Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39601 Brassica carinata HOM05D005113 ORTHO05D006045 1.2e-40 169.5 89 100.0
C08p27550 Brassica napus HOM05D005113 ORTHO05D006045 1.2e-40 169.5 89 100.0
BolC8t50376H Brassica oleracea HOM05D005113 ORTHO05D006045 1.2e-40 169.5 89 100.0
A09p45370 Brassica napus HOM05D005113 ORTHO05D006045 7.2e-38 160.2 89 93.3
BraA09t40001Z Brassica rapa HOM05D005113 ORTHO05D006045 7.2e-38 160.2 89 93.3
BcaB01g00380 Brassica carinata HOM05D005113 ORTHO05D006045 1.2e-37 159.5 89 93.3
BcaB02g08576 Brassica carinata HOM05D005113 ORTHO05D006045 2.8e-34 148.3 89 84.3
BcaC02g09265 Brassica carinata HOM05D005113 ORTHO05D006045 2.8e-34 148.3 89 84.3
A04p07080 Brassica napus HOM05D005113 ORTHO05D006045 2.8e-34 148.3 89 84.3
C04p40660 Brassica napus HOM05D005113 ORTHO05D006045 2.8e-34 148.3 89 84.3
BolC4t25648H Brassica oleracea HOM05D005113 ORTHO05D006045 2.8e-34 148.3 89 84.3
BraA04t16405Z Brassica rapa HOM05D005113 ORTHO05D006045 2.8e-34 148.3 89 84.3
Sp5g09930 Schrenkiella parvula HOM05D005113 ORTHO05D006045 6.3e-34 147.1 89 83.1
Thhalv10010863m.g Eutrema salsugineum HOM05D005113 ORTHO05D006045 1.8e-33 145.6 89 83.1
CARHR162120 Cardamine hirsuta HOM05D005113 ORTHO05D006045 7.7e-32 140.2 91 81.3
AT3G52360 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 2.2e-31 138.7 89 84.3
AL5G33010 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 3.8e-31 137.9 89 83.1
Carub.0005s1871 Capsella rubella HOM05D005113 ORTHO05D006045 5.5e-30 134.0 89 79.8
Aa31LG10G7390 Aethionema arabicum HOM05D005113 ORTHO05D006045 9.4e-30 133.3 88 78.4
BraA09t40003Z Brassica rapa HOM05D005113 ORTHO05D006045 1.4e-28 129.4 89 76.4
THA.LOC104803378 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 3.5e-24 114.8 73 79.5
A09p45390 Brassica napus HOM05D005113 ORTHO05D006045 7.7e-24 113.6 92 68.5
THA.LOC104803375 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 2.0e-19 99.0 83 66.3
TAR623G1290 Trochodendron aralioides HOM05D005113 ORTHO05D006045 7.5e-19 97.1 73 68.5
Ciclev10013205m.g Citrus clementina HOM05D005113 ORTHO05D006045 1.3e-18 96.3 73 72.6
Aqoxy1G00593 Aquilegia oxysepala HOM05D005113 ORTHO05D006045 5.4e-17 90.9 77 63.6
Dinv25078 Davidia involucrata HOM05D005113 ORTHO05D006045 5.4e-17 90.9 77 61.0
GSVIVG01022551001 Vitis vinifera HOM05D005113 ORTHO05D006045 7.0e-17 90.5 72 65.3
Thecc.05G109700 Theobroma cacao HOM05D005113 ORTHO05D006045 1.2e-16 89.7 76 61.8
AL4G31960 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 2.7e-16 88.6 71 66.2
Duzib106G0847 Durio zibethinus HOM05D005113 ORTHO05D006045 2.7e-16 88.6 68 61.8
TAR369G1050 Trochodendron aralioides HOM05D005113 ORTHO05D006045 4.5e-16 87.8 77 62.3
Duzib093G2033 Durio zibethinus HOM05D005113 ORTHO05D006045 5.9e-16 87.4 70 61.4
CARHR130110 Cardamine hirsuta HOM05D005113 ORTHO05D006045 7.7e-16 87.0 74 63.5
Sabra16G0067600 Salix brachista HOM05D005113 ORTHO05D006045 1.0e-15 86.7 72 65.3
Potri.006G200000 Populus trichocarpa HOM05D005113 ORTHO05D006045 1.3e-15 86.3 79 58.2
Nn2g14410 Nelumbo nucifera HOM05D005113 ORTHO05D006045 2.3e-15 85.5 84 58.3
PSO339G6075 Papaver somniferum HOM05D005113 ORTHO05D006045 2.3e-15 85.5 76 61.8
TWI53G1462 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 2.3e-15 85.5 72 62.5
CSS0024187 Camellia sinensis var. sinensis HOM05D005113 ORTHO05D006045 2.9e-15 85.1 74 62.2
Carub.0004s1761 Capsella rubella HOM05D005113 ORTHO05D006045 2.9e-15 85.1 70 62.9
PSO384G2214 Papaver somniferum HOM05D005113 ORTHO05D006045 2.9e-15 85.1 76 61.8
Cpa.g.sc222.18 Carica papaya HOM05D005113 ORTHO05D006045 3.8e-15 84.7 80 53.8
CiPaw.10G020600 Carya illinoinensis HOM05D005113 ORTHO05D006045 3.8e-15 84.7 76 63.2
AT2G35850 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 5.0e-15 84.3 81 58.0
Nn1g06541 Nelumbo nucifera HOM05D005113 ORTHO05D006045 5.0e-15 84.3 82 58.5
Potri.016G066200 Populus trichocarpa HOM05D005113 ORTHO05D006045 5.0e-15 84.3 70 62.9
Gohir.A11G315200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 6.6e-15 84.0 72 61.1
Gorai.007G363100 Gossypium raimondii HOM05D005113 ORTHO05D006045 6.6e-15 84.0 72 63.9
TWI77G0719 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 1.1e-14 83.2 72 59.7
Actinidia07952 Actinidia chinensis HOM05D005113 ORTHO05D006045 1.5e-14 82.8 73 61.6
Gohir.D11G332200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 1.5e-14 82.8 72 62.5
TWI74G1336 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 1.9e-14 82.4 72 61.1
BraA04t18232Z Brassica rapa HOM05D005113 ORTHO05D006045 2.5e-14 82.0 76 59.2
MBI05_g03323_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 2.5e-14 82.0 71 62.0
Manes.08G036800 Manihot esculenta HOM05D005113 ORTHO05D006045 2.5e-14 82.0 71 56.3
HPP92_013935 Vanilla planifolia HOM05D005113 ORTHO05D006045 2.5e-14 82.0 78 61.5
A04p27340 Brassica napus HOM05D005113 ORTHO05D006045 3.3e-14 81.6 76 59.2
BcaB06g28884 Brassica carinata HOM05D005113 ORTHO05D006045 4.2e-14 81.3 77 58.4
Dinv11892 Davidia involucrata HOM05D005113 ORTHO05D006045 4.2e-14 81.3 79 59.5
TAR633G2365 Trochodendron aralioides HOM05D005113 ORTHO05D006045 4.2e-14 81.3 73 61.6
Actinidia06192 Actinidia chinensis HOM05D005113 ORTHO05D006045 5.5e-14 80.9 80 56.2
BolC4t27961H Brassica oleracea HOM05D005113 ORTHO05D006045 7.2e-14 80.5 82 56.1
Oeu020160.1 Olea europaea HOM05D005113 ORTHO05D006045 7.2e-14 80.5 92 54.3
C04p64840 Brassica napus HOM05D005113 ORTHO05D006045 9.5e-14 80.1 85 55.3
BcaB01g03875 Brassica carinata HOM05D005113 ORTHO05D006045 1.2e-13 79.7 86 53.5
BcaC02g07662 Brassica carinata HOM05D005113 ORTHO05D006045 1.6e-13 79.3 82 54.9
Sabra06G0153800 Salix brachista HOM05D005113 ORTHO05D006045 1.6e-13 79.3 68 61.8
Atru.chr8.1293 Acer truncatum HOM05D005113 ORTHO05D006045 2.8e-13 78.6 78 57.7
MBI11_g26202_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 2.8e-13 78.6 75 54.7
MBI11_g46321_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 2.8e-13 78.6 75 54.7
MD14G1044100 Malus domestica HOM05D005113 ORTHO05D006045 2.8e-13 78.6 87 56.3
HPP92_012153 Vanilla planifolia HOM05D005113 ORTHO05D006045 6.1e-13 77.4 78 61.5
QL07p026499 Quercus lobata HOM05D005113 ORTHO05D006045 1.0e-12 76.6 85 52.9
Gohir.D04G093000 Gossypium hirsutum HOM05D005113 ORTHO05D006045 1.4e-12 76.3 86 45.3
CiPaw.09G023700 Carya illinoinensis HOM05D005113 ORTHO05D006045 5.2e-12 74.3 95 48.4
MD12G1045200 Malus domestica HOM05D005113 ORTHO05D006045 5.2e-12 74.3 88 52.3
Haze_20118 Corylus avellana HOM05D005113 ORTHO05D006045 6.8e-12 73.9 84 51.2
CANSAT64G1258 Cannabis sativa HOM05D005113 ORTHO05D006045 1.5e-11 72.8 88 48.9
A03p19780 Brassica napus HOM05D005113 ORTHO05D006045 2.6e-11 72.0 74 54.1
C03p23070 Brassica napus HOM05D005113 ORTHO05D006045 2.6e-11 72.0 74 54.1
BraA03t11230Z Brassica rapa HOM05D005113 ORTHO05D006045 2.6e-11 72.0 74 54.1
PSO384G1750 Papaver somniferum HOM05D005113 ORTHO05D006045 2.6e-11 72.0 103 42.7
Prupe.7G090200 Prunus persica HOM05D005113 ORTHO05D006045 3.4e-11 71.6 78 53.8
BcaC01g05698 Brassica carinata HOM05D005113 ORTHO05D006045 7.5e-11 70.5 74 52.7
BolC3t14709H Brassica oleracea HOM05D005113 ORTHO05D006045 7.5e-11 70.5 74 52.7
Haze_07788 Corylus avellana HOM05D005113 ORTHO05D006045 7.5e-11 70.5 83 49.4
FvH4_6g20940 Fragaria vesca HOM05D005113 ORTHO05D006045 1.3e-10 69.7 87 49.4
FAN05G0955 Fragaria x ananassa HOM05D005113 ORTHO05D006045 1.3e-10 69.7 93 48.4
FAN05G3212 Fragaria x ananassa HOM05D005113 ORTHO05D006045 1.3e-10 69.7 93 48.4
FAN09G1514 Fragaria x ananassa HOM05D005113 ORTHO05D006045 1.3e-10 69.7 93 48.4
FAN14G1795 Fragaria x ananassa HOM05D005113 ORTHO05D006045 1.3e-10 69.7 87 49.4
RcHm_v2.0_Chr3g0477281 Rosa chinensis HOM05D005113 ORTHO05D006045 1.3e-10 69.7 93 48.4
FAN02G2823 Fragaria x ananassa HOM05D005113 ORTHO05D006045 1.7e-10 69.3 94 47.9
MSTRG.26588 Avicennia marina HOM05D005113 ORTHO05D006045 2.2e-10 68.9 77 55.8
Gohir.D09G128500 Gossypium hirsutum HOM05D005113 ORTHO05D006045 3.7e-10 68.2 69 56.5
Eucgr.A02548 Eucalyptus grandis HOM05D005113 ORTHO05D006045 8.3e-10 67.0 75 50.7
Gorai.006G147100 Gossypium raimondii HOM05D005113 ORTHO05D006045 1.8e-09 65.9 63 58.7
Rhsim04G0135100 Rhododendron simsii HOM05D005113 ORTHO05D006045 1.8e-09 65.9 73 56.2
Cfa019390 Carpinus fangiana HOM05D005113 ORTHO05D006045 3.1e-09 65.1 79 49.4
Oeu045023.1 Olea europaea HOM05D005113 ORTHO05D006045 4.1e-09 64.7 73 53.4
Peaxi162Scf00203g00418 Petunia axillaris HOM05D005113 ORTHO05D006045 5.4e-09 64.3 84 52.4
PSO384G4604 Papaver somniferum HOM05D005113 ORTHO05D006045 9.2e-09 63.5 99 42.4
Cc06_g06930 Coffea canephora HOM05D005113 ORTHO05D006045 1.2e-08 63.2 54 64.8
COL.COLO4_29500 Corchorus olitorius HOM05D005113 ORTHO05D006045 1.2e-08 63.2 77 46.8
Migut.L01845 Erythranthe guttata HOM05D005113 ORTHO05D006045 1.6e-08 62.8 73 47.9
Sopen10g032200 Solanum pennellii HOM05D005113 ORTHO05D006045 2.0e-08 62.4 69 55.1
PGR004G1479 Punica granatum HOM05D005113 ORTHO05D006045 2.7e-08 62.0 83 48.2
Solyc10g081690.1 Solanum lycopersicum HOM05D005113 ORTHO05D006045 2.7e-08 62.0 69 55.1
Medtr7g106840 Medicago truncatula HOM05D005113 ORTHO05D006045 4.5e-08 61.2 91 45.1
PGSC0003DMG400028226 Solanum tuberosum HOM05D009103 ORTHO05D010883 7.8e-08 60.5 69 53.6
arahy.Tifrunner.gnm1.ann1.TS08QV Arachis hypogaea HOM05D005113 ORTHO05D006045 1.3e-07 59.7 86 44.2
Thhalv10017703m.g Eutrema salsugineum HOM05D005113 ORTHO05D006045 1.7e-07 59.3 37 75.7
TPR.G34441 Trifolium pratense HOM05D005113 ORTHO05D006045 1.7e-07 59.3 83 48.2
Glyma.10G086500 Glycine max HOM05D005113 ORTHO05D006045 2.3e-07 58.9 63 55.6
Lsat_1_v5_gn_2_101981 Lactuca sativa HOM05D005113 ORTHO05D006045 3.9e-07 58.2 50 60.0
Sp4g18110 Schrenkiella parvula HOM05D005113 ORTHO05D006045 5.0e-07 57.8 39 71.8
Migut.J00732 Erythranthe guttata HOM05D005113 ORTHO05D006045 6.6e-07 57.4 66 54.5
HanXRQChr07g0196541 Helianthus annuus HOM05D005113 ORTHO05D006045 6.6e-07 57.4 89 41.6
Nitab4.5_0000721g0120 Nicotiana tabacum HOM05D005113 ORTHO05D006045 6.6e-07 57.4 79 54.4
arahy.Tifrunner.gnm1.ann1.HSX17H Arachis hypogaea HOM05D005113 ORTHO05D006045 1.1e-06 56.6 57 52.6
Manes.09G042200 Manihot esculenta HOM05D005113 ORTHO05D006045 1.9e-06 55.8 70 47.1
ECA238G1367 Erigeron canadensis HOM05D005113 ORTHO05D006045 2.5e-06 55.5 55 54.5
Oeu044708.1 Olea europaea HOM05D005113 ORTHO05D006045 2.5e-06 55.5 74 51.4
Phvul.007G265600 Phaseolus vulgaris HOM05D005113 ORTHO05D006045 2.5e-06 55.5 63 52.4
AUR62036329 Chenopodium quinoa HOM05D005113 ORTHO05D006045 3.3e-06 55.1 57 52.6
PGSC0003DMG400021340 Solanum tuberosum HOM05D005113 ORTHO05D006045 3.3e-06 55.1 60 55.0
Psat3g027480 Pisum sativum HOM05D005113 ORTHO05D006045 4.3e-06 54.7 93 46.2
Sopen01g002760 Solanum pennellii HOM05D005113 ORTHO05D006045 4.3e-06 54.7 74 44.6
VMungo0720G0986 Vigna mungo HOM05D005113 ORTHO05D006045 4.3e-06 54.7 72 50.0
arahy.Tifrunner.gnm1.ann1.7K7EQP Arachis hypogaea HOM05D005113 ORTHO05D006045 7.3e-06 53.9 73 47.9
DCAR_020680 Daucus carota HOM05D005113 ORTHO05D006045 9.5e-06 53.5 55 54.5


User provided reference genes

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