Chenopodium quinoa HOM05D002205 ORTHO05D004847 4.6e-23 112.5 165 41.8
FvH4_3g05040 Fragaria vesca HOM05D002205 ORTHO05D004847 6.0e-23 112.1 133 47.4
C02p36490 Brassica napus HOM05D002205 ORTHO05D017586 3.0e-22 109.8 137 49.6
C06p20640 Brassica napus HOM05D002205 ORTHO05D017586 6.6e-22 108.6 137 49.6
ClCG03G006500 Citrullus lanatus HOM05D002205 ORTHO05D004847 1.1e-21 107.8 237 32.9
VMungo0251G1393 Vigna mungo HOM05D002205 ORTHO05D004847 1.1e-21 107.8 124 48.4
vmacro03432 Vaccinium macrocarpon HOM05D002205 ORTHO05D004847 3.3e-21 106.3 199 36.7
Aa31LG9G8880 Aethionema arabicum HOM05D002205 ORTHO05D004847 1.6e-20 104.0 160 41.9
Os03g0643250 Oryza sativa ssp. japonica HOM05D002205 ORTHO05D004847 1.6e-20 104.0 108 50.0
Pp3c3_9110 Physcomitrium patens HOM05D002205 ORTHO05D004847 8.1e-20 101.7 196 35.7
arahy.Tifrunner.gnm1.ann1.PSQD3A Arachis hypogaea HOM05D002205 ORTHO05D004847 2.3e-19 100.1 92 53.3
BolC6t37247H Brassica oleracea HOM05D003212 ORTHO05D017586 2.3e-19 100.1 196 39.8
SMO118G0510 Selaginella moellendorffii HOM05D002205 ORTHO05D004847 1.5e-18 97.4 126 46.0
Gorai.007G245400 Gossypium raimondii HOM05D002205 ORTHO05D004847 1.7e-17 94.0 157 41.4
Glyma.08G099700 Glycine max HOM05D002205 ORTHO05D004847 3.7e-17 92.8 147 39.5
Mapoly0054s0026 Marchantia polymorpha HOM05D002205 ORTHO05D004847 8.3e-17 91.7 184 34.2
Glyma.08G231600 Glycine max HOM05D002205 ORTHO05D004847 3.2e-16 89.7 147 37.4
AagrBONN_evm.TU.Sc2ySwM_344.1912 Anthoceros agrestis HOM05D002205 ORTHO05D004847 9.2e-16 88.2 207 33.3
DCAR_027888 Daucus carota HOM05D002205 ORTHO05D004847 2.1e-12 77.0 116 43.1
Gohir.D11G230780 Gossypium hirsutum HOM05D002205 ORTHO05D004847 1.8e-11 73.9 113 41.6
Os03g0642900 Oryza sativa ssp. japonica HOM05D002205 ORTHO05D004847 3.1e-11 73.2 53 66.0
Os12g0615500 Oryza sativa ssp. japonica HOM05D002205 ORTHO05D004847 3.1e-11 73.2 113 40.7
C04p36940 Brassica napus HOM05D002205 ORTHO05D101377 6.8e-11 72.0 39 84.6
PRCOL_00004844 Prasinoderma coloniale HOM05D002205 ORTHO05D004847 1.2e-10 71.2 116 36.2
Zm00001eb083760 Zea mays HOM05D002205 ORTHO05D004847 1.2e-10 71.2 53 62.3
BcaB01g04040 Brassica carinata HOM05D003212 ORTHO05D017537 2.0e-10 70.5 85 44.7
BcaB05g24115 Brassica carinata HOM05D003212 ORTHO05D017537 4.4e-10 69.3 85 43.5
Zm00001eb050530 Zea mays HOM05D002205 ORTHO05D004847 5.8e-10 68.9 57 63.2
BraA10t43114Z Brassica rapa HOM05D002205 ORTHO05D017586 7.6e-10 68.6 46 73.9
SHI10514 Sapria himalayana HOM05D002205 ORTHO05D004847 2.1e-07 60.5 40 67.5
BolC8t52206H Brassica oleracea HOM05D003212 ORTHO05D017537 1.0e-06 58.2 53 64.2
Aa31LG1G5360 Aethionema arabicum HOM05D003212 ORTHO05D003959 1.7e-06 57.4 31 80.6
AT3G54470 Arabidopsis thaliana HOM05D003212 ORTHO05D003959 1.7e-06 57.4 31 80.6
BcaB02g07736 Brassica carinata HOM05D003212 ORTHO05D003959 1.7e-06 57.4 31 80.6
BcaC08g44683 Brassica carinata HOM05D003212 ORTHO05D003959 1.7e-06 57.4 31 80.6
C06p22180 Brassica napus HOM05D003212 ORTHO05D003959 1.7e-06 57.4 31 80.6
BolC6t37404H Brassica oleracea HOM05D003212 ORTHO05D003959 1.7e-06 57.4 31 80.6
Carub.0005s2109 Capsella rubella HOM05D003212 ORTHO05D003959 1.7e-06 57.4 31 80.6
CARHR164370 Cardamine hirsuta HOM05D003212 ORTHO05D003959 1.7e-06 57.4 31 80.6
Thhalv10010334m.g Eutrema salsugineum HOM05D003212 ORTHO05D003959 3.9e-06 56.2 32 78.1
AL5G35520 Arabidopsis lyrata HOM05D003212 ORTHO05D003959 5.1e-06 55.8 31 77.4


User provided reference genes

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