Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39529 Brassica carinata HOM05D001003 ORTHO05D007825 1.0e-82 310.1 160 100.0
C03p06220 Brassica napus HOM05D001003 ORTHO05D007825 1.0e-58 230.3 135 90.4
C03p63340 Brassica napus HOM05D001003 ORTHO05D007825 9.9e-54 213.8 135 85.9
A02p24500 Brassica napus HOM05D001003 ORTHO05D007825 2.4e-31 139.4 128 66.4
BraA02t07440Z Brassica rapa HOM05D001003 ORTHO05D007825 2.4e-31 139.4 128 66.4
Sp6g01620 Schrenkiella parvula HOM05D001003 ORTHO05D007825 5.3e-31 138.3 128 65.6
BcaB05g23602 Brassica carinata HOM05D001003 ORTHO05D007825 6.9e-31 137.9 128 65.6
BcaC03g16102 Brassica carinata HOM05D001003 ORTHO05D007825 1.5e-30 136.7 128 64.8
C02p38720 Brassica napus HOM05D001003 ORTHO05D007825 4.5e-30 135.2 128 64.1
BolC2t09889H Brassica oleracea HOM05D001003 ORTHO05D007825 4.5e-30 135.2 128 64.1
Aa31LG5G1430 Aethionema arabicum HOM05D001003 ORTHO05D007825 1.3e-29 133.7 128 62.5
AT4G01730 Arabidopsis thaliana HOM05D001003 ORTHO05D007825 2.9e-29 132.5 128 62.5
Thhalv10028590m.g Eutrema salsugineum HOM05D001003 ORTHO05D007825 3.8e-29 132.1 128 63.3
CARHR249950 Cardamine hirsuta HOM05D001003 ORTHO05D007825 8.4e-29 131.0 128 61.7
AL6G51610 Arabidopsis lyrata HOM05D001003 ORTHO05D007825 1.1e-28 130.6 128 60.9
Carub.0006s3548 Capsella rubella HOM05D001003 ORTHO05D007825 1.9e-28 129.8 128 60.2
THA.LOC104801324 Tarenaya hassleriana HOM05D001003 ORTHO05D007825 2.3e-26 122.9 128 57.0
Haze_05151 Corylus avellana HOM05D001003 ORTHO05D007825 5.6e-25 118.2 133 54.1
Sc05g0000030 Simmondsia chinensis HOM05D001003 ORTHO05D007825 5.3e-23 111.7 133 48.1
Manes.01G235300 Manihot esculenta HOM05D001003 ORTHO05D007825 2.6e-22 109.4 127 53.5
Potri.014G112000 Populus trichocarpa HOM05D001003 ORTHO05D007825 3.4e-22 109.0 127 54.3
Potri.002G186800 Populus trichocarpa HOM05D001003 ORTHO05D007825 9.9e-22 107.5 127 52.8
PGR042G2921 Punica granatum HOM05D001003 ORTHO05D007825 1.7e-21 106.7 128 52.3
Sabra02G0129500 Salix brachista HOM05D001003 ORTHO05D007825 3.8e-21 105.5 127 52.0
Ciclev10019818m.g Citrus clementina HOM05D001003 ORTHO05D007825 4.9e-21 105.1 120 55.0
Prupe.3G002400 Prunus persica HOM05D001003 ORTHO05D007825 4.9e-21 105.1 127 52.0
DCAR_005715 Daucus carota HOM05D001003 ORTHO05D007825 6.4e-21 104.8 128 52.3
Cpa.g.sc57.19 Carica papaya HOM05D001003 ORTHO05D007825 1.4e-20 103.6 132 52.3
COL.COLO4_23126 Corchorus olitorius HOM05D001003 ORTHO05D007825 1.9e-20 103.2 128 51.6
arahy.Tifrunner.gnm1.ann1.09736N Arachis hypogaea HOM05D001003 ORTHO05D007825 2.5e-20 102.8 128 50.0
arahy.Tifrunner.gnm1.ann1.FXN302 Arachis hypogaea HOM05D001003 ORTHO05D007825 3.2e-20 102.4 128 50.0
Gorai.008G134400 Gossypium raimondii HOM05D001003 ORTHO05D007825 3.2e-20 102.4 128 50.8
Hma1.2p1_0408F.1_g146280 Hydrangea macrophylla HOM05D001003 ORTHO05D007825 4.2e-20 102.1 128 50.0
PSO170G3511 Papaver somniferum HOM05D001003 ORTHO05D007825 4.2e-20 102.1 128 50.0
Lj2A1216T57 Lonicera japonica HOM05D001003 ORTHO05D007825 5.5e-20 101.7 128 49.2
Cfa004915 Carpinus fangiana HOM05D001003 ORTHO05D007825 7.1e-20 101.3 128 50.8
Thecc.01G325600 Theobroma cacao HOM05D001003 ORTHO05D007825 7.1e-20 101.3 128 49.2
Aqoxy5G02823 Aquilegia oxysepala HOM05D001003 ORTHO05D007825 9.3e-20 100.9 127 51.2
Duzib133G0856 Durio zibethinus HOM05D001003 ORTHO05D007825 9.3e-20 100.9 128 49.2
TWI59G0358 Tripterygium wilfordii HOM05D001003 ORTHO05D007825 9.3e-20 100.9 128 52.3
TAR633G1580 Trochodendron aralioides HOM05D001003 ORTHO05D007825 1.6e-19 100.1 128 49.2
Actinidia21337 Actinidia chinensis HOM05D001003 ORTHO05D007825 2.1e-19 99.8 128 49.2
PSO357G0515 Papaver somniferum HOM05D001003 ORTHO05D007825 2.1e-19 99.8 128 49.2
Rhsim01G0000600 Rhododendron simsii HOM05D001003 ORTHO05D007825 2.1e-19 99.8 128 50.0
Gohir.A12G119700 Gossypium hirsutum HOM05D001003 ORTHO05D007825 3.5e-19 99.0 128 50.8
Gohir.D12G123300 Gossypium hirsutum HOM05D001003 ORTHO05D007825 3.5e-19 99.0 128 50.0
GSVIVG01028245001 Vitis vinifera HOM05D001003 ORTHO05D007825 3.5e-19 99.0 128 48.4
Lsat_1_v5_gn_9_7000 Lactuca sativa HOM05D001003 ORTHO05D007825 4.6e-19 98.6 128 47.7
Peaxi162Scf00309g00810 Petunia axillaris HOM05D001003 ORTHO05D007825 4.6e-19 98.6 134 44.8
Sed0000323 Sechium edule HOM05D001003 ORTHO05D007825 6.0e-19 98.2 129 50.4
Duzib138G1827 Durio zibethinus HOM05D001003 ORTHO05D007825 7.9e-19 97.8 128 49.2
MD17G1285300 Malus domestica HOM05D001003 ORTHO05D007825 7.9e-19 97.8 128 50.8
Cc01_g21770 Coffea canephora HOM05D001003 ORTHO05D007825 1.0e-18 97.4 128 46.9
FAN26G2667 Fragaria x ananassa HOM05D001003 ORTHO05D007825 1.8e-18 96.7 130 53.1
Glyma.10G138200 Glycine max HOM05D001003 ORTHO05D007825 1.8e-18 96.7 128 47.7
Dinv33174 Davidia involucrata HOM05D001003 ORTHO05D007825 3.0e-18 95.9 128 47.7
EL10As5g23619 Beta vulgaris HOM05D001003 ORTHO05D007825 3.9e-18 95.5 128 46.9
QL12p034974 Quercus lobata HOM05D001003 ORTHO05D007825 3.9e-18 95.5 128 48.4
TPR.G3082 Trifolium pratense HOM05D001003 ORTHO05D007825 3.9e-18 95.5 128 46.9
FvH4_1g26210 Fragaria vesca HOM05D001003 ORTHO05D007825 5.1e-18 95.1 128 50.0
CiPaw.07G125800 Carya illinoinensis HOM05D001003 ORTHO05D007825 8.7e-18 94.4 128 48.4
FAN19G3028 Fragaria x ananassa HOM05D001003 ORTHO05D007825 1.1e-17 94.0 128 50.8
FAN28G0583 Fragaria x ananassa HOM05D001003 ORTHO05D007825 1.5e-17 93.6 128 50.0
CANSAT25G3507 Cannabis sativa HOM05D001003 ORTHO05D007825 1.9e-17 93.2 129 47.3
ClCG11G013150 Citrullus lanatus HOM05D001003 ORTHO05D007825 1.9e-17 93.2 130 50.0
Medtr1g085980 Medicago truncatula HOM05D001003 ORTHO05D007825 1.9e-17 93.2 128 46.1
RcHm_v2.0_Chr3g0485751 Rosa chinensis HOM05D001003 ORTHO05D007825 1.9e-17 93.2 130 50.8
TWI23G0884 Tripterygium wilfordii HOM05D001003 ORTHO05D007825 1.9e-17 93.2 128 50.0
Ca_10239_v3 Cicer arietinum L. HOM05D001003 ORTHO05D007825 2.5e-17 92.8 128 45.3
Nn4g25340 Nelumbo nucifera HOM05D001003 ORTHO05D007825 2.5e-17 92.8 128 47.7
Actinidia06414 Actinidia chinensis HOM05D001003 ORTHO05D007825 3.3e-17 92.4 128 45.3
Oeu052588.2 Olea europaea HOM05D001003 ORTHO05D007825 3.3e-17 92.4 135 43.0
MBI18_g10372_MAGBIO Magnolia biondii HOM05D001003 ORTHO05D007825 4.3e-17 92.0 128 48.4
ECA247G3135 Erigeron canadensis HOM05D001003 ORTHO05D007825 7.4e-17 91.3 129 47.3
Psat6g158800 Pisum sativum HOM05D001003 ORTHO05D007825 7.4e-17 91.3 128 46.1
vmacro02356 Vaccinium macrocarpon HOM05D001003 ORTHO05D007825 7.4e-17 91.3 128 46.1
Zm00001eb253040 Zea mays HOM05D001003 ORTHO05D007825 1.3e-16 90.5 137 41.6
CsaV3_5G029680 Cucumis sativus L. HOM05D001003 ORTHO05D007825 2.8e-16 89.4 130 47.7
A01p22100 Brassica napus HOM05D001003 ORTHO05D007825 6.2e-16 88.2 61 78.7
AUR62011766 Chenopodium quinoa HOM05D001003 ORTHO05D007825 1.1e-15 87.4 129 45.7
Sabra14G0082300 Salix brachista HOM05D001003 ORTHO05D007825 1.1e-15 87.4 93 55.9
VMungo0720G0254 Vigna mungo HOM05D001003 ORTHO05D007825 1.1e-15 87.4 128 43.0
Eucgr.A01002 Eucalyptus grandis HOM05D001003 ORTHO05D007825 1.4e-15 87.0 133 46.6
HanXRQChr15g0464501 Helianthus annuus HOM05D001003 ORTHO05D007825 1.4e-15 87.0 130 46.2
Lj5g0012064 Lotus japonicus HOM05D001003 ORTHO05D007825 1.4e-15 87.0 128 45.3
BraA01t02118Z Brassica rapa HOM05D001003 ORTHO05D007825 3.1e-15 85.9 58 79.3
Lalb_Chr21g0309841 Lupinus albus HOM05D001003 ORTHO05D007825 1.2e-14 84.0 128 43.8
Solyc01g079100.3 Solanum lycopersicum HOM05D001003 ORTHO05D007825 1.2e-14 84.0 129 42.6
Sopen01g030610 Solanum pennellii HOM05D001003 ORTHO05D007825 1.2e-14 84.0 129 42.6
PGSC0003DMG400001118 Solanum tuberosum HOM05D001003 ORTHO05D007825 1.2e-14 84.0 129 41.9
BolC3t18587H Brassica oleracea HOM05D001003 ORTHO05D007825 1.5e-14 83.6 55 78.2
Migut.D00011 Erythranthe guttata HOM05D001003 ORTHO05D007825 2.0e-14 83.2 128 41.4
Os12g0263100 Oryza sativa ssp. japonica HOM05D001003 ORTHO05D007825 2.0e-14 83.2 129 41.9
SEGI_18982 Sequoiadendron giganteum HOM05D001003 ORTHO05D007825 2.0e-14 83.2 131 41.2
CAN.G179.32 Capsicum annuum HOM05D001003 ORTHO05D007825 3.4e-14 82.4 129 41.1
Phvul.007G209100 Phaseolus vulgaris HOM05D001003 ORTHO05D007825 7.6e-14 81.3 128 42.2
CSS0010381 Camellia sinensis var. sinensis HOM05D001003 ORTHO05D007825 1.3e-13 80.5 124 46.0
BolC3t13129H Brassica oleracea HOM05D001003 ORTHO05D007825 2.2e-13 79.7 54 77.8
HanXRQChr10g0286471 Helianthus annuus HOM05D001003 ORTHO05D007825 3.8e-13 79.0 129 42.6
Hund11622 Selenicereus undatus HOM05D001003 ORTHO05D007825 3.8e-13 79.0 141 39.7
MSTRG.18060 Avicennia marina HOM05D001003 ORTHO05D007825 4.9e-13 78.6 128 39.8
Nitab4.5_0000222g0390 Nicotiana tabacum HOM05D001003 ORTHO05D007825 6.5e-13 78.2 129 41.1
Atru.chr5.857 Acer truncatum HOM05D001003 ORTHO05D007825 2.5e-12 76.3 128 43.0
FAN23G0120 Fragaria x ananassa HOM05D001003 ORTHO05D007825 1.2e-11 73.9 94 51.1
SGA_v2.0_scaffold417G51249 Striga asiatica HOM05D001003 ORTHO05D007825 7.9e-11 71.2 106 42.5
ATR0796G154 Amborella trichopoda HOM05D001003 ORTHO05D007825 1.3e-10 70.5 128 39.8
Atru.BG.64.p Acer truncatum HOM05D001003 ORTHO05D007825 3.3e-09 65.9 128 39.8
A10p07010 Brassica napus HOM05D001003 ORTHO05D007825 3.3e-09 65.9 88 48.9
AUR62024612 Chenopodium quinoa HOM05D001003 ORTHO05D007825 4.3e-09 65.5 95 44.2
Nitab4.5_0003092g0040 Nicotiana tabacum HOM05D001003 ORTHO05D007825 9.7e-09 64.3 95 43.2
C03p70920 Brassica napus HOM05D016513 ORTHO05D027391 1.1e-07 60.8 48 68.8
BolC3t19367H Brassica oleracea HOM05D016513 ORTHO05D027391 1.1e-07 60.8 48 68.8
BolC8t48236H Brassica oleracea HOM05D016513 ORTHO05D027391 1.1e-07 60.8 48 68.8
CDE12G0884 Ceratophyllum demersum HOM05D001003 ORTHO05D007825 1.1e-07 60.8 91 44.0
CDE01G0170 Ceratophyllum demersum HOM05D001003 ORTHO05D007825 1.8e-07 60.1 91 44.0
Nn5g31020 Nelumbo nucifera HOM05D001003 ORTHO05D002734 2.0e-06 56.6 111 31.5
Psat2g127720 Pisum sativum HOM05D001003 ORTHO05D003884 2.6e-06 56.2 141 30.5
AT3G22180 Arabidopsis thaliana HOM05D001003 ORTHO05D002734 4.5e-06 55.5 111 35.1
unitig_22.g6501 Utricularia gibba HOM05D001003 ORTHO05D003884 5.9e-06 55.1 111 34.2
Ah.03g134630 Amaranthus hybridus HOM05D001003 ORTHO05D003884 7.7e-06 54.7 144 33.3
BolC6t39551H Brassica oleracea HOM05D001003 ORTHO05D007825 1.0e-05 54.3 52 63.5
Oeu054521.1 Olea europaea HOM05D001003 ORTHO05D002734 1.0e-05 54.3 111 33.3


User provided reference genes

Program Settings