Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39593 Brassica carinata HOM05D007333 ORTHO05D008874 4.1e-72 274.6 138 100.0
C08p27470 Brassica napus HOM05D007333 ORTHO05D008874 1.7e-70 269.2 138 97.1
BolC8t50364H Brassica oleracea HOM05D007333 ORTHO05D008874 6.7e-67 257.3 135 94.1
BraA09t39992Z Brassica rapa HOM05D007333 ORTHO05D008874 2.1e-60 235.7 139 87.8
A09p45290 Brassica napus HOM05D007333 ORTHO05D008874 4.7e-60 234.6 140 88.6
Sp5g10030 Schrenkiella parvula HOM05D007333 ORTHO05D008874 2.0e-42 176.0 131 68.7
Carub.0005s1859 Capsella rubella HOM05D007333 ORTHO05D008874 1.5e-37 159.8 137 64.2
AT3G52230 Arabidopsis thaliana HOM05D007333 ORTHO05D008874 1.6e-36 156.4 125 67.2
AL5G32820 Arabidopsis lyrata HOM05D007333 ORTHO05D008874 2.3e-35 152.5 130 62.3
CARHR162000 Cardamine hirsuta HOM05D007333 ORTHO05D008874 9.8e-34 147.1 121 66.9
Thhalv10010807m.g Eutrema salsugineum HOM05D007333 ORTHO05D008874 1.0e-30 137.1 117 68.4
Aa31LG10G7320 Aethionema arabicum HOM05D007333 ORTHO05D008874 1.5e-26 123.2 118 55.9
A04p07130 Brassica napus HOM05D007333 ORTHO05D008874 3.3e-21 105.5 67 74.6
THA.LOC104823559 Tarenaya hassleriana HOM05D007333 ORTHO05D008874 5.6e-21 104.8 139 47.5
Cpa.g.sc128.62 Carica papaya HOM05D007333 ORTHO05D008874 1.5e-18 96.7 118 49.2
PGR044G2090 Punica granatum HOM05D007333 ORTHO05D008874 1.4e-16 90.1 137 42.3
BcaC02g09270 Brassica carinata HOM05D007333 ORTHO05D008874 6.0e-15 84.7 81 60.5
Ciclev10032982m.g Citrus clementina HOM05D007333 ORTHO05D008874 1.7e-14 83.2 126 42.9
Eucgr.J01027 Eucalyptus grandis HOM05D007333 ORTHO05D008874 3.0e-14 82.4 73 54.8
C04p40720 Brassica napus HOM05D012099 ORTHO05D008874 3.9e-14 82.0 79 60.8
Gohir.D05G290801 Gossypium hirsutum HOM05D007333 ORTHO05D008874 1.5e-13 80.1 138 39.1
Gorai.009G305900 Gossypium raimondii HOM05D007333 ORTHO05D008874 1.5e-13 80.1 138 39.1
Manes.07G092300 Manihot esculenta HOM05D007333 ORTHO05D008874 3.3e-13 79.0 123 39.8
Thecc.10G097500 Theobroma cacao HOM05D007333 ORTHO05D008874 5.6e-13 78.2 118 40.7
Lj5g0012880 Lotus japonicus HOM05D007333 ORTHO05D008874 9.5e-13 77.4 141 39.0
Potri.010G233400 Populus trichocarpa HOM05D007333 ORTHO05D008874 2.1e-12 76.3 126 38.9
Atru.chr12.950 Acer truncatum HOM05D007333 ORTHO05D008874 3.6e-12 75.5 130 40.0
Gohir.A05G289401 Gossypium hirsutum HOM05D007333 ORTHO05D008874 4.7e-12 75.1 138 38.4
Manes.10G054600 Manihot esculenta HOM05D007333 ORTHO05D008874 4.7e-12 75.1 137 39.4
Oeu015044.1 Olea europaea HOM05D007333 ORTHO05D008874 1.1e-11 73.9 148 37.2
COL.COLO4_34172 Corchorus olitorius HOM05D007333 ORTHO05D008874 1.4e-11 73.6 106 40.6
DCAR_019045 Daucus carota HOM05D007333 ORTHO05D008874 6.8e-11 71.2 113 42.5
Oeu030485.1 Olea europaea HOM05D007333 ORTHO05D008874 1.2e-10 70.5 138 35.5
SalBow6G6510 Salvia bowleyana HOM05D007333 ORTHO05D008874 1.2e-10 70.5 125 38.4
Dinv20855 Davidia involucrata HOM05D007333 ORTHO05D008874 2.0e-10 69.7 147 36.7
TWI63G0473 Tripterygium wilfordii HOM05D007333 ORTHO05D008874 2.0e-10 69.7 119 37.8
ClCG08G008020 Citrullus lanatus HOM05D007333 ORTHO05D008874 2.6e-10 69.3 134 35.8
Duzib114G0443 Durio zibethinus HOM05D007333 ORTHO05D008874 2.6e-10 69.3 135 37.0
Prupe.2G091100 Prunus persica HOM05D007333 ORTHO05D008874 2.6e-10 69.3 126 38.1
Ah.06g184540 Amaranthus hybridus HOM05D007333 ORTHO05D008874 5.8e-10 68.2 118 36.4
CiPaw.14G027900 Carya illinoinensis HOM05D007333 ORTHO05D008874 5.8e-10 68.2 136 38.2
Dinv31280 Davidia involucrata HOM05D007333 ORTHO05D008874 5.8e-10 68.2 147 40.8
Duzib128G0626 Durio zibethinus HOM05D007333 ORTHO05D008874 5.8e-10 68.2 62 53.2
HanXRQChr14g0456271 Helianthus annuus HOM05D007333 ORTHO05D008874 5.8e-10 68.2 57 52.6
Cc02_g10320 Coffea canephora HOM05D007333 ORTHO05D008874 7.5e-10 67.8 130 36.2
CsaV3_2G032900 Cucumis sativus L. HOM05D007333 ORTHO05D008874 7.5e-10 67.8 107 38.3
Sabra10G0181000 Salix brachista HOM05D007333 ORTHO05D008874 7.5e-10 67.8 154 33.1
CANSAT56G1926 Cannabis sativa HOM05D007333 ORTHO05D008874 9.8e-10 67.4 104 39.4
VMungo0720G1448 Vigna mungo HOM05D007333 ORTHO05D008874 9.8e-10 67.4 144 35.4
arahy.Tifrunner.gnm1.ann1.N9I1MN Arachis hypogaea HOM05D007333 ORTHO05D008874 1.3e-09 67.0 122 36.9
MELO3C019874.2 Cucumis melo HOM05D007333 ORTHO05D008874 1.7e-09 66.6 107 37.4
PGSC0003DMG402027350 Solanum tuberosum HOM05D007333 ORTHO05D008874 1.7e-09 66.6 130 35.4
arahy.Tifrunner.gnm1.ann1.YB4FNL Arachis hypogaea HOM05D007333 ORTHO05D008874 2.9e-09 65.9 122 35.2
Sed0000251 Sechium edule HOM05D007333 ORTHO05D008874 2.9e-09 65.9 81 46.9
FAN01G0324 Fragaria x ananassa HOM05D007333 ORTHO05D008874 4.9e-09 65.1 111 35.1
GSVIVG01034686001 Vitis vinifera HOM05D007333 ORTHO05D008874 4.9e-09 65.1 118 41.5
MSTRG.408 Avicennia marina HOM05D007333 ORTHO05D008874 6.4e-09 64.7 144 33.3
Hma1.2p1_0567F.1_g180010 Hydrangea macrophylla HOM05D007333 ORTHO05D008874 6.4e-09 64.7 69 49.3
RcHm_v2.0_Chr1g0334731 Rosa chinensis HOM05D007333 ORTHO05D008874 6.4e-09 64.7 114 39.5
ECA238G3189 Erigeron canadensis HOM05D007333 ORTHO05D008874 8.3e-09 64.3 81 44.4
Lalb_Chr21g0313181 Lupinus albus HOM05D007333 ORTHO05D008874 8.3e-09 64.3 65 47.7
Solyc11g007680.2 Solanum lycopersicum HOM05D007333 ORTHO05D008874 8.3e-09 64.3 126 35.7
TWI38G1382 Tripterygium wilfordii HOM05D007333 ORTHO05D008874 8.3e-09 64.3 137 38.7
FAN03G1611 Fragaria x ananassa HOM05D007333 ORTHO05D008874 1.1e-08 63.9 131 33.6
FAN06G2923 Fragaria x ananassa HOM05D007333 ORTHO05D008874 1.1e-08 63.9 131 33.6
HanXRQChr08g0218141 Helianthus annuus HOM05D007333 ORTHO05D008874 1.1e-08 63.9 116 35.3
Medtr1g492600 Medicago truncatula HOM05D007333 ORTHO05D008874 1.1e-08 63.9 60 50.0
FAN10G2394 Fragaria x ananassa HOM05D007333 ORTHO05D008874 1.9e-08 63.2 131 33.6
MBI17_g20230_MAGBIO Magnolia biondii HOM05D007333 ORTHO05D008874 1.9e-08 63.2 80 45.0
TAR633G0429 Trochodendron aralioides HOM05D007333 ORTHO05D008874 1.9e-08 63.2 59 50.8
Sopen11g003540 Solanum pennellii HOM05D007333 ORTHO05D008874 2.4e-08 62.8 143 35.0
Migut.F01662 Erythranthe guttata HOM05D007333 ORTHO05D008874 3.2e-08 62.4 140 37.9
Nitab4.5_0000593g0040 Nicotiana tabacum HOM05D007333 ORTHO05D008874 3.2e-08 62.4 124 36.3
Ca_10485_v3 Cicer arietinum L. HOM05D007333 ORTHO05D008874 4.1e-08 62.0 135 34.8
Nitab4.5_0003408g0030 Nicotiana tabacum HOM05D007333 ORTHO05D008874 4.1e-08 62.0 112 39.3
Aqoxy2G01500 Aquilegia oxysepala HOM05D007333 ORTHO05D008874 7.1e-08 61.2 76 42.1
Medtr1g492630 Medicago truncatula HOM05D007333 ORTHO05D008874 7.1e-08 61.2 53 47.2
SEGI_06473 Sequoiadendron giganteum HOM05D007333 ORTHO05D008874 9.2e-08 60.8 69 44.9
PSO339G5821 Papaver somniferum HOM05D007333 ORTHO05D008874 2.1e-07 59.7 83 41.0
Peaxi162Scf00398g00057 Petunia axillaris HOM05D007333 ORTHO05D008874 2.7e-07 59.3 130 30.8
unitig_746.g26629 Utricularia gibba HOM05D007333 ORTHO05D008874 3.5e-07 58.9 146 33.6
Lsat_1_v5_gn_2_102881 Lactuca sativa HOM05D007333 ORTHO05D008874 4.6e-07 58.5 79 45.6
Lsat_1_v5_gn_8_23060 Lactuca sativa HOM05D007333 ORTHO05D008874 4.6e-07 58.5 120 33.3
Lalb_Chr06g0170141 Lupinus albus HOM05D007333 ORTHO05D008874 1.0e-06 57.4 121 33.1
ECA233G0976 Erigeron canadensis HOM05D007333 ORTHO05D008874 1.3e-06 57.0 63 46.0
HPP92_009761 Vanilla planifolia HOM05D065211 ORTHO05D008874 1.7e-06 56.6 57 52.6
Nn2g13958 Nelumbo nucifera HOM05D007333 ORTHO05D008874 2.3e-06 56.2 50 54.0
SGA_v2.0_scaffold62G21322 Striga asiatica HOM05D007333 ORTHO05D008874 6.6e-06 54.7 136 33.8
Psat6g175280 Pisum sativum HOM05D007333 ORTHO05D008874 8.6e-06 54.3 80 37.5


User provided reference genes

Program Settings