Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39413 Brassica carinata HOM05D009821 ORTHO05D005964 0.0e+00 1496.5 768 100.0
C08p24510 Brassica napus HOM05D009821 ORTHO05D005964 0.0e+00 1377.5 797 92.0
BolC8t50069H Brassica oleracea HOM05D009821 ORTHO05D005964 0.0e+00 1376.7 797 92.0
A06p18270 Brassica napus HOM05D009821 ORTHO05D005964 0.0e+00 1113.6 798 79.8
BraA06t24910Z Brassica rapa HOM05D009821 ORTHO05D005964 0.0e+00 1112.4 805 79.5
BcaB01g00702 Brassica carinata HOM05D009821 ORTHO05D005964 1.2e-269 933.3 877 66.4
BcaB02g09591 Brassica carinata HOM05D009821 ORTHO05D005964 4.1e-206 722.2 919 54.5
Sp5g12600 Schrenkiella parvula HOM05D009821 ORTHO05D005964 7.0e-198 694.9 947 52.7
BcaB05g23119 Brassica carinata HOM05D009821 ORTHO05D005964 1.2e-197 694.1 924 51.9
CARHR158490 Cardamine hirsuta HOM05D009821 ORTHO05D005964 7.2e-195 684.9 935 51.3
A06p28240 Brassica napus HOM05D009821 ORTHO05D005964 5.7e-192 675.2 920 52.7
BraA06t25767Z Brassica rapa HOM05D009821 ORTHO05D005964 5.7e-192 675.2 920 52.7
Carub.0005s1582 Capsella rubella HOM05D009821 ORTHO05D005964 2.7e-189 666.4 948 49.8
AL5G29280 Arabidopsis lyrata HOM05D009821 ORTHO05D005964 1.7e-180 637.1 936 49.3
AT3G49490 Arabidopsis thaliana HOM05D009821 ORTHO05D005964 2.3e-180 636.7 958 48.5
C03p65560 Brassica napus HOM05D009821 ORTHO05D005964 5.2e-177 625.5 913 50.8
BcaC01g02410 Brassica carinata HOM05D009821 ORTHO05D005964 4.4e-176 622.5 913 50.6
BolC3t18811H Brassica oleracea HOM05D009821 ORTHO05D005964 1.1e-174 617.8 915 50.4
BcaC09g49952 Brassica carinata HOM05D009821 ORTHO05D005964 2.7e-173 613.2 877 49.6
C01p30840 Brassica napus HOM05D009821 ORTHO05D005964 3.5e-173 612.8 894 48.9
A01p24720 Brassica napus HOM05D009821 ORTHO05D005964 7.1e-158 562.0 826 48.5
BraA01t02384Z Brassica rapa HOM05D009821 ORTHO05D005964 7.1e-158 562.0 826 48.5
BolC1t03016H Brassica oleracea HOM05D009821 ORTHO05D005964 1.3e-154 551.2 840 47.6
THA.LOC104799674 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 2.7e-80 304.3 592 40.0
Aa31LG11G3790 Aethionema arabicum HOM05D009821 ORTHO05D005964 3.5e-80 303.9 840 33.5
Duzib205G0597 Durio zibethinus HOM05D006657 ORTHO05D005964 1.2e-24 119.4 188 39.4
Gorai.004G125800 Gossypium raimondii HOM05D006657 ORTHO05D005964 4.6e-24 117.5 317 29.7
Gohir.D08G117100 Gossypium hirsutum HOM05D006657 ORTHO05D005964 6.0e-24 117.1 317 29.7
THA.LOC104803312 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 6.0e-24 117.1 239 37.2
Duzib068G0081 Durio zibethinus HOM05D006657 ORTHO05D005964 1.6e-21 109.0 188 35.6
Duzib084G0166 Durio zibethinus HOM05D006657 ORTHO05D005964 1.8e-20 105.5 178 35.4
Thecc.03G210000 Theobroma cacao HOM05D006657 ORTHO05D005964 3.1e-20 104.8 229 32.8
COL.COLO4_14382 Corchorus olitorius HOM05D006657 ORTHO05D005964 6.9e-20 103.6 187 35.8
Dinv17292 Davidia involucrata HOM05D006657 ORTHO05D005964 8.4e-18 96.7 213 32.9
Lalb_Chr23g0272001 Lupinus albus HOM05D006657 ORTHO05D005964 1.4e-17 95.9 490 24.7
CANSAT21G0900 Cannabis sativa HOM05D006657 ORTHO05D005964 1.9e-17 95.5 628 24.4
Sabra12G0008600 Salix brachista HOM05D006657 ORTHO05D005964 3.2e-17 94.7 400 25.8
Atru.chr12.2479 Acer truncatum HOM05D006657 ORTHO05D005964 5.5e-17 94.0 498 24.3
Potri.015G003700 Populus trichocarpa HOM05D006657 ORTHO05D005964 7.1e-17 93.6 427 25.5
Dinv29204 Davidia involucrata HOM05D006657 ORTHO05D005964 2.1e-16 92.0 239 29.3
Potri.012G007000 Populus trichocarpa HOM05D006657 ORTHO05D005964 2.7e-16 91.7 483 24.2
Prupe.2G320100 Prunus persica HOM05D006657 ORTHO05D005964 1.0e-15 89.7 334 27.2
MD01G1229500 Malus domestica HOM05D006657 ORTHO05D005964 1.3e-15 89.4 195 33.3
GSVIVG01038660001 Vitis vinifera HOM05D006657 ORTHO05D005964 1.8e-15 89.0 481 23.7
TAR374G0213 Trochodendron aralioides HOM05D006657 ORTHO05D005964 3.9e-15 87.8 225 32.0
Cc07_g20200 Coffea canephora HOM05D006657 ORTHO05D005964 1.5e-14 85.9 206 34.0
Sabra15G0002400 Salix brachista HOM05D006657 ORTHO05D005964 1.9e-14 85.5 422 26.3
Sabra12G0004100 Salix brachista HOM05D006657 ORTHO05D005964 2.5e-14 85.1 564 23.6
VMungo1309G0886 Vigna mungo HOM05D006657 ORTHO05D005964 2.5e-14 85.1 497 23.3
Ciclev10018632m.g Citrus clementina HOM05D006657 ORTHO05D005964 3.3e-14 84.7 359 27.3
MD07G1301500 Malus domestica HOM05D006657 ORTHO05D005964 3.3e-14 84.7 328 28.7
TAR375G0071 Trochodendron aralioides HOM05D006657 ORTHO05D005964 3.3e-14 84.7 273 28.9
Actinidia34275 Actinidia chinensis HOM05D006657 ORTHO05D005964 4.3e-14 84.3 243 28.8
FAN03G1526 Fragaria x ananassa HOM05D006657 ORTHO05D005964 4.3e-14 84.3 426 24.6
FAN10G1617 Fragaria x ananassa HOM05D006657 ORTHO05D005964 9.6e-14 83.2 430 26.5
FAN10G2847 Fragaria x ananassa HOM05D006657 ORTHO05D005964 9.6e-14 83.2 354 28.0
Glyma.04G227100 Glycine max HOM05D006657 ORTHO05D005964 9.6e-14 83.2 525 23.2
FvH4_7g33030 Fragaria vesca HOM05D006657 ORTHO05D005964 1.6e-13 82.4 445 25.2
FAN01G2018 Fragaria x ananassa HOM05D006657 ORTHO05D005964 1.6e-13 82.4 427 25.5
CiPaw.06G040100 Carya illinoinensis HOM05D006657 ORTHO05D005964 2.1e-13 82.0 420 25.0
RcHm_v2.0_Chr1g0383041 Rosa chinensis HOM05D006657 ORTHO05D005964 2.1e-13 82.0 218 29.8
Actinidia08706 Actinidia chinensis HOM05D006657 ORTHO05D005964 2.8e-13 81.6 225 28.0
Rhsim03G0216600 Rhododendron simsii HOM05D006657 ORTHO05D005964 3.7e-13 81.3 226 30.1
vmacro06453 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 3.7e-13 81.3 229 29.7
Haze_00307 Corylus avellana HOM05D006657 ORTHO05D005964 4.8e-13 80.9 554 23.8
SGA_v2.0_scaffold44G16853 Striga asiatica HOM05D006657 ORTHO05D005964 4.8e-13 80.9 179 34.6
Cpa.g.sc9.388 Carica papaya HOM05D006657 ORTHO05D005964 6.3e-13 80.5 198 31.8
Phvul.009G038600 Phaseolus vulgaris HOM05D006657 ORTHO05D005964 1.1e-12 79.7 214 29.9
Manes.01G044100 Manihot esculenta HOM05D006657 ORTHO05D005964 1.4e-12 79.3 413 25.4
Sed0019147 Sechium edule HOM05D006657 ORTHO05D005964 1.4e-12 79.3 187 28.9
Cfa016147 Carpinus fangiana HOM05D006657 ORTHO05D005964 1.8e-12 79.0 239 28.5
Eucgr.K00044 Eucalyptus grandis HOM05D006657 ORTHO05D005964 1.8e-12 79.0 191 29.8
CAN.G303.40 Capsicum annuum HOM05D006657 ORTHO05D005964 2.4e-12 78.6 219 29.7
CsaV3_4G008600 Cucumis sativus L. HOM05D006657 ORTHO05D005964 2.4e-12 78.6 419 24.3
Hund23980 Selenicereus undatus HOM05D006657 ORTHO05D005964 6.9e-12 77.0 228 32.0
Psat5g071280 Pisum sativum HOM05D006657 ORTHO05D005964 1.2e-11 76.3 251 27.5
SalBow4G2342 Salvia bowleyana HOM05D006657 ORTHO05D005964 1.5e-11 75.9 226 29.6
CSS0010102 Camellia sinensis var. sinensis HOM05D006657 ORTHO05D005964 2.0e-11 75.5 204 27.9
Lalb_Chr11g0067471 Lupinus albus HOM05D006657 ORTHO05D005964 2.0e-11 75.5 496 23.0
Peaxi162Scf00912g00114 Petunia axillaris HOM05D006657 ORTHO05D005964 2.0e-11 75.5 228 30.7
TWI14G0251 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 2.0e-11 75.5 252 28.2
vmacro10166 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 2.0e-11 75.5 183 31.1
SalBow4G2934 Salvia bowleyana HOM05D006657 ORTHO05D005964 2.6e-11 75.1 225 28.9
arahy.Tifrunner.gnm1.ann1.UMZ78C Arachis hypogaea HOM05D006657 ORTHO05D005964 3.4e-11 74.7 199 29.6
QL09p006779 Quercus lobata HOM05D006657 ORTHO05D005964 3.4e-11 74.7 233 27.9
Solyc03g080140.3 Solanum lycopersicum HOM05D006657 ORTHO05D005964 4.5e-11 74.3 181 30.4
TAR629G3494 Trochodendron aralioides HOM05D006657 ORTHO05D005964 4.5e-11 74.3 392 24.5
Cpa.g.sc3.164 Carica papaya HOM05D006657 ORTHO05D005964 5.9e-11 73.9 80 50.0
arahy.Tifrunner.gnm1.ann1.UB23H3 Arachis hypogaea HOM05D006657 ORTHO05D005964 7.6e-11 73.6 200 28.5
PGSC0003DMG400000558 Solanum tuberosum HOM05D006657 ORTHO05D005964 7.6e-11 73.6 184 29.9
TWI23G1261 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 7.6e-11 73.6 316 26.9
PGR042G1854 Punica granatum HOM05D006657 ORTHO05D005964 1.0e-10 73.2 217 29.0
ECA233G2144 Erigeron canadensis HOM05D006657 ORTHO05D005964 1.3e-10 72.8 261 25.7
SGA_v2.0_scaffold18G08476 Striga asiatica HOM05D006657 ORTHO05D005964 1.7e-10 72.4 200 27.0
Rhsim09G0210400 Rhododendron simsii HOM05D006657 ORTHO05D005964 2.2e-10 72.0 241 28.6
Lj1g0002697 Lotus japonicus HOM05D006657 ORTHO05D005964 2.9e-10 71.6 282 27.3
Oeu055400.1 Olea europaea HOM05D006657 ORTHO05D005964 2.9e-10 71.6 224 29.0
Nn1g05264 Nelumbo nucifera HOM05D006657 ORTHO05D005964 3.8e-10 71.2 266 29.7
Sopen03g021870 Solanum pennellii HOM05D006657 ORTHO05D005964 3.8e-10 71.2 183 29.0
Aqoxy5G04358 Aquilegia oxysepala HOM05D006657 ORTHO05D005964 5.0e-10 70.9 209 30.1
CiPaw.05G206100 Carya illinoinensis HOM05D006657 ORTHO05D005964 5.0e-10 70.9 217 29.0
unitig_0.g2439 Utricularia gibba HOM05D006657 ORTHO05D005964 8.4e-10 70.1 265 26.0
Eucgr.A00967 Eucalyptus grandis HOM05D006657 ORTHO05D005964 1.9e-09 68.9 218 29.4
Glyma.06G138000 Glycine max HOM05D006657 ORTHO05D005964 3.2e-09 68.2 192 30.7
Lsat_1_v5_gn_2_134840 Lactuca sativa HOM05D006657 ORTHO05D005964 5.5e-09 67.4 171 33.3
HanXRQChr08g0226001 Helianthus annuus HOM05D006657 ORTHO05D005964 7.2e-09 67.0 369 26.3
Ah.07g204540 Amaranthus hybridus HOM05D006657 ORTHO05D005964 9.3e-09 66.6 165 30.3
Potri.001G452300 Populus trichocarpa HOM05D011672 ORTHO05D011012 2.7e-08 65.1 225 28.9
Ca_16789_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 4.6e-08 64.3 85 42.4
Ca_16805_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 4.6e-08 64.3 85 42.4
DCAR_008990 Daucus carota HOM05D006657 ORTHO05D005964 4.6e-08 64.3 207 25.6
AUR62028098 Chenopodium quinoa HOM05D006657 ORTHO05D005964 7.9e-08 63.5 222 26.1
TPR.G33400 Trifolium pratense HOM05D006657 ORTHO05D005964 7.9e-08 63.5 94 40.4
DCAR_020382 Daucus carota HOM05D006657 ORTHO05D005964 1.0e-07 63.2 191 27.7
Ah.13g070870 Amaranthus hybridus HOM05D006657 ORTHO05D005964 1.3e-07 62.8 294 26.5
Sabra16G0305400 Salix brachista HOM05D011672 ORTHO05D011012 1.8e-07 62.4 203 31.0
Medtr3g093000 Medicago truncatula HOM05D006657 ORTHO05D005964 3.9e-07 61.2 83 41.0
Cc00_g14340 Coffea canephora HOM05D006657 ORTHO05D005964 5.1e-07 60.8 74 43.2
EL10Ac3g05155 Beta vulgaris HOM05D006657 ORTHO05D005964 1.5e-06 59.3 277 24.9
Nitab4.5_0006821g0010 Nicotiana tabacum HOM05D006657 ORTHO05D005964 1.5e-06 59.3 221 26.2
Migut.F00140 Erythranthe guttata HOM05D006657 ORTHO05D005964 4.3e-06 57.8 198 25.8
Nitab4.5_0000021g0080 Nicotiana tabacum HOM05D006657 ORTHO05D005964 4.3e-06 57.8 221 26.7
Sc13g0010540 Simmondsia chinensis HOM05D006657 ORTHO05D005964 4.3e-06 57.8 597 22.4
Eucgr.L00346 Eucalyptus grandis HOM05D013249 ORTHO05D011012 5.7e-06 57.4 167 28.1


User provided reference genes

Program Settings