Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39583 Brassica carinata HOM05D005163 ORTHO05D006462 4.7e-120 434.5 210 100.0
C08p26360 Brassica napus HOM05D005163 ORTHO05D006462 5.5e-105 384.4 185 100.0
C07p46120 Brassica napus HOM05D005163 ORTHO05D006462 1.2e-94 350.1 252 72.6
BolC7t45128H Brassica oleracea HOM05D005163 ORTHO05D006462 1.2e-94 350.1 252 72.6
Thhalv10010167m.g Eutrema salsugineum HOM05D005163 ORTHO05D006462 1.4e-92 343.2 252 71.4
Sp5g11160 Schrenkiella parvula HOM05D005163 ORTHO05D006462 9.2e-92 340.5 253 71.1
Aa31LG4G19160 Aethionema arabicum HOM05D005163 ORTHO05D006462 1.2e-91 340.1 247 71.3
CARHR160630 Cardamine hirsuta HOM05D005163 ORTHO05D006462 1.0e-90 337.0 247 70.4
Carub.0005s1745 Capsella rubella HOM05D005163 ORTHO05D006462 2.3e-90 335.9 247 70.0
A03p48100 Brassica napus HOM05D005163 ORTHO05D006462 6.6e-90 334.3 277 66.1
AL5G31470 Arabidopsis lyrata HOM05D005163 ORTHO05D006462 3.3e-89 332.0 249 69.1
AT3G51050 Arabidopsis thaliana HOM05D005163 ORTHO05D006462 6.1e-88 327.8 249 68.3
THA.LOC104826639 Tarenaya hassleriana HOM05D005163 ORTHO05D006462 3.5e-83 312.0 247 65.6
Manes.02G100000 Manihot esculenta HOM05D005163 ORTHO05D006462 1.6e-80 303.1 247 62.8
Ciclev10025040m.g Citrus clementina HOM05D005163 ORTHO05D006462 3.6e-80 302.0 247 62.3
Haze_03825 Corylus avellana HOM05D005163 ORTHO05D006462 8.0e-80 300.8 247 63.6
GSVIVG01018847001 Vitis vinifera HOM05D005163 ORTHO05D006462 1.1e-79 300.4 247 61.5
TWI73G0422 Tripterygium wilfordii HOM05D005163 ORTHO05D006462 1.4e-79 300.1 247 62.8
Cfa006924 Carpinus fangiana HOM05D005163 ORTHO05D006462 3.1e-79 298.9 247 63.2
MD15G1250800 Malus domestica HOM05D005163 ORTHO05D006462 2.6e-78 295.8 247 62.8
QL06p034609 Quercus lobata HOM05D005163 ORTHO05D006462 2.6e-78 295.8 247 61.9
Thecc.01G025400 Theobroma cacao HOM05D005163 ORTHO05D006462 5.8e-78 294.7 247 60.3
Lj4C212G4 Lonicera japonica HOM05D005163 ORTHO05D006462 7.5e-78 294.3 247 61.9
Rhsim08G0123900 Rhododendron simsii HOM05D005163 ORTHO05D006462 7.5e-78 294.3 247 61.1
HanXRQChr07g0191281 Helianthus annuus HOM05D005163 ORTHO05D006462 9.8e-78 293.9 249 61.0
Nitab4.5_0000723g0040 Nicotiana tabacum HOM05D005163 ORTHO05D006462 1.7e-77 293.1 247 61.1
Nitab4.5_0007070g0020 Nicotiana tabacum HOM05D005163 ORTHO05D006462 2.2e-77 292.7 247 60.7
Prupe.7G163500 Prunus persica HOM05D005163 ORTHO05D006462 2.2e-77 292.7 247 61.5
MD02G1137100 Malus domestica HOM05D005163 ORTHO05D006462 2.9e-77 292.4 247 61.1
MSTRG.23270 Avicennia marina HOM05D005163 ORTHO05D006462 3.7e-77 292.0 247 61.1
CSS0019296 Camellia sinensis var. sinensis HOM05D005163 ORTHO05D006462 6.4e-77 291.2 247 61.1
arahy.Tifrunner.gnm1.ann1.U51VHD Arachis hypogaea HOM05D005163 ORTHO05D006462 8.3e-77 290.8 247 60.7
CANSAT01G3091 Cannabis sativa HOM05D005163 ORTHO05D006462 8.3e-77 290.8 247 59.9
HanXRQChr14g0441521 Helianthus annuus HOM05D005163 ORTHO05D006462 8.3e-77 290.8 247 60.7
Potri.007G017600 Populus trichocarpa HOM05D005163 ORTHO05D006462 8.3e-77 290.8 247 61.1
Atru.chr3.745 Acer truncatum HOM05D005163 ORTHO05D006462 1.1e-76 290.4 247 61.9
Gohir.A12G062100 Gossypium hirsutum HOM05D005163 ORTHO05D006462 1.1e-76 290.4 247 59.9
RcHm_v2.0_Chr2g0100261 Rosa chinensis HOM05D005163 ORTHO05D006462 1.1e-76 290.4 247 60.7
ClCG01G020030 Citrullus lanatus HOM05D005163 ORTHO05D006462 1.4e-76 290.0 247 60.7
Gorai.008G065200 Gossypium raimondii HOM05D005163 ORTHO05D006462 1.4e-76 290.0 247 59.9
ECA238G0541 Erigeron canadensis HOM05D005163 ORTHO05D006462 1.9e-76 289.7 247 59.5
FvH4_1g12400 Fragaria vesca HOM05D005163 ORTHO05D006462 1.9e-76 289.7 247 59.1
Gohir.D12G062000 Gossypium hirsutum HOM05D005163 ORTHO05D006462 1.9e-76 289.7 247 59.9
Peaxi162Scf00084g01221 Petunia axillaris HOM05D005163 ORTHO05D006462 1.9e-76 289.7 247 60.7
Sabra07G0015000 Salix brachista HOM05D005163 ORTHO05D006462 1.9e-76 289.7 247 60.7
Ca_24882_v3 Cicer arietinum L. HOM05D005163 ORTHO05D006462 2.4e-76 289.3 247 61.5
Duzib187G1632 Durio zibethinus HOM05D005163 ORTHO05D006462 2.4e-76 289.3 247 59.1
SalBow8G4654 Salvia bowleyana HOM05D005163 ORTHO05D006462 2.4e-76 289.3 247 61.1
Sed0007947 Sechium edule HOM05D005163 ORTHO05D006462 3.2e-76 288.9 247 60.7
arahy.Tifrunner.gnm1.ann1.U2HICA Arachis hypogaea HOM05D005163 ORTHO05D006462 4.1e-76 288.5 247 59.9
CDE04G3147 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 4.1e-76 288.5 247 58.7
VMungo1215G3295 Vigna mungo HOM05D005163 ORTHO05D006462 4.1e-76 288.5 247 61.1
Lsat_1_v5_gn_2_78240 Lactuca sativa HOM05D005163 ORTHO05D006462 5.4e-76 288.1 248 58.5
PSO541G1023 Papaver somniferum HOM05D005163 ORTHO05D006462 5.4e-76 288.1 248 59.7
Glyma.01G170600 Glycine max HOM05D005163 ORTHO05D006462 7.1e-76 287.7 247 60.3
MELO3C007876.2 Cucumis melo HOM05D005163 ORTHO05D006462 1.2e-75 287.0 247 60.3
Hma1.2p1_0913F.1_g236050 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 1.2e-75 287.0 247 60.7
Lj2g0010053 Lotus japonicus HOM05D005163 ORTHO05D006462 1.2e-75 287.0 247 60.3
Lalb_Chr05g0212611 Lupinus albus HOM05D005163 ORTHO05D006462 1.2e-75 287.0 247 60.3
PGR102G2820 Punica granatum HOM05D005163 ORTHO05D006462 1.6e-75 286.6 247 61.1
Glyma.11G072700 Glycine max HOM05D005163 ORTHO05D006462 2.1e-75 286.2 247 59.5
Psat2g156920 Pisum sativum HOM05D005163 ORTHO05D006462 2.1e-75 286.2 247 61.1
CsaV3_6G046790 Cucumis sativus L. HOM05D005163 ORTHO05D006462 2.7e-75 285.8 247 60.3
Migut.H02494 Erythranthe guttata HOM05D005163 ORTHO05D006462 3.5e-75 285.4 247 59.1
TPR.G2381 Trifolium pratense HOM05D005163 ORTHO05D006462 3.5e-75 285.4 247 61.1
vmacro17732 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 3.5e-75 285.4 243 61.3
Sopen02g029360 Solanum pennellii HOM05D005163 ORTHO05D006462 4.6e-75 285.0 247 60.3
PGSC0003DMG400003539 Solanum tuberosum HOM05D005163 ORTHO05D006462 4.6e-75 285.0 247 60.3
CAN.G358.18 Capsicum annuum HOM05D005163 ORTHO05D006462 6.0e-75 284.6 247 59.9
Lalb_Chr16g0377681 Lupinus albus HOM05D005163 ORTHO05D006462 7.8e-75 284.3 246 61.0
Eucgr.J02388 Eucalyptus grandis HOM05D005163 ORTHO05D006462 1.0e-74 283.9 247 59.1
Phvul.002G166800 Phaseolus vulgaris HOM05D005163 ORTHO05D006462 1.0e-74 283.9 247 59.5
Ah.02g124830 Amaranthus hybridus HOM05D005163 ORTHO05D006462 1.3e-74 283.5 248 60.1
Solyc02g084690.3 Solanum lycopersicum HOM05D005163 ORTHO05D006462 1.3e-74 283.5 247 59.9
Potri.005G118300 Populus trichocarpa HOM05D005163 ORTHO05D006462 1.7e-74 283.1 248 59.7
Sed0022975 Sechium edule HOM05D005163 ORTHO05D006462 2.3e-74 282.7 247 59.5
Hund16465 Selenicereus undatus HOM05D005163 ORTHO05D006462 2.3e-74 282.7 248 60.1
TAR376G0780 Trochodendron aralioides HOM05D005163 ORTHO05D006462 3.0e-74 282.3 246 59.3
Cc07_g10240 Coffea canephora HOM05D005163 ORTHO05D006462 3.9e-74 282.0 247 58.7
Medtr5g021150 Medicago truncatula HOM05D005163 ORTHO05D006462 5.1e-74 281.6 247 61.1
PSO675G4614 Papaver somniferum HOM05D005163 ORTHO05D006462 5.1e-74 281.6 248 59.7
Os02g0100700 Oryza sativa ssp. japonica HOM05D005163 ORTHO05D006462 1.1e-73 280.4 249 58.6
Aqoxy5G01510 Aquilegia oxysepala HOM05D005163 ORTHO05D006462 2.5e-73 279.3 249 58.6
Actinidia19230 Actinidia chinensis HOM05D005163 ORTHO05D006462 3.3e-73 278.9 240 60.8
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 3.6e-72 275.4 242 58.3
FAN26G0993 Fragaria x ananassa HOM05D005163 ORTHO05D006462 3.6e-72 275.4 242 58.3
Zm00001eb228990 Zea mays HOM05D005163 ORTHO05D006462 3.6e-72 275.4 250 56.8
BcaC06g33060 Brassica carinata HOM05D005163 ORTHO05D006462 8.1e-72 274.2 254 60.2
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 8.1e-72 274.2 242 57.9
FAN28G1722 Fragaria x ananassa HOM05D005163 ORTHO05D006462 8.1e-72 274.2 242 57.9
Oeu024029.1 Olea europaea HOM05D005163 ORTHO05D006462 8.1e-72 274.2 248 57.3
ATR0661G156 Amborella trichopoda HOM05D005163 ORTHO05D006462 1.8e-71 273.1 247 56.3
Nn5g29168 Nelumbo nucifera HOM05D005163 ORTHO05D006462 2.3e-71 272.7 247 57.9
HPP92_021000 Vanilla planifolia HOM05D005163 ORTHO05D006462 3.1e-71 272.3 247 56.3
EL10As8g23870 Beta vulgaris HOM05D005163 ORTHO05D006462 6.8e-71 271.2 243 58.4
AUR62007635 Chenopodium quinoa HOM05D005163 ORTHO05D006462 8.9e-71 270.8 259 57.1
COL.COLO4_21984 Corchorus olitorius HOM05D005163 ORTHO05D006462 8.9e-71 270.8 303 49.8
Gorai.007G198300 Gossypium raimondii HOM05D005163 ORTHO05D006462 5.8e-70 268.1 246 56.1
SGA_v2.0_scaffold280G46851 Striga asiatica HOM05D005163 ORTHO05D006462 5.8e-70 268.1 234 59.8
CiPaw.07G054500 Carya illinoinensis HOM05D005163 ORTHO05D006462 1.3e-69 266.9 237 59.9
Dinv40040 Davidia involucrata HOM05D005163 ORTHO05D006462 1.3e-69 266.9 248 57.3
Gohir.A11G178900 Gossypium hirsutum HOM05D005163 ORTHO05D006462 2.2e-69 266.2 246 55.7
Sc03g0003300 Simmondsia chinensis HOM05D005163 ORTHO05D006462 2.2e-69 266.2 248 58.5
Gohir.D11G186500 Gossypium hirsutum HOM05D005163 ORTHO05D006462 3.0e-66 255.8 242 55.4
Oeu005146.2 Olea europaea HOM05D005163 ORTHO05D006462 1.1e-65 253.8 280 51.4
DCAR_031672 Daucus carota HOM05D005163 ORTHO05D006462 7.8e-59 231.1 219 58.9
AUR62004121 Chenopodium quinoa HOM05D005163 ORTHO05D006462 5.1e-58 228.4 281 48.4
Actinidia26108 Actinidia chinensis HOM05D005163 ORTHO05D006462 7.3e-57 224.6 214 58.9
Mapoly0159s0016 Marchantia polymorpha HOM05D005163 ORTHO05D006462 7.3e-57 224.6 244 49.2
Pp3c2_37540 Physcomitrium patens HOM05D005163 ORTHO05D006462 6.2e-56 221.5 248 47.6
Duzib147G0248 Durio zibethinus HOM05D005163 ORTHO05D006462 1.4e-55 220.3 214 55.6
Pp3c2_36750 Physcomitrium patens HOM05D005163 ORTHO05D006462 5.8e-54 214.9 246 46.7
Pp3c2_36751 Physcomitrium patens HOM05D005163 ORTHO05D006462 5.8e-54 214.9 246 46.7
Pp3c11_13530 Physcomitrium patens HOM05D005163 ORTHO05D006462 2.5e-49 199.5 248 44.8
SMO340G0175 Selaginella moellendorffii HOM05D005163 ORTHO05D006462 7.3e-49 198.0 237 45.6
AagrBONN_evm.TU.Sc2ySwM_368.2341 Anthoceros agrestis HOM05D005163 ORTHO05D006462 3.6e-48 195.7 264 45.5
Cpa.g.sc6.195 Carica papaya HOM05D005163 ORTHO05D006462 9.0e-47 191.0 242 45.9
BraA09t39874Z Brassica rapa HOM05D005163 ORTHO05D006462 9.9e-46 187.6 100 93.0
Sabra05G0097300 Salix brachista HOM05D005163 ORTHO05D006462 3.2e-44 182.6 259 44.8
A09p44140 Brassica napus HOM05D005163 ORTHO05D006462 1.6e-40 170.2 104 82.7
CBR_g41477 Chara braunii HOM05D005163 ORTHO05D006462 6.5e-37 158.3 243 37.0
Dinv33585 Davidia involucrata HOM05D005163 ORTHO05D006462 4.5e-30 135.6 138 51.4
SEGI_18766 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 3.5e-27 125.9 113 54.9
MCO09G435 Micromonas commoda HOM05D005163 ORTHO05D006462 2.6e-22 109.8 258 31.8
Cre07.g336050 Chlamydomonas reinhardtii HOM05D005163 ORTHO05D006462 1.4e-18 97.4 169 35.5
Hma1.2p1_0913F.1_g236060 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 4.5e-14 82.4 102 50.0
PRCOL_00007058 Prasinoderma coloniale HOM05D005163 ORTHO05D006462 2.5e-12 76.6 260 30.0
CDE12G0395 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 1.8e-07 60.5 65 53.8
Dinv33586 Davidia involucrata HOM05D005163 ORTHO05D006462 3.1e-07 59.7 48 58.3


User provided reference genes

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