Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39496 Brassica carinata HOM05D010481 ORTHO05D017550 6.3e-154 547.4 266 100.0
C08p25420 Brassica napus HOM05D010481 ORTHO05D017550 6.3e-154 547.4 266 100.0
BolC8t50164H Brassica oleracea HOM05D010481 ORTHO05D017550 3.0e-79 299.3 151 100.0
A08p07480 Brassica napus HOM05D010481 ORTHO05D017550 3.4e-67 259.2 133 96.2
BcaC08g43520 Brassica carinata HOM05D010481 ORTHO05D017550 3.1e-52 209.5 149 76.5
BolC6t35983H Brassica oleracea HOM05D010481 ORTHO05D017550 4.0e-52 209.1 151 77.5
BcaB06g27714 Brassica carinata HOM05D010481 ORTHO05D094749 9.3e-41 171.4 158 65.2
BraA08t32766Z Brassica rapa HOM05D010481 ORTHO05D017627 3.0e-31 139.8 85 81.2
BcaC07g39497 Brassica carinata HOM05D010481 ORTHO05D017627 2.8e-29 133.3 73 93.2
BcaC07g39432 Brassica carinata HOM05D010481 ORTHO05D017627 3.7e-29 132.9 82 78.0
C07p19990 Brassica napus HOM05D010481 ORTHO05D017627 8.2e-29 131.7 74 85.1
BolC7t42518H Brassica oleracea HOM05D010481 ORTHO05D017627 8.2e-29 131.7 74 85.1
BolC8t50085H Brassica oleracea HOM05D010481 ORTHO05D017627 1.1e-28 131.3 91 72.5
C08p24710 Brassica napus HOM05D010481 ORTHO05D017627 5.3e-28 129.0 73 83.6
BcaC03g16815 Brassica carinata HOM05D010481 ORTHO05D017627 9.1e-28 128.3 74 85.1
BcaC01g02483 Brassica carinata HOM05D000812 ORTHO05D000672 2.1e-24 117.1 60 93.3
C03p64310 Brassica napus HOM05D000812 ORTHO05D000672 2.1e-24 117.1 60 93.3
BolC3t18685H Brassica oleracea HOM05D000812 ORTHO05D000672 2.1e-24 117.1 60 93.3
BraA06t25878Z Brassica rapa HOM05D000812 ORTHO05D000672 2.1e-24 117.1 60 93.3
Sp2g25690 Schrenkiella parvula HOM05D000812 ORTHO05D000672 6.1e-24 115.5 60 88.3
A06p29220 Brassica napus HOM05D000812 ORTHO05D000672 1.4e-23 114.4 60 91.7
Thhalv10004619m.g Eutrema salsugineum HOM05D000812 ORTHO05D000672 1.4e-23 114.4 60 86.7
BcaB02g09654 Brassica carinata HOM05D000812 ORTHO05D000672 3.0e-23 113.2 61 88.5
BcaB07g29844 Brassica carinata HOM05D000812 ORTHO05D000672 3.0e-23 113.2 60 86.7
A02p42380 Brassica napus HOM05D000812 ORTHO05D000672 1.5e-22 110.9 60 85.0
AL8G39410 Arabidopsis lyrata HOM05D000812 ORTHO05D000672 2.0e-22 110.5 60 83.3
AT5G62520 Arabidopsis thaliana HOM05D000812 ORTHO05D000672 2.0e-22 110.5 60 83.3
BcaC03g18157 Brassica carinata HOM05D000812 ORTHO05D000672 2.6e-22 110.2 60 85.0
BcaC03g18162 Brassica carinata HOM05D000812 ORTHO05D000672 2.6e-22 110.2 60 85.0
C02p62270 Brassica napus HOM05D000812 ORTHO05D000672 2.6e-22 110.2 60 85.0
BolC2t12284H Brassica oleracea HOM05D000812 ORTHO05D000672 2.6e-22 110.2 60 85.0
Carub.0008s2319 Capsella rubella HOM05D000812 ORTHO05D000672 9.7e-22 108.2 60 80.0
BraA02t09169Z Brassica rapa HOM05D000812 ORTHO05D000672 1.7e-21 107.5 60 81.7
CARHR276300 Cardamine hirsuta HOM05D000812 ORTHO05D000672 1.4e-20 104.4 60 80.0
Aa31LG11G1120 Aethionema arabicum HOM05D000812 ORTHO05D000672 1.1e-17 94.7 66 71.2
BcaB02g06575 Brassica carinata HOM05D010481 ORTHO05D095072 4.2e-17 92.8 66 74.2
AL5G26990 Arabidopsis lyrata HOM05D000812 ORTHO05D000672 1.4e-12 77.8 60 65.0
Thhalv10011103m.g Eutrema salsugineum HOM05D000812 ORTHO05D000672 1.8e-12 77.4 60 61.7
CARHR156400 Cardamine hirsuta HOM05D000812 ORTHO05D000672 1.2e-11 74.7 60 58.3
C03p19600 Brassica napus HOM05D001188 ORTHO05D001032 2.6e-11 73.6 33 93.9
AT3G47720 Arabidopsis thaliana HOM05D000812 ORTHO05D000672 4.5e-11 72.8 60 58.3
Carub.0005s1385 Capsella rubella HOM05D000812 ORTHO05D000672 5.9e-11 72.4 60 60.0
Sp5g14200 Schrenkiella parvula HOM05D000812 ORTHO05D000672 1.7e-10 70.9 60 56.7
Oeu035994.2 Olea europaea HOM05D000812 ORTHO05D000672 3.8e-10 69.7 66 53.0
Ciclev10020868m.g Citrus clementina HOM05D000812 ORTHO05D000672 5.0e-10 69.3 63 52.4
Potri.012G081100 Populus trichocarpa HOM05D000812 ORTHO05D000672 1.5e-09 67.8 63 52.4
Atru.chr9.2478 Acer truncatum HOM05D000812 ORTHO05D000672 1.9e-09 67.4 63 50.8
Sabra12G0058000 Salix brachista HOM05D000812 ORTHO05D000672 1.9e-09 67.4 63 50.8
Sabra15G0101600 Salix brachista HOM05D000812 ORTHO05D000672 2.5e-09 67.0 63 52.4
MD06G1173800 Malus domestica HOM05D000812 ORTHO05D000672 5.5e-09 65.9 63 47.6
THA.LOC104819437 Tarenaya hassleriana HOM05D000812 ORTHO05D000672 5.5e-09 65.9 68 45.6
QL10p011650 Quercus lobata HOM05D000812 ORTHO05D000672 7.2e-09 65.5 66 45.5
Potri.015G076500 Populus trichocarpa HOM05D000812 ORTHO05D000672 9.4e-09 65.1 66 48.5
Cpa.g.sc76.55 Carica papaya HOM05D000812 ORTHO05D000672 1.2e-08 64.7 66 50.0
Prupe.5G173700 Prunus persica HOM05D000812 ORTHO05D000672 1.6e-08 64.3 63 47.6
GSVIVG01007754001 Vitis vinifera HOM05D000812 ORTHO05D000672 1.6e-08 64.3 63 49.2
Lj5A124T71 Lonicera japonica HOM05D000812 ORTHO05D000672 2.1e-08 63.9 63 49.2
MD14G1180300 Malus domestica HOM05D000812 ORTHO05D000672 2.7e-08 63.5 63 46.0
Manes.14G065700 Manihot esculenta HOM05D000812 ORTHO05D000672 6.1e-08 62.4 63 47.6
MBI16_g27099_MAGBIO Magnolia biondii HOM05D000812 ORTHO05D000672 8.0e-08 62.0 63 49.2
vmacro19386 Vaccinium macrocarpon HOM05D000812 ORTHO05D000672 1.0e-07 61.6 63 46.0
Eucgr.B00305 Eucalyptus grandis HOM05D000812 ORTHO05D000672 1.4e-07 61.2 63 49.2
MELO3C002263.2 Cucumis melo HOM05D000812 ORTHO05D000672 1.8e-07 60.8 63 47.6
CsaV3_1G008470 Cucumis sativus L. HOM05D000812 ORTHO05D000672 1.8e-07 60.8 63 47.6
MSTRG.9676 Avicennia marina HOM05D000812 ORTHO05D000672 2.3e-07 60.5 63 49.2
ClCG01G013140 Citrullus lanatus HOM05D000812 ORTHO05D000672 2.3e-07 60.5 63 47.6
DCAR_031317 Daucus carota HOM05D000812 ORTHO05D000672 2.3e-07 60.5 63 46.0
vmacro19387 Vaccinium macrocarpon HOM05D000812 ORTHO05D000672 4.0e-07 59.7 55 52.7
TWI23G0831 Tripterygium wilfordii HOM05D000812 ORTHO05D000672 5.2e-07 59.3 66 43.9
C07p22270 Brassica napus HOM05D010481 ORTHO05D102170 6.7e-07 58.9 42 66.7
Aqoxy3G01040 Aquilegia oxysepala HOM05D000812 ORTHO05D000672 8.8e-07 58.5 66 48.5
Glyma.04G183100 Glycine max HOM05D000812 ORTHO05D000672 8.8e-07 58.5 62 48.4
Manes.13G029600 Manihot esculenta HOM05D000812 ORTHO05D000672 8.8e-07 58.5 61 50.8
Lj4g0011605 Lotus japonicus HOM05D000812 ORTHO05D000672 1.2e-06 58.2 84 42.9
Actinidia19097 Actinidia chinensis HOM05D000812 ORTHO05D000672 1.5e-06 57.8 67 41.8
Eucgr.B00313 Eucalyptus grandis HOM05D000812 ORTHO05D000672 1.5e-06 57.8 63 44.4
RcHm_v2.0_Chr7g0193541 Rosa chinensis HOM05D000812 ORTHO05D000672 1.5e-06 57.8 66 43.9
COL.COLO4_30038 Corchorus olitorius HOM05D000812 ORTHO05D000672 2.0e-06 57.4 63 46.0
Gorai.008G295300 Gossypium raimondii HOM05D000812 ORTHO05D000672 2.0e-06 57.4 63 46.0
Sc12g0005320 Simmondsia chinensis HOM05D000812 ORTHO05D000672 2.0e-06 57.4 64 39.1
vmacro16609 Vaccinium macrocarpon HOM05D000812 ORTHO05D000672 2.0e-06 57.4 62 45.2
C03p53530 Brassica napus HOM05D016493 ORTHO05D021685 2.6e-06 57.0 118 33.9
BolC3t17613H Brassica oleracea HOM05D016493 ORTHO05D021685 2.6e-06 57.0 118 33.9
CSS0017926 Camellia sinensis var. sinensis HOM05D000812 ORTHO05D000672 2.6e-06 57.0 63 42.9
Cfa019133 Carpinus fangiana HOM05D000812 ORTHO05D000672 2.6e-06 57.0 63 47.6
Haze_07472 Corylus avellana HOM05D000812 ORTHO05D000672 2.6e-06 57.0 63 47.6
Eucgr.B00314 Eucalyptus grandis HOM05D000812 ORTHO05D000672 2.6e-06 57.0 63 47.6
Phvul.003G200500 Phaseolus vulgaris HOM05D000812 ORTHO05D000672 2.6e-06 57.0 58 50.0
arahy.Tifrunner.gnm1.ann1.V0ST4M Arachis hypogaea HOM05D000812 ORTHO05D000672 3.3e-06 56.6 61 49.2
Dinv20653 Davidia involucrata HOM05D000812 ORTHO05D000672 3.3e-06 56.6 62 43.5
Lalb_Chr11g0071321 Lupinus albus HOM05D000812 ORTHO05D000672 3.3e-06 56.6 61 49.2
Thecc.03G012700 Theobroma cacao HOM05D000812 ORTHO05D000672 3.3e-06 56.6 63 46.0
TAR374G0978 Trochodendron aralioides HOM05D000812 ORTHO05D000672 3.3e-06 56.6 62 43.5
TAR626G0217 Trochodendron aralioides HOM05D000812 ORTHO05D000672 3.3e-06 56.6 66 42.4
CiPaw.12G026600 Carya illinoinensis HOM05D000812 ORTHO05D000672 4.4e-06 56.2 59 45.8
Gohir.D12G274800 Gossypium hirsutum HOM05D000812 ORTHO05D000672 4.4e-06 56.2 63 46.0
Lj1g0007843 Lotus japonicus HOM05D000812 ORTHO05D000672 4.4e-06 56.2 65 41.5
Nn3g16865 Nelumbo nucifera HOM05D000812 ORTHO05D000672 4.4e-06 56.2 62 43.5
CiPaw.11G026200 Carya illinoinensis HOM05D000812 ORTHO05D000672 5.7e-06 55.8 52 55.8
Gohir.A12G274100 Gossypium hirsutum HOM05D000812 ORTHO05D000672 5.7e-06 55.8 63 42.9
Lsat_1_v5_gn_4_75180 Lactuca sativa HOM05D000812 ORTHO05D000672 5.7e-06 55.8 66 48.5
arahy.Tifrunner.gnm1.ann1.7WJT5G Arachis hypogaea HOM05D000812 ORTHO05D000672 7.5e-06 55.5 62 46.8
arahy.Tifrunner.gnm1.ann1.S65KYS Arachis hypogaea HOM05D000812 ORTHO05D000672 7.5e-06 55.5 62 46.8
Cc04_g14100 Coffea canephora HOM05D000812 ORTHO05D000672 7.5e-06 55.5 62 45.2
Sed0012184 Sechium edule HOM05D000812 ORTHO05D000672 7.5e-06 55.5 63 44.4


User provided reference genes

Program Settings