Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39499 Brassica carinata HOM05D007494 ORTHO05D009621 5.3e-237 823.9 404 100.0
C08p25440 Brassica napus HOM05D007494 ORTHO05D009621 5.3e-237 823.9 404 100.0
BcaB01g00617 Brassica carinata HOM05D007494 ORTHO05D009621 4.1e-141 505.4 407 65.8
BolC8t50166H Brassica oleracea HOM05D007494 ORTHO05D009621 4.6e-132 475.3 294 83.3
A09p43390 Brassica napus HOM05D007494 ORTHO05D009621 3.3e-122 442.6 243 88.5
Thhalv10011090m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 3.9e-115 419.1 412 56.6
BcaC07g39504 Brassica carinata HOM05D007494 ORTHO05D009621 1.1e-101 374.4 385 53.5
C08p25490 Brassica napus HOM05D007494 ORTHO05D009621 1.1e-101 374.4 385 53.5
BraA09t39811Z Brassica rapa HOM05D007494 ORTHO05D009621 7.1e-101 371.7 383 53.0
C08p25460 Brassica napus HOM05D007494 ORTHO05D009621 2.3e-99 366.7 400 51.5
AL5G30530 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 1.3e-97 360.9 402 51.2
A09p43410 Brassica napus HOM05D007494 ORTHO05D009621 4.5e-95 352.4 387 50.9
AL1G67140 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 6.5e-94 348.6 356 52.5
BraA09t39810Z Brassica rapa HOM05D007494 ORTHO05D009621 1.9e-93 347.1 387 50.6
BolC8t50168H Brassica oleracea HOM05D007494 ORTHO05D009621 2.9e-86 323.2 379 48.8
Carub.0001s2024 Capsella rubella HOM05D007494 ORTHO05D009621 3.2e-85 319.7 389 49.6
AT1G57580 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.0e-83 314.7 383 48.6
BolC8t50169H Brassica oleracea HOM05D007494 ORTHO05D009621 6.7e-83 312.0 248 66.5
AL1G33790 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 7.4e-82 308.5 406 46.8
Sp5g11780 Schrenkiella parvula HOM05D007494 ORTHO05D009621 4.1e-80 302.8 285 57.5
AT1G20795 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 5.3e-80 302.4 353 49.6
Sp1g18490 Schrenkiella parvula HOM05D007494 ORTHO05D009621 2.9e-78 296.6 389 44.7
Thhalv10009430m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 6.7e-75 285.4 360 45.6
Thhalv10015953m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 4.4e-74 282.7 381 44.6
AT1G20790 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.3e-73 281.2 361 46.3
BcaB07g30752 Brassica carinata HOM05D007494 ORTHO05D009621 1.1e-69 268.1 356 41.0
C08p20370 Brassica napus HOM05D007494 ORTHO05D009621 3.0e-67 260.0 356 40.2
BolC8t49665H Brassica oleracea HOM05D007494 ORTHO05D009621 3.0e-67 260.0 356 40.2
BcaC07g39053 Brassica carinata HOM05D007494 ORTHO05D009621 4.0e-67 259.6 356 40.2
A08p29250 Brassica napus HOM05D007494 ORTHO05D009621 3.3e-66 256.5 354 40.4
BcaC07g39502 Brassica carinata HOM05D007494 ORTHO05D009621 4.4e-66 256.1 194 67.0
C08p25470 Brassica napus HOM05D007494 ORTHO05D009621 4.4e-66 256.1 194 67.0
BcaB03g12853 Brassica carinata HOM05D007494 ORTHO05D009621 2.2e-65 253.8 354 39.8
BraA08t34860Z Brassica rapa HOM05D007494 ORTHO05D009621 2.8e-65 253.4 354 39.8
AL1G33230 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 1.0e-59 235.0 397 39.5
BcaB03g13899 Brassica carinata HOM05D007494 ORTHO05D009621 3.0e-59 233.4 339 40.7
AT1G20735 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 8.8e-59 231.9 401 40.4
AT1G20940 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 8.8e-59 231.9 399 38.3
Thhalv10012024m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 7.5e-58 228.8 327 42.5
AL1G45220 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 6.3e-57 225.7 409 38.1
THA.LOC104813281 Tarenaya hassleriana HOM05D007494 ORTHO05D009621 1.4e-56 224.6 414 36.7
AT1G20800 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 7.0e-56 222.2 399 39.6
A08p28830 Brassica napus HOM05D007494 ORTHO05D009621 7.0e-56 222.2 397 37.3
BraA08t34811Z Brassica rapa HOM05D007494 ORTHO05D009621 9.1e-56 221.9 362 39.0
C08p21040 Brassica napus HOM05D007494 ORTHO05D009621 2.7e-55 220.3 392 37.5
BcaC07g39500 Brassica carinata HOM05D007494 ORTHO05D009621 2.3e-54 217.2 206 55.8
BolC8t49740H Brassica oleracea HOM05D007494 ORTHO05D009621 2.9e-54 216.9 393 37.4
BcaB03g11879 Brassica carinata HOM05D007494 ORTHO05D009621 8.6e-54 215.3 394 37.1
BcaC07g39120 Brassica carinata HOM05D007494 ORTHO05D009621 8.6e-54 215.3 395 37.0
AL1G33970 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 2.5e-53 213.8 383 37.6
BcaB02g08200 Brassica carinata HOM05D007494 ORTHO05D009621 4.2e-53 213.0 364 37.4
Carub.0001s2025 Capsella rubella HOM05D007494 ORTHO05D009621 3.6e-52 209.9 458 34.9
AT1G57565 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 2.3e-51 207.2 196 54.6
Aa31LG7G4950 Aethionema arabicum HOM05D007494 ORTHO05D009621 5.7e-50 202.6 370 37.0
A03p18740 Brassica napus HOM05D007494 ORTHO05D009621 1.3e-49 201.4 380 38.2
BraA03t11134Z Brassica rapa HOM05D007494 ORTHO05D009621 2.2e-49 200.7 381 38.6
Carub.0005s1178 Capsella rubella HOM05D007494 ORTHO05D009621 2.8e-49 200.3 388 37.9
BcaB03g12780 Brassica carinata HOM05D007494 ORTHO05D009621 8.3e-49 198.7 369 35.8
BolC8t49745H Brassica oleracea HOM05D007494 ORTHO05D009621 1.1e-48 198.4 304 41.1
THA.LOC104813247 Tarenaya hassleriana HOM05D007494 ORTHO05D009621 1.4e-48 198.0 356 36.5
A09p43460 Brassica napus HOM05D007494 ORTHO05D009621 3.1e-48 196.8 306 41.2
AT1G20240 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 2.7e-47 193.7 344 38.4
BcaB01g00618 Brassica carinata HOM05D007494 ORTHO05D009621 4.5e-47 193.0 251 48.2
BraA09t39808Z Brassica rapa HOM05D007494 ORTHO05D009621 5.0e-46 189.5 103 92.2
AT1G20360 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 4.7e-44 183.0 292 40.8
Carub.0001s2057 Capsella rubella HOM05D007494 ORTHO05D009621 2.6e-42 177.2 405 33.3
Carub.0004s0895 Capsella rubella HOM05D007494 ORTHO05D009621 1.3e-41 174.9 381 35.7
THA.LOC104813248 Tarenaya hassleriana HOM05D007494 ORTHO05D009621 5.4e-40 169.5 375 33.1
Thhalv10012236m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 5.0e-38 162.9 331 32.9
Thhalv10012123m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 1.6e-36 157.9 264 39.4
Carub.0001s1977 Capsella rubella HOM05D007494 ORTHO05D009621 2.8e-36 157.1 265 41.1
Aa31LG7G4960 Aethionema arabicum HOM05D007494 ORTHO05D009621 1.1e-35 155.2 389 33.4
Aa31LG8G15360 Aethionema arabicum HOM05D007494 ORTHO05D009621 1.4e-35 154.8 302 36.1
C08p21030 Brassica napus HOM05D007494 ORTHO05D009621 2.3e-35 154.1 249 39.8
A09p43420 Brassica napus HOM05D007494 ORTHO05D009621 8.9e-35 152.1 212 43.4
BraA09t39809Z Brassica rapa HOM05D007494 ORTHO05D009621 8.9e-35 152.1 105 74.3
AT1G20690 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.2e-34 151.8 222 40.5
BcaC07g39114 Brassica carinata HOM05D007494 ORTHO05D009621 1.5e-34 151.4 373 32.2
BcaC07g39503 Brassica carinata HOM05D007494 ORTHO05D032917 1.5e-34 151.4 133 60.9
C08p25480 Brassica napus HOM05D007494 ORTHO05D032917 1.5e-34 151.4 133 60.9
CARHR020740 Cardamine hirsuta HOM05D007494 ORTHO05D009621 1.5e-34 151.4 273 37.0
Thhalv10011940m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 2.0e-34 151.0 336 32.1
Thhalv10012136m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 4.4e-34 149.8 317 33.1
Aa31LG8G15370 Aethionema arabicum HOM05D007494 ORTHO05D009621 5.8e-34 149.4 337 35.0
Thhalv10012172m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 8.3e-33 145.6 290 34.1
AL1G33090 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 1.2e-31 141.7 343 33.5
Sp1g18390 Schrenkiella parvula HOM05D007494 ORTHO05D009621 5.2e-27 126.3 188 39.4
QL02p015450 Quercus lobata HOM05D007494 ORTHO05D009621 8.3e-25 119.0 359 28.4
AT1G20290 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 4.3e-21 106.7 183 38.8
Duzib041G0294 Durio zibethinus HOM05D007494 ORTHO05D009621 3.0e-14 84.0 339 26.8
BolC8t50170H Brassica oleracea HOM05D007494 ORTHO05D032917 4.0e-11 73.6 133 39.8
Aa31LG8G15340 Aethionema arabicum HOM05D007494 ORTHO05D009621 5.3e-11 73.2 125 39.2
AL8G44280 Arabidopsis lyrata HOM05D000015 ORTHO05D000734 6.9e-11 72.8 83 50.6
AL1G32830 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 1.5e-10 71.6 71 52.1
Peaxi162Scf00171g00817 Petunia axillaris HOM05D008697 ORTHO05D010866 2.6e-10 70.9 313 24.3
Oeu004534.1 Olea europaea HOM05D008697 ORTHO05D010866 1.3e-09 68.6 217 30.4
Oeu008441.1 Olea europaea HOM05D008697 ORTHO05D010866 4.9e-09 66.6 207 30.4
Nitab4.5_0005200g0080 Nicotiana tabacum HOM05D008697 ORTHO05D010866 1.1e-08 65.5 226 28.3
Thecc.08G063600 Theobroma cacao HOM05D007494 ORTHO05D009621 1.9e-08 64.7 122 34.4
C08p21080 Brassica napus HOM05D007494 ORTHO05D009621 3.2e-08 63.9 110 37.3
CAN.G1909.14 Capsicum annuum HOM05D008697 ORTHO05D010866 9.3e-08 62.4 303 25.1
Thhalv10021927m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 9.3e-08 62.4 159 30.8
Sopen03g029100 Solanum pennellii HOM05D008697 ORTHO05D010866 2.7e-07 60.8 172 27.9
Aqoxy5G01482 Aquilegia oxysepala HOM05D000007 ORTHO05D000017 1.7e-06 58.2 266 22.6
Nn4g25094 Nelumbo nucifera HOM05D002420 ORTHO05D002422 2.3e-06 57.8 301 23.9
Sopen03g029650 Solanum pennellii HOM05D008697 ORTHO05D010866 2.3e-06 57.8 215 22.8
PGSC0003DMG400015218 Solanum tuberosum HOM05D008697 ORTHO05D010923 3.9e-06 57.0 150 28.7
PGSC0003DMG400025634 Solanum tuberosum HOM05D008697 ORTHO05D010866 8.7e-06 55.8 169 28.4


User provided reference genes

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