Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39571 Brassica carinata HOM05D002044 ORTHO05D005000 9.2e-96 353.6 184 100.0
BcaC07g39569 Brassica carinata HOM05D002044 ORTHO05D005000 2.1e-79 299.3 205 81.5
BcaB01g00558 Brassica carinata HOM05D002044 ORTHO05D005000 3.6e-76 288.5 199 80.9
Sp5g11240 Schrenkiella parvula HOM05D002044 ORTHO05D005000 2.1e-71 272.7 225 69.8
Carub.0008s2810 Capsella rubella HOM05D002044 ORTHO05D005000 1.6e-68 263.1 230 64.8
A03p48070 Brassica napus HOM05D000363 ORTHO05D005000 3.6e-68 261.9 225 68.0
AL8G45120 Arabidopsis lyrata HOM05D002044 ORTHO05D005000 4.7e-68 261.5 230 64.3
C07p46090 Brassica napus HOM05D000363 ORTHO05D005000 4.7e-68 261.5 225 67.6
BolC7t45125H Brassica oleracea HOM05D000363 ORTHO05D005000 4.7e-68 261.5 225 67.6
BraA03t13914Z Brassica rapa HOM05D000363 ORTHO05D005000 1.4e-67 260.0 225 67.6
AT5G66410 Arabidopsis thaliana HOM05D002044 ORTHO05D005000 5.2e-67 258.1 230 63.5
C01p29480 Brassica napus HOM05D000363 ORTHO05D005000 8.9e-67 257.3 225 67.6
BcaC09g50060 Brassica carinata HOM05D000363 ORTHO05D005000 4.4e-66 255.0 223 67.7
BcaNung00405 Brassica carinata HOM05D002044 ORTHO05D005000 7.6e-66 254.2 225 66.2
BraA09t39866Z Brassica rapa HOM05D002044 ORTHO05D005000 1.3e-65 253.4 225 66.2
CARHR160540 Cardamine hirsuta HOM05D002044 ORTHO05D005000 2.9e-65 252.3 225 64.9
BcaC07g39566 Brassica carinata HOM05D002044 ORTHO05D005000 6.4e-65 251.1 225 65.8
C08p26220 Brassica napus HOM05D002044 ORTHO05D005000 6.4e-65 251.1 225 65.8
BolC8t50240H Brassica oleracea HOM05D002044 ORTHO05D005000 6.4e-65 251.1 225 65.8
Carub.0005s1736 Capsella rubella HOM05D002044 ORTHO05D005000 8.4e-65 250.8 225 64.4
A09p44080 Brassica napus HOM05D002044 ORTHO05D005000 1.9e-64 249.6 225 65.3
Aa31LG1G14930 Aethionema arabicum HOM05D002044 ORTHO05D005000 3.2e-64 248.8 237 61.2
AT3G50960 Arabidopsis thaliana HOM05D002044 ORTHO05D005000 3.2e-64 248.8 225 63.6
BolC1t02889H Brassica oleracea HOM05D002044 ORTHO05D005000 6.0e-63 244.6 247 61.5
BraA01t02282Z Brassica rapa HOM05D002044 ORTHO05D005000 8.7e-62 240.7 225 64.4
COL.COLO4_22017 Corchorus olitorius HOM05D000394 ORTHO05D000299 5.8e-58 228.0 235 57.0
Gohir.A12G062700 Gossypium hirsutum HOM05D002044 ORTHO05D005888 1.1e-56 223.8 225 58.7
THA.LOC104800774 Tarenaya hassleriana HOM05D002044 ORTHO05D005000 2.4e-56 222.6 230 55.7
Gohir.D12G062550 Gossypium hirsutum HOM05D002044 ORTHO05D005888 3.2e-56 222.2 225 58.2
Gorai.008G065600 Gossypium raimondii HOM05D002044 ORTHO05D005888 3.2e-56 222.2 225 58.2
Ca_22334_v3 Cicer arietinum L. HOM05D002044 ORTHO05D005000 4.2e-56 221.9 224 57.6
Ca_22338_v3 Cicer arietinum L. HOM05D002044 ORTHO05D005000 4.2e-56 221.9 224 57.6
Ca_22453_v3 Cicer arietinum L. HOM05D002044 ORTHO05D005000 2.1e-55 219.5 224 56.7
Duzib264G0515 Durio zibethinus HOM05D002044 ORTHO05D005000 4.6e-55 218.4 225 56.4
Lsat_1_v5_gn_5_168741 Lactuca sativa HOM05D002044 ORTHO05D005000 7.9e-55 217.6 224 56.7
Glyma.14G219400 Glycine max HOM05D002044 ORTHO05D005000 1.0e-54 217.2 228 54.8
Psat4g095920 Pisum sativum HOM05D002044 ORTHO05D005000 1.0e-54 217.2 225 55.6
GSVIVG01023465001 Vitis vinifera HOM05D002044 ORTHO05D005000 1.0e-54 217.2 225 54.7
Prupe.6G150600 Prunus persica HOM05D002044 ORTHO05D005000 1.7e-54 216.5 225 54.2
Lsat_1_v5_gn_9_109101 Lactuca sativa HOM05D002044 ORTHO05D005000 3.0e-54 215.7 224 55.8
PGR119G1800 Punica granatum HOM05D002044 ORTHO05D005000 3.0e-54 215.7 225 55.6
vmacro04739 Vaccinium macrocarpon HOM05D002044 ORTHO05D005000 3.0e-54 215.7 227 55.1
Haze_13703 Corylus avellana HOM05D002044 ORTHO05D005000 5.1e-54 214.9 225 55.1
AL5G31360 Arabidopsis lyrata HOM05D002044 ORTHO05D005000 8.7e-54 214.2 207 60.9
MELO3C010633.2 Cucumis melo HOM05D002044 ORTHO05D005000 8.7e-54 214.2 230 56.5
TPR.G21543 Trifolium pratense HOM05D002044 ORTHO05D005000 1.5e-53 213.4 225 54.7
Nn5g28996 Nelumbo nucifera HOM05D002044 ORTHO05D005000 1.9e-53 213.0 227 53.3
VMungo0251G3718 Vigna mungo HOM05D002044 ORTHO05D005000 1.9e-53 213.0 228 54.4
GSVIVG01018889001 Vitis vinifera HOM05D002044 ORTHO05D005000 1.9e-53 213.0 225 53.8
Manes.01G139600 Manihot esculenta HOM05D002044 ORTHO05D005000 2.5e-53 212.6 225 55.6
Eucgr.I02400 Eucalyptus grandis HOM05D002044 ORTHO05D005000 3.3e-53 212.2 233 55.4
arahy.Tifrunner.gnm1.ann1.5QW7B0 Arachis hypogaea HOM05D002044 ORTHO05D005000 4.3e-53 211.8 228 53.1
CANSAT01G0885 Cannabis sativa HOM05D002044 ORTHO05D005000 4.3e-53 211.8 228 53.9
CANSAT01G1521 Cannabis sativa HOM05D002044 ORTHO05D005000 4.3e-53 211.8 228 53.9
Cfa021838 Carpinus fangiana HOM05D002044 ORTHO05D005000 4.3e-53 211.8 225 54.7
SGA_v2.0_scaffold12G06330 Striga asiatica HOM05D002044 ORTHO05D005000 4.3e-53 211.8 225 55.6
CSS0036707 Camellia sinensis var. sinensis HOM05D002044 ORTHO05D005000 5.6e-53 211.5 225 53.8
MD02G1141000 Malus domestica HOM05D002044 ORTHO05D005000 5.6e-53 211.5 225 54.7
Sed0002815 Sechium edule HOM05D002044 ORTHO05D005000 5.6e-53 211.5 227 55.1
Medtr8g076890 Medicago truncatula HOM05D002044 ORTHO05D005000 7.3e-53 211.1 225 54.2
Phvul.003G256900 Phaseolus vulgaris HOM05D002044 ORTHO05D005000 9.6e-53 210.7 228 53.9
Duzib187G0459 Durio zibethinus HOM05D002044 ORTHO05D005000 1.3e-52 210.3 225 55.6
Hund07197 Selenicereus undatus HOM05D002044 ORTHO05D005000 1.6e-52 209.9 228 55.3
Potri.007G020400 Populus trichocarpa HOM05D002044 ORTHO05D005000 2.8e-52 209.1 225 54.7
CSS0033828 Camellia sinensis var. sinensis HOM05D002044 ORTHO05D005000 3.6e-52 208.8 234 52.6
Lj2g0004786 Lotus japonicus HOM05D002044 ORTHO05D005000 3.6e-52 208.8 224 54.5
Nitab4.5_0000136g0180 Nicotiana tabacum HOM05D002044 ORTHO05D005000 3.6e-52 208.8 225 54.2
Nitab4.5_0005274g0010 Nicotiana tabacum HOM05D002044 ORTHO05D005000 3.6e-52 208.8 225 54.7
QL06p035291 Quercus lobata HOM05D002044 ORTHO05D005000 3.6e-52 208.8 225 54.7
CSS0037031 Camellia sinensis var. sinensis HOM05D002044 ORTHO05D005000 4.8e-52 208.4 234 52.6
FAN26G1165 Fragaria x ananassa HOM05D002044 ORTHO05D005000 4.8e-52 208.4 226 53.1
Os11g0604700 Oryza sativa ssp. japonica HOM05D002044 ORTHO05D005000 4.8e-52 208.4 225 53.8
TWI73G0506 Tripterygium wilfordii HOM05D002044 ORTHO05D005000 4.8e-52 208.4 225 54.7
FAN28G2878 Fragaria x ananassa HOM05D002044 ORTHO05D005000 6.2e-52 208.0 226 53.1
CsaV3_6G034240 Cucumis sativus L. HOM05D002044 ORTHO05D005000 1.4e-51 206.8 230 55.2
MD15G1253500 Malus domestica HOM05D002044 ORTHO05D005000 1.4e-51 206.8 225 52.9
Thecc.01G028600 Theobroma cacao HOM05D002044 ORTHO05D005000 1.4e-51 206.8 225 54.7
FvH4_5g33310 Fragaria vesca HOM05D002044 ORTHO05D005000 1.8e-51 206.5 225 53.3
Lalb_Chr05g0225171 Lupinus albus HOM05D002044 ORTHO05D005000 3.1e-51 205.7 228 52.6
Cc07_g09970 Coffea canephora HOM05D002044 ORTHO05D005000 5.3e-51 204.9 225 53.3
Os05g0255600 Oryza sativa ssp. japonica HOM05D002044 ORTHO05D005000 6.9e-51 204.5 225 53.3
CAN.G1373.27 Capsicum annuum HOM05D002044 ORTHO05D005000 1.5e-50 203.4 223 53.4
FAN23G1746 Fragaria x ananassa HOM05D002044 ORTHO05D005000 1.5e-50 203.4 226 52.2
Sc16g0009770 Simmondsia chinensis HOM05D002044 ORTHO05D005000 2.0e-50 203.0 230 52.2
MSTRG.23256 Avicennia marina HOM05D002044 ORTHO05D005000 2.6e-50 202.6 225 53.8
EL10Ac4g09698 Beta vulgaris HOM05D002044 ORTHO05D005000 2.6e-50 202.6 210 53.8
CDE10G0804 Ceratophyllum demersum HOM05D002044 ORTHO05D005000 3.4e-50 202.2 223 52.0
Atru.chr3.661 Acer truncatum HOM05D002044 ORTHO05D005000 4.5e-50 201.8 212 56.6
Atru.chr3.706 Acer truncatum HOM05D002044 ORTHO05D005000 4.5e-50 201.8 212 56.6
Glyma.02G053300 Glycine max HOM05D002044 ORTHO05D005000 4.5e-50 201.8 228 52.6
Oeu016116.1 Olea europaea HOM05D002044 ORTHO05D005000 4.5e-50 201.8 225 53.8
unitig_52.g17472 Utricularia gibba HOM05D002044 ORTHO05D005000 4.5e-50 201.8 225 52.4
Actinidia38434 Actinidia chinensis HOM05D002044 ORTHO05D005000 5.8e-50 201.4 231 52.4
Gohir.A11G182100 Gossypium hirsutum HOM05D002044 ORTHO05D005000 5.8e-50 201.4 225 53.8
Solyc02g062540.3 Solanum lycopersicum HOM05D002044 ORTHO05D005000 7.6e-50 201.1 221 53.8
TAR625G1168 Trochodendron aralioides HOM05D002044 ORTHO05D005000 7.6e-50 201.1 194 58.2
CiPaw.07G050300 Carya illinoinensis HOM05D002044 ORTHO05D005000 9.9e-50 200.7 194 57.7
CiPaw.07G051300 Carya illinoinensis HOM05D002044 ORTHO05D005000 9.9e-50 200.7 225 52.4
PSO384G3579 Papaver somniferum HOM05D002044 ORTHO05D005000 9.9e-50 200.7 225 52.4
HanXRQChr09g0261201 Helianthus annuus HOM05D002044 ORTHO05D005000 1.3e-49 200.3 224 53.6
Migut.H02517 Erythranthe guttata HOM05D002044 ORTHO05D005000 1.7e-49 199.9 225 52.4
Sopen02g013550 Solanum pennellii HOM05D002044 ORTHO05D005000 2.2e-49 199.5 221 53.4
PSO339G3999 Papaver somniferum HOM05D002044 ORTHO05D005000 2.9e-49 199.1 223 51.1
FvH4_1g12650 Fragaria vesca HOM05D002044 ORTHO05D005000 3.8e-49 198.7 225 52.4
HanXRQChr11g0325541 Helianthus annuus HOM05D002044 ORTHO05D005000 3.8e-49 198.7 224 53.1
ATR0564G141 Amborella trichopoda HOM05D002044 ORTHO05D005000 4.9e-49 198.4 228 50.9
SGA_v2.0_scaffold51G18807 Striga asiatica HOM05D002044 ORTHO05D005000 4.9e-49 198.4 238 50.8
Ciclev10027615m.g Citrus clementina HOM05D002044 ORTHO05D005000 6.4e-49 198.0 224 52.7
TAR381G0355 Trochodendron aralioides HOM05D002044 ORTHO05D005000 6.4e-49 198.0 194 55.7
PGSC0003DMG400015493 Solanum tuberosum HOM05D002044 ORTHO05D005000 1.4e-48 196.8 221 52.0
CDE10G0985 Ceratophyllum demersum HOM05D002044 ORTHO05D005000 2.4e-48 196.1 223 50.2
RcHm_v2.0_Chr2g0100611 Rosa chinensis HOM05D002044 ORTHO05D005000 4.2e-48 195.3 225 51.1
Zm00001eb167250 Zea mays HOM05D002044 ORTHO05D005000 4.2e-48 195.3 198 56.1
SalBow8G4592 Salvia bowleyana HOM05D002044 ORTHO05D005000 5.4e-48 194.9 224 52.2
Sabra07G0017500 Salix brachista HOM05D002044 ORTHO05D005000 7.1e-48 194.5 225 52.0
ECA232G0973 Erigeron canadensis HOM05D002044 ORTHO05D005000 1.6e-47 193.4 194 56.2
Hma1.2p1_1297F.1_g274030 Hydrangea macrophylla HOM05D002044 ORTHO05D005000 1.6e-47 193.4 264 47.3
AUR62018531 Chenopodium quinoa HOM05D002044 ORTHO05D005000 2.1e-47 193.0 227 49.8
FAN19G2717 Fragaria x ananassa HOM05D002044 ORTHO05D005000 4.6e-47 191.8 232 50.9
arahy.Tifrunner.gnm1.ann1.W01EMI Arachis hypogaea HOM05D002044 ORTHO05D005000 7.9e-47 191.0 221 52.0
Haze_05175 Corylus avellana HOM05D002044 ORTHO05D005000 1.3e-46 190.3 215 52.1
Lj2C458T3 Lonicera japonica HOM05D002044 ORTHO05D005000 1.3e-46 190.3 225 51.1
SHI08635 Sapria himalayana HOM05D002044 ORTHO05D005000 2.3e-46 189.5 223 50.2
THA.LOC104821302 Tarenaya hassleriana HOM05D002044 ORTHO05D005000 1.1e-45 187.2 244 48.4
AUR62020887 Chenopodium quinoa HOM05D002044 ORTHO05D005000 1.9e-45 186.4 225 48.9
Cpa.g.sc6.171 Carica papaya HOM05D002044 ORTHO05D005000 1.3e-44 183.7 202 53.0
Thhalv10010762m.g Eutrema salsugineum HOM05D002044 ORTHO05D005000 2.4e-43 179.5 174 60.9
SalBow1G5811 Salvia bowleyana HOM05D002044 ORTHO05D005000 2.2e-41 172.9 243 46.5
Lj4g0007934 Lotus japonicus HOM05D000394 ORTHO05D000299 1.1e-40 170.6 196 51.0
Peaxi162Scf00008g03317 Petunia axillaris HOM05D002044 ORTHO05D005000 2.5e-40 169.5 234 46.2
Manes.02G097501 Manihot esculenta HOM05D002044 ORTHO05D005000 3.2e-40 169.1 225 46.2
SMO164G0166 Selaginella moellendorffii HOM05D002044 ORTHO05D005000 4.2e-40 168.7 210 50.0
ClCG08G005880 Citrullus lanatus HOM05D002044 ORTHO05D005000 3.5e-39 165.6 318 39.9
Ah.12g058700 Amaranthus hybridus HOM05D002044 ORTHO05D005000 3.9e-38 162.2 225 45.8
Dinv42846 Davidia involucrata HOM05D002044 ORTHO05D005000 1.9e-37 159.8 165 55.2
Dinv43254 Davidia involucrata HOM05D002044 ORTHO05D005000 1.9e-37 159.8 165 55.2
DCAR_018301 Daucus carota HOM05D002044 ORTHO05D005000 4.3e-37 158.7 201 49.3
Gorai.007G200900 Gossypium raimondii HOM05D002044 ORTHO05D005000 7.4e-37 157.9 162 56.8
Nitab4.5_0009648g0030 Nicotiana tabacum HOM05D002044 ORTHO05D005000 1.4e-35 153.7 196 48.0
Pp3c17_20760 Physcomitrium patens HOM05D002044 ORTHO05D005000 1.8e-35 153.3 225 40.9
MBI02_g37834_MAGBIO Magnolia biondii HOM05D002044 ORTHO05D005000 2.0e-34 149.8 177 50.8
Mapoly0077s0014 Marchantia polymorpha HOM05D002044 ORTHO05D005000 5.8e-34 148.3 212 42.5
CARHR034760 Cardamine hirsuta HOM05D002044 ORTHO05D005000 2.9e-33 146.0 144 61.1
arahy.Tifrunner.gnm1.ann1.544LAE Arachis hypogaea HOM05D002044 ORTHO05D005000 4.2e-32 142.1 199 45.7
Gohir.D11G188800 Gossypium hirsutum HOM05D002044 ORTHO05D005000 5.5e-32 141.7 88 83.0
ClCG01G019890 Citrullus lanatus HOM05D002044 ORTHO05D005000 1.6e-31 140.2 88 83.0
FAN18G2776 Fragaria x ananassa HOM05D002044 ORTHO05D005000 2.1e-31 139.8 171 48.5
FAN08G2684 Fragaria x ananassa HOM05D002044 ORTHO05D005000 7.9e-31 137.9 174 47.7
A01p23720 Brassica napus HOM05D002044 ORTHO05D005000 5.7e-29 131.7 85 81.2
BcaC06g33064 Brassica carinata HOM05D000363 ORTHO05D000236 1.3e-28 130.6 69 98.6
Prupe.5G010500 Prunus persica HOM05D002044 ORTHO05D005000 3.7e-28 129.0 175 50.3
MCO09G765 Micromonas commoda HOM05D002044 ORTHO05D005000 1.8e-27 126.7 214 36.0
arahy.Tifrunner.gnm1.ann1.2UYT9T Arachis hypogaea HOM05D002044 ORTHO05D005000 7.4e-21 104.8 88 61.4
Cre17.g717750 Chlamydomonas reinhardtii HOM05D002044 ORTHO05D005000 1.2e-18 97.4 219 32.0
PRCOL_00002644 Prasinoderma coloniale HOM05D002044 ORTHO05D005000 2.0e-18 96.7 214 32.2
Zm00001eb115010 Zea mays HOM05D001408 ORTHO05D001312 3.8e-17 92.4 58 75.9
Zm00001eb382800 Zea mays HOM05D002044 ORTHO05D005000 3.6e-15 85.9 54 75.9
FAN04G1187 Fragaria x ananassa HOM05D002044 ORTHO05D005000 7.9e-15 84.7 85 51.8
Zm00001eb145060 Zea mays HOM05D001671 ORTHO05D005000 3.0e-14 82.8 54 72.2
Zm00001eb411660 Zea mays HOM05D002044 ORTHO05D005000 3.0e-14 82.8 86 51.2
Zm00001eb028150 Zea mays HOM05D001671 ORTHO05D005000 3.9e-14 82.4 54 72.2
Zm00001eb426440 Zea mays HOM05D002044 ORTHO05D005000 8.8e-14 81.3 54 72.2
HanXRQChr11g0338941 Helianthus annuus HOM05D002044 ORTHO05D005000 2.6e-13 79.7 86 55.8
Rhsim07G0203200 Rhododendron simsii HOM05D000657 ORTHO05D001476 2.2e-12 76.6 126 38.9
CBR_g943 Chara braunii HOM05D002044 ORTHO05D005000 8.2e-12 74.7 218 30.7
vmacro12487 Vaccinium macrocarpon HOM05D002044 ORTHO05D426557 8.2e-12 74.7 111 41.4
Gohir.D11G188940 Gossypium hirsutum HOM05D002044 ORTHO05D005000 2.2e-09 66.6 37 86.5
AUR62020886 Chenopodium quinoa HOM05D002044 ORTHO05D005000 1.1e-08 64.3 59 54.2
Aqoxy2G02553 Aquilegia oxysepala HOM05D002044 ORTHO05D005000 3.6e-07 59.3 77 46.8
Dinv05626 Davidia involucrata HOM05D002044 ORTHO05D005000 2.3e-06 56.6 63 52.4
MBI16_g19187_MAGBIO Magnolia biondii HOM05D002044 ORTHO05D005000 4.0e-06 55.8 73 42.5
Prupe.8G138300 Prunus persica HOM05D002044 ORTHO05D005337 8.8e-06 54.7 186 28.0


User provided reference genes

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