Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39401 Brassica carinata HOM05D009945 ORTHO05D012028 9.7e-101 370.2 189 100.0
C08p24330 Brassica napus HOM05D009945 ORTHO05D012028 4.8e-100 367.9 189 99.5
BolC8t50051H Brassica oleracea HOM05D009945 ORTHO05D012028 4.8e-100 367.9 189 99.5
BcaC07g39575 Brassica carinata HOM05D009945 ORTHO05D012028 2.4e-99 365.5 189 98.9
C08p26270 Brassica napus HOM05D009945 ORTHO05D012028 2.4e-99 365.5 189 98.9
A06p18400 Brassica napus HOM05D009945 ORTHO05D012028 3.1e-99 365.2 189 98.4
BraA06t24921Z Brassica rapa HOM05D009945 ORTHO05D012028 3.1e-99 365.2 189 98.4
BolC8t50245H Brassica oleracea HOM05D009945 ORTHO05D012028 7.0e-99 364.0 189 98.4
Sp5g12740 Schrenkiella parvula HOM05D009945 ORTHO05D012028 2.1e-95 352.4 189 94.2
BcaB01g00725 Brassica carinata HOM05D009945 ORTHO05D012028 2.7e-95 352.1 189 96.3
AL5G29080 Arabidopsis lyrata HOM05D009945 ORTHO05D012028 3.0e-86 322.0 184 87.5
AT3G49330 Arabidopsis thaliana HOM05D009945 ORTHO05D012028 3.4e-85 318.5 184 86.4
CARHR158270 Cardamine hirsuta HOM05D009945 ORTHO05D012028 2.8e-84 315.5 189 85.7
Carub.0005s1557 Capsella rubella HOM05D009945 ORTHO05D012028 2.3e-81 305.8 184 83.7
Aa31LG4G17890 Aethionema arabicum HOM05D009945 ORTHO05D012028 1.2e-74 283.5 185 78.4
THA.LOC104814943 Tarenaya hassleriana HOM05D009945 ORTHO05D012028 1.9e-48 196.4 169 56.8
CARHR189050 Cardamine hirsuta HOM05D009945 ORTHO05D012028 3.2e-27 125.9 177 42.9
AT5G24370 Arabidopsis thaliana HOM05D009945 ORTHO05D012028 1.4e-22 110.5 177 39.5
Sp2g06060 Schrenkiella parvula HOM05D009945 ORTHO05D012028 1.9e-16 90.1 168 33.3
AT1G56620 Arabidopsis thaliana HOM05D009945 ORTHO05D012028 3.8e-12 75.9 170 32.4
CARHR054860 Cardamine hirsuta HOM05D009945 ORTHO05D012028 6.5e-12 75.1 141 31.2
AL1G66570 Arabidopsis lyrata HOM05D009945 ORTHO05D012028 7.1e-11 71.6 143 33.6
ClCG02G014760 Citrullus lanatus HOM05D008339 ORTHO05D009712 1.1e-08 64.3 161 29.8
Prupe.6G309300 Prunus persica HOM05D008339 ORTHO05D009712 2.5e-08 63.2 166 29.5
Thecc.05G309700 Theobroma cacao HOM05D008339 ORTHO05D009712 5.7e-08 62.0 173 30.1
PGR031G0599 Punica granatum HOM05D008339 ORTHO05D009712 1.6e-07 60.5 177 27.7
AL1G19880 Arabidopsis lyrata HOM05D009911 ORTHO05D009712 2.2e-07 60.1 167 28.1
Ciclev10013648m.g Citrus clementina HOM05D008339 ORTHO05D009712 2.8e-07 59.7 164 26.8
Haze_08675 Corylus avellana HOM05D008339 ORTHO05D009712 2.8e-07 59.7 145 29.0
TAR627G0317 Trochodendron aralioides HOM05D008403 ORTHO05D010317 2.8e-07 59.7 174 30.5
CARHR009330 Cardamine hirsuta HOM05D009911 ORTHO05D009712 3.7e-07 59.3 165 28.5
MD12G1203300 Malus domestica HOM05D008339 ORTHO05D009712 3.7e-07 59.3 170 28.2
PGR004G1038 Punica granatum HOM05D008339 ORTHO05D009712 3.7e-07 59.3 174 26.4
Rhsim11G0099000 Rhododendron simsii HOM05D008339 ORTHO05D009712 3.7e-07 59.3 172 28.5
Sabra05G0018000 Salix brachista HOM05D008339 ORTHO05D009712 4.8e-07 58.9 171 27.5
Cfa012848 Carpinus fangiana HOM05D008339 ORTHO05D009712 8.2e-07 58.2 171 28.1
MELO3C004156.2 Cucumis melo HOM05D008339 ORTHO05D009712 1.1e-06 57.8 152 29.6
PGR031G3971 Punica granatum HOM05D008339 ORTHO05D009712 1.4e-06 57.4 172 27.9
MELO3C004166.2 Cucumis melo HOM05D008339 ORTHO05D009712 1.8e-06 57.0 152 28.9
TAR627G0557 Trochodendron aralioides HOM05D008403 ORTHO05D010317 3.1e-06 56.2 174 27.0
BraA06t23824Z Brassica rapa HOM05D009911 ORTHO05D009712 4.1e-06 55.8 176 26.1
AUR62000433 Chenopodium quinoa HOM05D000060 ORTHO05D004147 5.3e-06 55.5 146 30.1
AL1G66610 Arabidopsis lyrata HOM05D009945 ORTHO05D012028 9.0e-06 54.7 121 31.4


User provided reference genes

Program Settings