Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39377 Brassica carinata HOM05D006526 ORTHO05D024464 5.7e-42 173.7 81 100.0
C08p24000 Brassica napus HOM05D006526 ORTHO05D024464 4.5e-39 164.1 82 95.1
BolC8t50022H Brassica oleracea HOM05D006526 ORTHO05D024464 1.0e-22 109.8 53 94.3
CARHR075020 Cardamine hirsuta HOM05D006526 ORTHO05D008496 5.0e-22 107.5 84 72.6
BcaB05g22970 Brassica carinata HOM05D006526 ORTHO05D008496 3.3e-21 104.8 85 70.6
BcaB05g22967 Brassica carinata HOM05D006526 ORTHO05D008496 1.2e-20 102.8 85 69.4
AT3G01920 Arabidopsis thaliana HOM05D006526 ORTHO05D008496 1.6e-20 102.4 84 69.0
Aa31LG5G11040 Aethionema arabicum HOM05D006526 ORTHO05D008496 2.3e-19 98.6 84 65.5
A01p25030 Brassica napus HOM05D006526 ORTHO05D008496 2.3e-19 98.6 85 65.9
BraA01t02414Z Brassica rapa HOM05D006526 ORTHO05D008496 2.3e-19 98.6 85 65.9
AL3G10210 Arabidopsis lyrata HOM05D006526 ORTHO05D008496 6.8e-19 97.1 84 66.7
Sp3g00170 Schrenkiella parvula HOM05D006526 ORTHO05D008496 2.0e-18 95.5 85 64.7
BcaC09g49919 Brassica carinata HOM05D006526 ORTHO05D008496 7.5e-18 93.6 85 63.5
C01p31260 Brassica napus HOM05D006526 ORTHO05D008496 7.5e-18 93.6 85 63.5
BolC1t03065H Brassica oleracea HOM05D006526 ORTHO05D008496 7.5e-18 93.6 85 63.5
Thhalv10000573m.g Eutrema salsugineum HOM05D006526 ORTHO05D008496 3.7e-17 91.3 81 65.4
BraA06t24956Z Brassica rapa HOM05D006526 ORTHO05D024464 4.9e-17 90.9 78 61.5
THA.LOC104821121 Tarenaya hassleriana HOM05D006526 ORTHO05D008496 1.4e-16 89.4 82 62.2
Atru.chr6.2570 Acer truncatum HOM05D006526 ORTHO05D008496 1.9e-16 89.0 83 57.8
COL.COLO4_13261 Corchorus olitorius HOM05D006526 ORTHO05D008496 9.2e-16 86.7 86 54.7
PGR042G1209 Punica granatum HOM05D006526 ORTHO05D008496 6.0e-15 84.0 55 72.7
TWI56G1218 Tripterygium wilfordii HOM05D006526 ORTHO05D008496 6.0e-15 84.0 84 53.6
Sabra16G0211400 Salix brachista HOM05D006526 ORTHO05D008496 7.8e-15 83.6 83 55.4
Thecc.04G036000 Theobroma cacao HOM05D006526 ORTHO05D008496 7.8e-15 83.6 86 54.7
Carub.0003s0016 Capsella rubella HOM05D006526 ORTHO05D008496 3.9e-14 81.3 65 69.2
Cpa.g.sc171.15 Carica papaya HOM05D006526 ORTHO05D008496 3.9e-14 81.3 85 50.6
Manes.15G161000 Manihot esculenta HOM05D006526 ORTHO05D008496 3.9e-14 81.3 86 55.8
Ciclev10015967m.g Citrus clementina HOM05D006526 ORTHO05D008496 6.6e-14 80.5 84 53.6
Duzib147G1379 Durio zibethinus HOM05D006526 ORTHO05D008496 1.9e-13 79.0 86 52.3
Gohir.D09G036900 Gossypium hirsutum HOM05D006526 ORTHO05D008496 1.9e-13 79.0 86 52.3
Gorai.006G042000 Gossypium raimondii HOM05D006526 ORTHO05D008496 1.9e-13 79.0 86 52.3
Gohir.A09G035700 Gossypium hirsutum HOM05D006526 ORTHO05D008496 2.5e-13 78.6 86 51.2
Hma1.2p1_1278F.1_g272280 Hydrangea macrophylla HOM05D006526 ORTHO05D008496 2.5e-13 78.6 55 70.9
Potri.001G330100 Populus trichocarpa HOM05D006526 ORTHO05D008496 3.3e-13 78.2 84 54.8
Eucgr.J02351 Eucalyptus grandis HOM05D006526 ORTHO05D008496 4.3e-13 77.8 86 51.2
Dinv33336 Davidia involucrata HOM05D006526 ORTHO05D008496 2.1e-12 75.5 55 69.1
GSVIVG01033093001 Vitis vinifera HOM05D006526 ORTHO05D008496 3.6e-12 74.7 55 69.1
DCAR_000965 Daucus carota HOM05D006526 ORTHO05D008496 8.1e-12 73.6 53 66.0
PGSC0003DMG400020254 Solanum tuberosum HOM05D006526 ORTHO05D008496 8.1e-12 73.6 76 53.9
Peaxi162Scf00420g00560 Petunia axillaris HOM05D006526 ORTHO05D008496 1.4e-11 72.8 55 65.5
CAN.G473.100 Capsicum annuum HOM05D006526 ORTHO05D008496 1.8e-11 72.4 74 56.8
Actinidia05903 Actinidia chinensis HOM05D006526 ORTHO05D008496 2.3e-11 72.0 55 61.8
MBI11_g23476_MAGBIO Magnolia biondii HOM05D006526 ORTHO05D008496 3.1e-11 71.6 55 61.8
CDE05G2481 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 5.2e-11 70.9 55 63.6
Oeu005097.1 Olea europaea HOM05D006526 ORTHO05D008496 5.2e-11 70.9 55 61.8
Solyc02g094150.4 Solanum lycopersicum HOM05D006526 ORTHO05D008496 6.8e-11 70.5 72 55.6
Sopen02g038780 Solanum pennellii HOM05D006526 ORTHO05D008496 6.8e-11 70.5 72 55.6
Actinidia36203 Actinidia chinensis HOM05D006526 ORTHO05D008496 8.9e-11 70.1 52 63.5
MELO3C014888.2 Cucumis melo HOM05D006526 ORTHO05D008496 8.9e-11 70.1 79 50.6
Lju41C52G13 Lonicera japonica HOM05D002875 ORTHO05D003215 8.9e-11 70.1 55 60.0
Nitab4.5_0002050g0140 Nicotiana tabacum HOM05D006526 ORTHO05D008496 8.9e-11 70.1 69 53.6
Rhsim10G0006300 Rhododendron simsii HOM05D006526 ORTHO05D008496 8.9e-11 70.1 69 55.1
CDE06G2358 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 1.2e-10 69.7 55 58.2
ATR0561G126 Amborella trichopoda HOM05D006526 ORTHO05D008496 1.5e-10 69.3 55 56.4
CDE05G3548 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 1.5e-10 69.3 55 63.6
CsaV3_3G027000 Cucumis sativus L. HOM05D006526 ORTHO05D008496 1.5e-10 69.3 79 49.4
vmacro05958 Vaccinium macrocarpon HOM05D006526 ORTHO05D008496 1.5e-10 69.3 55 60.0
Haze_14876 Corylus avellana HOM05D006526 ORTHO05D008496 2.0e-10 68.9 44 77.3
Glyma.19G091200 Glycine max HOM05D006526 ORTHO05D008496 2.0e-10 68.9 83 49.4
Phvul.001G093500 Phaseolus vulgaris HOM05D006526 ORTHO05D008496 2.0e-10 68.9 83 48.2
Ah.03g147500 Amaranthus hybridus HOM05D006526 ORTHO05D008496 2.6e-10 68.6 56 58.9
AUR62017828 Chenopodium quinoa HOM05D006526 ORTHO05D008496 2.6e-10 68.6 56 55.4
Glyma.16G056450 Glycine max HOM05D006526 ORTHO05D008496 2.6e-10 68.6 86 47.7
QL02p071425 Quercus lobata HOM05D006526 ORTHO05D008496 2.6e-10 68.6 55 63.6
Hund04346 Selenicereus undatus HOM05D006526 ORTHO05D008496 2.6e-10 68.6 56 57.1
Nitab4.5_0010204g0040 Nicotiana tabacum HOM05D006526 ORTHO05D008496 3.4e-10 68.2 55 61.8
Prupe.3G306300 Prunus persica HOM05D006526 ORTHO05D008496 3.4e-10 68.2 44 72.7
Aqoxy3G01551 Aquilegia oxysepala HOM05D006526 ORTHO05D008496 4.4e-10 67.8 56 62.5
Lalb_Chr14g0363401 Lupinus albus HOM05D006526 ORTHO05D008496 4.4e-10 67.8 80 50.0
AUR62003516 Chenopodium quinoa HOM05D006526 ORTHO05D008496 5.8e-10 67.4 56 57.1
Nn4g22325 Nelumbo nucifera HOM05D006526 ORTHO05D008496 5.8e-10 67.4 46 65.2
MSTRG.3258 Avicennia marina HOM05D006526 ORTHO05D008496 7.5e-10 67.0 55 61.8
Cfa007227 Carpinus fangiana HOM05D006526 ORTHO05D008496 7.5e-10 67.0 44 75.0
arahy.Tifrunner.gnm1.ann1.4N5YWB Arachis hypogaea HOM05D006526 ORTHO05D008496 9.9e-10 66.6 73 52.1
arahy.Tifrunner.gnm1.ann1.C96CVE Arachis hypogaea HOM05D006526 ORTHO05D008496 9.9e-10 66.6 73 52.1
ClCG05G013530 Citrullus lanatus HOM05D006526 ORTHO05D008496 9.9e-10 66.6 55 61.8
RcHm_v2.0_Chr2g0175561 Rosa chinensis HOM05D006526 ORTHO05D008496 9.9e-10 66.6 77 48.1
Cc07_g00840 Coffea canephora HOM05D006526 ORTHO05D008496 1.3e-09 66.2 43 67.4
Lj1g0010270 Lotus japonicus HOM05D006526 ORTHO05D008496 1.3e-09 66.2 79 48.1
SGA_v2.0_scaffold47G17596 Striga asiatica HOM05D006526 ORTHO05D008496 1.3e-09 66.2 68 54.4
TPR.G14866 Trifolium pratense HOM05D006526 ORTHO05D008496 1.7e-09 65.9 79 50.6
MD09G1010800 Malus domestica HOM05D006526 ORTHO05D008496 2.2e-09 65.5 55 61.8
CiPaw.03G055600 Carya illinoinensis HOM05D006526 ORTHO05D008496 6.4e-09 63.9 71 52.1
Ca_12965_v3 Cicer arietinum L. HOM05D006526 ORTHO05D008496 8.3e-09 63.5 55 60.0
SalBow7G1947 Salvia bowleyana HOM05D006526 ORTHO05D008496 1.1e-08 63.2 58 55.2
Psat3g163920 Pisum sativum HOM05D006526 ORTHO05D008496 1.9e-08 62.4 80 46.2
Migut.K01466 Erythranthe guttata HOM05D006526 ORTHO05D008496 2.4e-08 62.0 53 58.5
CANSAT64G1234 Cannabis sativa HOM05D006526 ORTHO05D008496 3.2e-08 61.6 51 62.7
PSO017G5829 Papaver somniferum HOM05D006526 ORTHO05D008496 3.2e-08 61.6 55 60.0
FvH4_6g53521 Fragaria vesca HOM05D006526 ORTHO05D008496 4.1e-08 61.2 44 63.6
FAN09G0514 Fragaria x ananassa HOM05D002875 ORTHO05D003215 4.1e-08 61.2 44 63.6
PSO478G2106 Papaver somniferum HOM05D006526 ORTHO05D008496 7.1e-08 60.5 45 60.0
A06p18730 Brassica napus HOM05D006526 ORTHO05D024464 9.2e-08 60.1 62 53.2
Os08g0531300 Oryza sativa ssp. japonica HOM05D006526 ORTHO05D008496 9.2e-08 60.1 59 52.5
Sed0022734 Sechium edule HOM05D006526 ORTHO05D008496 9.2e-08 60.1 44 63.6
unitig_88.g27695 Utricularia gibba HOM05D006526 ORTHO05D008496 1.6e-07 59.3 56 53.6
ECA238G1207 Erigeron canadensis HOM05D006526 ORTHO05D008496 1.0e-06 56.6 53 54.7
HanXRQChr14g0450751 Helianthus annuus HOM05D006526 ORTHO05D008496 1.3e-06 56.2 41 61.0
Lsat_1_v5_gn_2_93080 Lactuca sativa HOM05D006526 ORTHO05D008496 1.3e-06 56.2 41 63.4
Zm00001eb175140 Zea mays HOM05D006526 ORTHO05D008496 5.1e-06 54.3 55 50.9


User provided reference genes

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